Array 1 16743-18102 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABGNS010000026.1 Pseudomonas aeruginosa strain 3735 scaffold_25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 16743 30 100.0 37 .............................. ATTGAAGACGAAGTGTTTGACCAGGTGCTGGACATGT 16810 30 100.0 36 .............................. TCCATCGCCATCCAAGTAGTCTGAAAGGGTGGCCGT 16876 30 100.0 35 .............................. GCAGCCAGGATCTGCGCCTCGTAACCGATCCGCGT 16941 30 100.0 37 .............................. ACATTGATCGGCGACGCGGTACCGTTGTTGAACGTGT 17008 30 100.0 36 .............................. TGGAACTGCCGACTACTCGGCGGCGAAAGCACTAGT 17074 30 100.0 36 .............................. AATGACGCACTCGCCGGCGCCTACAGCTATGTCCGT 17140 30 100.0 36 .............................. TTCGCGTACGCCGGGTTGTGCACTTCCGGCGGGGGT 17206 30 100.0 35 .............................. TATTACGGTTCTGGGTGCAGCATCTGCGGGGGTGT 17271 30 100.0 36 .............................. ATGATGCCATATTCGTGCTGGTTCCCGGTACACAGT 17337 30 96.7 37 ..................A........... CAGCCGTTGAGAAACGAGCTTGGAGTCCATGACGTGT 17404 30 100.0 37 .............................. TCATGCTGGAACGCCAACGATCCGAACGCTCCATAGT 17471 30 100.0 37 .............................. GTGTTCCAGAGCCTGCTGGCCCGCGCCCGGCACCTGT 17538 30 100.0 35 .............................. TCGCCCTGGAGCGTGAGCCTGGTTGGTGGATCTGT 17603 30 100.0 38 .............................. GTCAGCAGCCGGGCCTGGAGCGTCACGCCCTGGCTGGT 17671 30 100.0 37 .............................. TCCGCTACCACGGTGGCAAGTGGCTGCTCGCCCCGGT 17738 30 100.0 36 .............................. CTCAAGGGGCTGAGCGGCATGGTGGTCCTCTCCGGT 17804 30 100.0 37 .............................. ACTGCGGGAACCGTCAATGGCGCTGGTCAGACTGGGT 17871 30 100.0 37 .............................. GGCGAGCAGTCTCGGCAGGAGTCGAGTATCCAGGCGT 17938 30 100.0 38 .............................. AAAAACGCTCAGATCAAGCGCTATCGCGCTCGCCTGGT 18006 30 100.0 37 .............................. CCGTCGCCGGTGATAACCGTGTTCGTGAATCTGGAGT 18073 30 83.3 0 .......TA.G............G.....G | ========== ====== ====== ====== ============================== ====================================== ================== 21 30 99.0 37 CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Left flank : TCTGTGGAAGTGAGGTGGCGACATGATGGTTCTGGTCAGCTATGACGTGAGCACTCAAGATGCTGCAGGTGGCAAGCGCTTGCGCCGCCTGGCCAAGGCCTGCCGCGATTATGGGCAGCGAGTGCAATACTCGGTGTTCGAGATCGAGGTGGATAGCGCGCAGTGGACATTCCTTAAGCATCGTCTGTGCAACCTAATCAATCCGGAACAAGACAGTCTACGTTTCTACTACTTGGGTACGAACTGGCAGCATCGTGTGGAGCATGTTGGGGCCAAGGTTGTACTCGACCTTAATGGCCCGCTGATTCTTTAGCGCCGGCGCGAACCTAAAGCGACCGACCAAACCCTGGGGGGGGGGGTCGCAACTCTCTAGCTGATTGATTTATATACTCTTTCTTTGAGGTTAGGAGTTTGAAGGCGCGCGCCTTGCTTAAAGAAGGCATGTTTCGCTGAAGTAAAAGGTTTTTTTCATGCTGATCAATAAGTTATAAGAGGGTGGT # Right flank : GATAGATTTTTGGGAGTTTGTCCTGAAAAGTTTTGTCTCGCCACTCTCTTCCCGGCCCAGAGTCTGGCCAGCAACTCTTGTGTCACGGTGTCGCGGCCCCAGGCCGAAAGAAAGATCAGGTTGCGCTGCTCGTCGCACACGCAGGCGTCGACGTACAGGTCTGGGCACTCTTCGATCTGGTAGAGCGGGGTGGGACTGGGCATAGGAACCTCCTGGAAGGAGGAGCCACGCCGCCCTCGAGGGGCGGTGAAGCCCCTCGGGGGTGTAGTCCAACTGGTGCAGGGGAGCGTGGTGGTTACCGAACGCTCTTGGTGTGAGGGTCGAAGCTCAGCCCATCGTCTTGGTGCAGCGGCCCTTGGCCGTTCAGGAAGACCTGGCAGAGGTACTGATCGCGTAGCGCGACAGCCGCTTCCGCCTGCTCCAAGGTCAGCGACAGCTCCTCGATGAACAGGTCGATGAGCTCGTCGTCGCCGGCGACGTCGTTGTTGGACAGTTGGTCC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CGCGCCCCGCACGGGGCGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 665-1292 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABGNS010000008.1 Pseudomonas aeruginosa strain 3735 scaffold_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 665 28 100.0 32 ............................ CGGCTACGCGACCGGCACCAACAGCGCCGCGC 725 28 100.0 32 ............................ AGCGCCTGGCCGAACTGGATCACCCCGTTCTC 785 28 100.0 32 ............................ ACGAACGAACAGTTTTTTCAGGTTTTTCATAG 845 28 100.0 32 ............................ ACATGCCCGAACACAGGGGCGCCCCATCCGGC 905 28 100.0 32 ............................ AGAACGAGCCCCGTGTATCGGCTTTGGACTCA 965 28 100.0 32 ............................ TTTTGGACAGGCCGAGGGGCCGTATCGACGGT 1025 28 100.0 32 ............................ TCGAGCAGCGGCCCGAGGAGTCCGAAGACTTG 1085 28 100.0 32 ............................ TCGATCACAGCAAGCCCTACCTGACGGTCGAT 1145 28 100.0 32 ............................ TGTCCCAGGCGCAGATACACCTGCCCGTCCAG 1205 28 100.0 32 ............................ CGCTTGTGGTCCAGCGACTGGCCCTTCGCCGG 1265 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 11 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : TAAGCCGAATGATACGTCCAACCCCGAGGTAACAGAATCGTCCCCCCGCTTCGTCCCGCTGCTACCCACCTCCCAGGCCGACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACACCCTTATAAATCAGTAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCGGGAACAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //