Array 1 72227-70975 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGFI01000037.1 Escherichia coli strain OU-NP025 sequence037, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 72226 29 100.0 32 ............................. TGGCAGATCGATTTTACCGCCAGAATGACAGG 72165 29 100.0 32 ............................. ATTAAGGCGGACGAGGAAAAGGCAGACGTTAC 72104 29 100.0 32 ............................. GTCCATGGCCTGACGAAGCTCGTAATATTTTG 72043 29 100.0 32 ............................. ACGACCAAATGATCTACGCGTATTGCCACCTC 71982 29 100.0 32 ............................. TTAGGCACAGAAAAAAGGCTACTCAGCGAACT 71921 29 100.0 32 ............................. TATCGACCCCCTTTCTCACGCATCGCCATCGT 71860 29 100.0 32 ............................. TTAACGTCTGGATCCTGTGTGCCATGGACCGT 71799 29 100.0 32 ............................. TTAACGTCTGGATCCTGTGTGCCATGGACCGT 71738 29 100.0 33 ............................. CCAAAAATGCGCCCCATGCGCACAAATTCGCGC 71676 29 100.0 32 ............................. CCCCGCACACGTAAAGGCGTCGGCATGGATGC 71615 29 100.0 32 ............................. CCGAGGCCGCAGAACGCCGTGATATTGCGTTC 71554 29 100.0 32 ............................. GAAACTGAATCATCATTGATTACCCGCGAAGA 71493 29 100.0 32 ............................. CGACATAAAAACGTCCGGAGGCGCGTACTACC 71432 29 100.0 32 ............................. ATCAGGTAATCGAGACACCTGTCAGCACTCTC 71371 29 96.6 32 ............................C CCAGCGCCAGACGGGAACACAATTTTAAAGCC 71310 29 100.0 32 ............................. TTGTCGGGGATCTGTTCAAACTGACTCATTAG 71249 29 100.0 34 ............................. GGGGCGCATTAACAGAGAGAAAAACGCATAGGCC 71186 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 71125 29 100.0 32 ............................. TCGCTATTGCCGGTAGTGTCGCTGATAGACTC 71064 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 71003 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================== ================== 21 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTNNNNNNNNNNNNNNNNNNNNNNNAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1079-1473 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGFI01000152.1 Escherichia coli strain OU-NP025 sequence152, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1079 29 100.0 32 ............................. CCGGACACTACCGAACGACAGCGGCGGCGGGC 1140 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 1201 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 1262 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 1323 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 1384 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 1445 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGAGCGAGCCAACGAAATCAAGCATCCAGTGGGGCGCGTACGTGATATTGAAGCACTGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAANNNNNNNNNNNNNNNNNNNNNNNNTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //