Array 1 487554-487749 **** Predicted by CRISPRDetect 2.4 *** >NC_017075.1 Rubrivivax gelatinosus IL144, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =================================== ================== 487554 25 100.0 32 ......................... CGTCACCGGCGACGGCCGTGCGAGCGATCTGT 487611 25 88.0 35 .....GAC................. TGCCCGCTTCGCGTCGCTGCCGGCCGACAGCGTCA 487671 25 100.0 29 ......................... TGCCGATGTCACCGCCGACTCGTCGCTGA 487725 25 88.0 0 .................TC....G. | ========== ====== ====== ====== ========================= =================================== ================== 4 25 94.0 32 CGGTGTCGATCGCCGGCAGCGGCAA # Left flank : GCAGGCAGGATGCCGGCATCCGTCTGGAGCCGCTGCCATGAAAAGACTTCTCTCCACCCTCGCCGTCGCCGGCGCTTCGGCGATGTTCGCCGTGCTCAGCTTCGCCGCCGCGCCCGCGCAGGCGGCGACGATGACCGACTTCGGCCCGCTGGCCGACTTCAGCGCGATCCAGGTCAGCGGCCCGGTCGACCTCGCGGTGCGTCCCGGCGCGCGCGAGTCCGTGCGCCTGGACGGCGACGCCGATCTGCTGGCGCGGCTGGAGGTCAAGGTCGAGGAGCGTCGCGGCCAGCGCACGCTGGTGATCCGCGTGCGCGAGGAAGGCTTCTCGTTCTTCAACCGCGGCAAGGCCAAGGCCAGCGTCGAGGTCGTCAACCTGCGACGCGTGGGCAGTTCGGGCTCGGGCAACATCGAGCTCGAGGACCTGAAGACGCCGGTGCTGGCGCTGGGCCTGGCCGGCTCGGGCAACGCCCGGCTGAACCGGCTGGACGCGGCCAAGCTGG # Right flank : ACGTGCGCTACGGCGGCAAGGCGGCGCCGCACACCAGCATCGTCGGCAGCGGCCGGGTGCGTGCGCGCTAGTCCCCGCGCCGGCGCGGTGCCGGGGCCGATGGGACAATCGGCGCATGTCTGATGGGATGTTCGGCTGGCGCCACCCCGAGTTCCGGCGTGGCGCCCGCGAGATGGCCGGCATCCTGCCCGGCATCGGCGCCTGGGGGTTGATCACCGGCGTCGCGATGATCAAGGCCGGGTTGTCGGTGCCGGCGGCGGTGGCGATGACGCTCTTCGTCTACGCCGGCTCGGCGCAGCTGGCGGCGCTGCCGCTGATCACCGCCGGCGCGCCGCTGTGGGTGATCTGGGCCACCGCCTTCTGCGTCAACCTGCGCTTCGTCATCTTCAGCGCCCAGTGGCGGCCGTACTTCGCCGTCTACCCGCGTGCCGAACGCACGCGCATGGCCTTCTTCAGCGGCGACCTGAACTACATCCTGTTCATGCGCCGCTTCCCCGATC # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGGTGTCGATCGCCGGCAGCGGCAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [21.7-21.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 706712-704057 **** Predicted by CRISPRDetect 2.4 *** >NC_017075.1 Rubrivivax gelatinosus IL144, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 706711 29 100.0 32 ............................. TTGGCGTTGCCCCATCAACGCTGACTAGAGCG 706650 29 100.0 32 ............................. TCGCCTACGTAGAGATCGAGTTCACGGGACAC 706589 29 100.0 33 ............................. CCTTGACGTCATGTGCGGCGACTGCGGGTTGAA 706527 29 100.0 32 ............................. TGATCCTCAACTCAGAGGCGCTTGCCGCGCTG 706466 29 100.0 32 ............................. TGAAGCAGTCGCAGATGTGGACGCTGTCCGCC 706405 29 100.0 32 ............................. TGGCGCAACCTGCCCCACGCCCTGCAAGGCGG 706344 29 100.0 32 ............................. CGTCGCCGATGCGTGATCCGCTGGTGCGCGAG 706283 29 100.0 32 ............................. GCTGCGATGTGTGGGTGCTGGCCGATGGCGCC 706222 29 100.0 32 ............................. AGCGGATGCGGGCCTATTGGGCGCGTCGGCAG 706161 29 100.0 32 ............................. ACCGGCGCGACGCTGCGCATCGGGTTGCGGGC 706100 29 100.0 32 ............................. CCCCGTGCGCCAGGCCGGCGCGCCAGCCGGCG 706039 29 100.0 32 ............................. GGACACGAGATGACTGAGCGCGATCACGCGAT 705978 29 100.0 32 ............................. ATCGAAGATGCTGCGGACGCCGTTTGCCGGCG 705917 29 100.0 32 ............................. CGAGATCCCGCGCTCGGCCGCATAGCGCACCA 705856 29 100.0 32 ............................. ATCGTGCCGACGACGGTCGAGCCTGCGGAGAC 705795 29 100.0 32 ............................. CTCGGCGTCAATGCGGTCCTTCATGTAGCCCA 705734 29 100.0 32 ............................. CCATGGCTCGCCAGATCAACGGCCGCGATCGC 705673 29 100.0 32 ............................. ATGGAAACCGAGGTCGCCGCCGACAACGCCGA 705612 29 100.0 32 ............................. CTGGAGGACAGCCAGGCCCTGCTGCTGATGCT 705551 29 100.0 32 ............................. TCGGCCAGGCCGAGCGCACGCTTCGCGCGCAC 705490 29 100.0 32 ............................. AAGTTCAAAGCCGGCGACAAGGGGGCGGCGCT 705429 29 100.0 32 ............................. CAGCGCCTTGGCGTCACGGTCACGGTCGGCCA 705368 29 100.0 33 ............................. CGGTGCTGGCCAAGGGGGTGCTGCGGCGACTGG 705306 29 100.0 32 ............................. CCGCCTTCGATGGTGGTCCCGTGCTTCGTGGC 705245 29 100.0 32 ............................. CCGATCGTCGGCACGCCGGCCGGGCACAGGTA 705184 29 100.0 33 ............................. GTGGACGGCCGCTGGTCTGAAGCCAAGCTCGCC 705122 29 100.0 32 ............................. TTCGGGCGCGTGCCGGCGCTGGTGTTGGGGAT 705061 29 96.6 32 ..........A.................. GACACGGGGAAGAGCAGCCCGCTCGACGCGCC 705000 29 100.0 32 ............................. TCGATCGTGAGGCTGTCGGCCTGATCGTAGAT 704939 29 100.0 32 ............................. TAGCTGTCGGGCGCCGAGGTGCCACCCACGAC 704878 29 100.0 32 ............................. CGCGCGCAGACCGCCAAGACCCTGGCCGAGGC 704817 29 100.0 32 ............................. GACCTGCTTCGCGCGGCGCTGCGCGATGCTGT 704756 29 100.0 32 ............................. GGCTGGATGGAGCTGAAGGACGGCCTCCGGCG 704695 29 100.0 32 ............................. CTGTCGACCACGATGTCGCAGCTTTCCGGCCA 704634 29 100.0 32 ............................. ATGTGCGTGACGCGGATGCCGTCCTTGGCCAG 704573 29 96.6 32 .......T..................... ACTTCCGGTAGGGCTCCGGCTTGCCGACGAAC 704512 29 96.6 32 .............A............... GCCTCGCGCACGATCGAGGTCATCTCGTTGAG 704451 29 100.0 32 ............................. GTCGACTTCCCCATGCCCTGCGGGCCTTCGAG 704390 29 100.0 32 ............................. ACGACTGGAGGGCGGCACTGCGCGATGAGCGA 704329 29 100.0 32 ............................. ACGTAGCGCACGTGTTCGACCTTGCCCAGCTC 704268 29 100.0 32 ............................. ACCGGCGGCTGGCGCTACTTCGTCAAGTACTG 704207 29 96.6 32 ....................A........ CGCCTGGCGCTGCTGGATAACGACCGCAGCGA 704146 29 100.0 32 ............................. GCTGAGGAGTTCGATCATGGGTGTCCCCGGAG 704085 29 96.6 0 .........................G... | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.6 32 GCGTTCCCCACGCGGGTGGGGATGAACCG # Left flank : CTGGCCGGGCGCGGTCTCGTAGCGCACTGTGGCCACGCTCTCGGCCCGCAACTCCCGACGCAGCGGCTCGACGGCACGCTGGACGGTGCGCAGGCTCACGCGGATGCCCAGCTCTCGCTGCAGGTCCTGGCGCACGACGTCGGCGTTGCCGCGGTGCTGCCGCAGCCGCTCGGCCAGCCACTGCCGGTGCGGCTCCAGGACGCTCTCGCGGTGCGTCGTGCGCATCGGCCGCCAGCCGCCTTGCCGCAGGTACTCGCGCACCGTGTTGCGGCTGCAGCCCAGTTCCCGGCTGATGCGCTTGGCTCCCCATCCCAGCGCCTGCAGCGCCAGCATCTTCTGCACCTCCTGTGGCGCCAGCATCGTGTCGCTCCCCGGGCCTCGTTGGACCGGCTGAGCTTGGAACACTTCCTCCATCGACCTCTCCTTCGTCAGCGAAGGGGGTCAGTTCTCAATGACGCCAGGGGGGCAGTTTTGCGTGTCGCCCAACAACCCATTTCGCA # Right flank : ACGCTGACGGCCTCCCACCGCACCGCCATCTAGCGCGCGAGGATGGCGTCACGTCGCCCGATGACGCGCTGGCCGCCGTGCAGGCATGGAACGATCGCAAGCGCCGCCTGATGAAGCGCGAGCATGTCGCCGCCGCATGGCAGCGCCTGCAAGACGAGGGCTGGCTGGAACCGTTCGCCGCGCGCCCGACGCAAGCGATTCCGGCTTAAGCGCTGCCGGGCACCGCGCCAACAGGCTACTGCACTGGCGCCGGGATACCCCGCTCCGCGTTGTCCTGCACCAGCACCGCCCTCGCCGCCGCCCGCACCTCATCAGCCGCCGCGTCCACCAGCCGCTCCGGCTCCGCCAGCTTCAGCCGCTGCGCCAGGGCCGCCAGCACGCGCCGGTTGGCCCAGGCGTGCGGGTTGGCGCGGTCGTCGCCCTGGTTGGCGACGAAGGCGCGCAGGGTCTTGGCCAGCGTCTGCTCGGCCTGCGCCAGTTCCACCAGCTTGGCGCGGTAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCACGCGGGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCGTTCCCCACGGGCGTGGGGATGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.20,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 709446-708990 **** Predicted by CRISPRDetect 2.4 *** >NC_017075.1 Rubrivivax gelatinosus IL144, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 709445 29 100.0 32 ............................. CCCAGCCGCTACACCGACGCCGAACAGCAGCG 709384 29 100.0 32 ............................. CTCTCCCAGGGCTGGCGCGCGGTCCACTCGTC 709323 29 100.0 32 ............................. GCAGCAGGGCGTTCAGGTTGAGCAGCGTCGCA 709262 29 100.0 32 ............................. GCGGCAATGCAACCGATGAAGAGGGCGCGATC 709201 29 100.0 32 ............................. CGAATGGGTCGCGCGCGCGCGCCGTGATCAGC 709140 29 100.0 32 ............................. GCGTTTGAGCACGGCATCTTCACTGATGCCGA 709079 29 100.0 32 ............................. GCACCAAAGGTGAGCATGAGTTGACCACGCGG 709018 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 100.0 32 GCGTTCCCCACGCGGGTGGGGATGAACCG # Left flank : AACTGCTCGAGCGGATCATCCCCGACATCGAGGACGTACTGGCGGCAGGAGAAGTTGCACCGCCCGAGGCACCGCCAGACGCAGTGGGCCCTGCTCTGCCGAACGAGGAGAACATCGGCGATGCTGGTCATCGTTCTTGAGAATGCGCCACCGCGCCTTCGCGGCCGGCTTGCGGTGTGGCTGCTGGAAGTTCGTGCCGGGGTCTACGTCGGCAACTACAGCCGGCGCGTGCGCGAACACATCTGGGCGCAGGTCGAGGAGGGGCTGGAAGACGGCAACGCCGTGCTCGTTTGGCGCAGCAGCGCCGAAGCGGGGTTCGAGTTCACGACACTGGGTCGCAATAGGCGGATGCCAACGGACTTCGATGGTGTCCAGTTGGTCAGCTTCCTGCCGGAAGTACCGGCGACCGGGGCTCTTTAAAAAACTGGAAATGGGCGCCTCAGCTCGGTAGCGTTGGACGCGCCCAAAAGCCTGTTTGTTTTCAACGGGTTGGAGGAAGT # Right flank : TCTCCGAATACTCATCGGCGACCCATGTCAAGCGACATCGAGAACTGACCCCCCGGCGACATCCAGAAGTGACCCCCGGGTGGTGGTTCAGTTGGTTGTTGCGGGGTTCGCTCCGGCCTGGTTAACCAGGCCGGAGCGGCGCTTGGTCCGCAGCCGGTAGCTGTCGCCGCGGATGGTGAGGACGTGGCTGTGGTGCAGCAGCCGGTCGAGGATGGCGGTGGCGACGACGGCGTCGCCGAAGACGCCGCCCCACTCGGCCACCGAGCGGTTGCTGGTCACGAGCATCGAGCCGCGCTCGTAGCGGCGGCTTACGAGCTGGAAGAACAGGTGTGCGGCGTTGGCCTCGAACGGCAGGTAGCCGAGTTCGTCGACGACCAGCAGCTTGGGCTTGGCGAAGTGCACGAGCTTCTCCTCCAGCCGGCCTTCGACGTGCGCCCGCACCAGCTGCGTCACCAGGCTCGTCGCTGGCACGAAGAGCGTGCTGTAGCCGCGCACGATGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCACGCGGGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCGTTCCCCACGGGCGTGGGGATGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.20,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //