Array 1 27961-26728 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGQT01000003.1 Azospirillum sp. TSH7 Contig19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 27960 37 100.0 39 ..................................... ATGATTCGGCGCTGCAGGAATTGGGGCATGGGTCGCGCC 27884 37 100.0 37 ..................................... ACATCGGCGGCCGGCGCCTGCGCGCGCTGGAGAAGCT 27810 37 100.0 37 ..................................... AGTTGGACGCGCCGGCAGTAGTGCAGGTCGACCGGGA 27736 37 100.0 35 ..................................... TCCTTGGGCGCATCCCGCCCGAACTGCCGCTCGCC 27664 37 100.0 41 ..................................... GGGACTTCCTTCCTGCGCTGCTGAGCCATCGCCACCCCCCA 27586 37 100.0 38 ..................................... GTCTTGCCGCGCGGAAACAGCATGGTGTCCGCCTTCGT 27511 37 100.0 36 ..................................... CGGGTGATGCCGTCGTATCCGGTCATGCCGTACCAA 27438 37 100.0 37 ..................................... AACCGGCGCGAGGCGGTGGTCAAGGAAGGCGAGCGGC 27364 37 100.0 35 ..................................... TCGGGATCGCCGGTGGTGCCGTCGGTCTGCCACTT 27292 37 100.0 41 ..................................... GGACCACGCGCCATGAGGCCACAGCCGGCGGGAATGTCCTG 27214 37 100.0 39 ..................................... GACCATACCTTCGCGGTGTACCGACCGTCGGCGACGAGG 27138 37 100.0 35 ..................................... TCCGGGCCGCATACGATCATCGACGGGGTGACGTT 27066 37 100.0 36 ..................................... ATAGAACAGGGCGTTGCGGAGCGTCCCGGCGGCGTC 26993 37 100.0 40 ..................................... AGCACGTCGGTGGACGACAGGTCTCCATCACCGCGGCCGG 26916 37 100.0 39 ..................................... GACATCTGGCGGCCGAGCTACGGCGCCGCGGTGGTGACC 26840 37 100.0 39 ..................................... ACCCCGGCCTTCGCGCGGAGGATCGAGCCGGCGACAAGA 26764 37 97.3 0 ...................................A. | ========== ====== ====== ====== ===================================== ========================================= ================== 17 37 99.8 38 GTAATCCGGAGCGGAAATGCTCCGGCCTCATTGAAGC # Left flank : CCATCCTCGGCCGTCCCGAGCCGGAGCGCGTCGGCACCGCCACCCGCGCCCTTCTCGGCCGCCTGTCCGGCCCCTTGCCCGCGGATGCCAGCCTGTGGTGGACCCGCGGCGCCGGCCGCATCGCCCCGTCCCTGCTGTCCTGCCCCGGCCTCCCCGCCGCCCCCCGCCCGACCGCCTTCCTCGACGGCGCCTGGACCCGCTGGGGCTGGGAGAATACGGAGGAGGGGTAAGGGGGTCGGGAGAGGGCGGCCAGCCCCCTGCGATGGCATTGCCCCCCACCCCATGCTATCCTTCCCACCGCCGCCCCGCCGCCGCGAGCGGTCCGGCACAGGCGAAACCCCCGTCACCGCTCGCAAGGGCGGAGTCGTTGTTTTTCCTGGGTTCTTTGACATCGTTCAGAACGAAAACGGACCCAAAGACCTGACCGAGCCGACAGAGTCCCTCACCGCTCGATTCCAGGGCGAATCGCTGTGGACTTTGAACGGTTTGAGGGCAAGGCA # Right flank : AGCTCGTTGTGATCGTCGGTGATGCCGAACAGCCTTTTCACTCCCGGCATTACGGCCCGATCCCTTGGCGAAGGCATTCACCCACGGCTTTCCACCGGAACTGCGCGGGCCGCGCTGGTCTGAAGCCATCCGTCGTGATAGGACTGCGTACCCATCTCCAATCCCGGAGGCCGTACATGAGGCCTGTCGTCCGCTTTTCGTCCTGCCCGCTTCACTGCCGGATCGGCGTGCGGCTCCGGGATATCGGGCCTTGCTGGCCGTCGGGCGGCAGGTCCTGCAACACCACCCGCCCGGTCCGGTGTTCCATCCGCCGCGCCATTCCGGGGCTCCGACGGCGGCCCGCCCCCCTTGTCCGCTCCGTTGAACGGATGAACAGGGTGCCGGAGTCTGTTTCACGCTGTTCCAACCCGCGCAACCCGCCCGCCGCTTCCCATCGCCGCGGGCGGGCGTCCGGCCGGGCGTTACCGCACCCCCGCCATCTCGCGGTCGAACCGCGCCAG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAATCCGGAGCGGAAATGCTCCGGCCTCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-14.10,-14.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 20642-19867 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGQT01000167.1 Azospirillum sp. TSH7 Contig98, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 20641 37 100.0 36 ..................................... TCAGATCCGAGCGCTCCTTCGCCAGCTTACTGGCCG 20568 37 100.0 36 ..................................... CAATGGGTTGGCCGACGCGCCCGCCCCGTCGACGTC 20495 37 100.0 38 ..................................... CCGACCCACTATGCGGAGGACTTACCCGGCGCCACCGC 20420 37 100.0 38 ..................................... CGCTGTAAACCGCCACCATGACGCCCAGCGCAGCGTTA 20345 37 100.0 35 ..................................... AGCTCCAACTACACACTCTACGGCGACATGTCCGC 20273 37 100.0 36 ..................................... CCCGCAATGGGCGGTGGAGGCCGCAGTAAAGGAATG 20200 37 100.0 38 ..................................... AAGCGCAGGTCCAGACGCTGACGCAGATGCTGGCGACG 20125 37 100.0 38 ..................................... GAGTCCTACGACGGCATCGCCATCATCCGCATCGAGGG 20050 37 100.0 38 ..................................... CCCTGGACGTTCGGATCAGTCTCTTCGGTCTCGGTCGG 19975 37 97.3 35 ...................................A. TCGTCGCGGTGAAAGAGCCGGTACTCCGCCAACCA 19903 36 81.1 0 ........A....-....T........C...G..C.T | C [19881] ========== ====== ====== ====== ===================================== ====================================== ================== 11 37 98.0 37 GTCTTCCCGGGCAGAAATGCTCGGGCCTCATTGAAGC # Left flank : GATGCGTGTCGTTGATGTAGCGGGACAGCGATTCGCCGGAATCGGGCGAACGGAGGGCAATGGCGGTGCTCATGTCACATCCTCGTGCAAAGCGATATGACGGGTGCAAGGCCCCCAAATGGCAGGCCCTGGCCTCTCCGGCGGAGCAGGCGGTGATATAGTACAAAATCGGTGCTGAAAGTCAAGCGTGGTGGTCGGGTTATGGAACACGGGTATGGGTTGGAGGCGGGCGTGGTGGGGGCCAGTCTGAGGACGATGCTGGTGAGCCCCCTCAACCTGTGCTACCTTTGTTCCGCTGCCCACGTCTCCTTGCGAGCGCTGGGACGCACGCGAATCCCCGTCTACCGCTCGCATCAGGCGATCATATTGATTTCGCGAGGTTCTTTGACAAGGTGAAGAACGAAACGGAACCGGCAAATCCTGACCGACCGGTCAGGAACACGGACCCCTCGCAAACGTGGCGAATCCACATTGCCTTTCAGTGGGCTACGGGGTAGGGA # Right flank : ACACACATGAACCCGGCGTCGTTGCTCTGATCGGGTATCGCGGCAAACCCCCGGGATGGAGGCGCCGGCCAGCGCTAATTCTATTGCTCGGCAGGGGTGGGGCGCTTACGGTCGCATGTCGCACCATATGAGTAAATCCCAGCCCGGTCCCCCTGCCCAGATGCCGCGTCCCGTTATCCGCCGCCTGATCGATGCCGTGCCGACCGCCGTCCTGCCGATGGCGGCCGGGGTGGGGCTGTCGGCGCTGGTGGCGCCGCAGCCGGATGCCGCCATGGCGCTGCTGCGCGGGCTGGTGGTCACGCTTCTGCTCACCCTTCCGTCGCTGGCGGTCGGCACCGCGCTGGGCACGCTGGCCGGATCCTGGGCGGCGGTGGCGCCGCGGTCGGCCGGCGGGCTGGTCGGGCGGCTGCTGGCCGGGGCCGGGCCGCTGTTGCCGGGATTCCTGCTGGCCGCCGTCGCGGCGCTCGCGGTGCGGGCGGGGGCGTCGGCGGCGCCGCTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCGGGCAGAAATGCTCGGGCCTCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.00,-14.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //