Array 1 297758-298071 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCMJ01000002.1 Secundilactobacillus silagincola strain IWT5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ================================================================================= ================== 297758 24 100.0 37 ........................ TCTGATAATTTAATAGCTCATTTACTTGTCGCTCTAG 297819 24 100.0 37 ........................ CTCGTCTTTAGTGGCGTTAGCGTTGTAAGCAATCTAG 297880 24 91.7 81 ......................TA CGCTGCATTGACTGCGGCCATCATGATTTACGTAAAGACGATCTCGTATGTTATGATAATTGCAATAGTTTTCATAACCAA GGT [297894] 297988 24 95.8 36 ........T............... AATTAGTATGAGGATCTTTGTTAGGACAAATGTGCT 298048 24 75.0 0 ........TT.......A...AGG | ========== ====== ====== ====== ======================== ================================================================================= ================== 5 24 92.5 48 TCCCCGCACCAGCGGGGGTGATCC # Left flank : ATCATGGTAGAATTACACAGAAAAGTTGCCAATAACTGAACTATTATTTGGTCATTTATCAATGTGTTTAATCCTTTTCTTTGAAATAACTGGATATGAAGTATTCTCTTAATGGGCTTTAAAAACTTGATATAAGACTACACATTTTTTGTAGCTTTTGCTCAAGTTTTCTGGACTAATCTGAATAACTAAATTGCAAAATTTGTAATATAAACTTACTAACAGGCGTAAAATCCCGAGAAATCGGGATTTTTTCTTTGAAGAAAATTAATGCATCAAGTTGAAACCTTCTAATATTAGTTTAGATTCTTGTCCGTTTATTCACATATTGAATTTGGATTGGTAGGTCATCACAATGGAATTATCGTGGACGCAACATGAAATCTGATTGTGGTATATTTAACGCATGATCTGTTTCATGTTCTTCTATAGTAGAACTGAATAAAATTACTTGATAGGTAATTTAGGATTGTTGTTATATAGGGATTCTTTTAGTCTAG # Right flank : GTATCCATTATCGGATACTTTTTATATTTTAAAAAATAAGAACATTAGAATGAGAATAAATAGTGATTAATGAAAAGGAATGTGTTATCCTTTAAATAACGAATTAGGAGAGGTTAACTGTACTTCATTTTAAATAAAATCTTATAAAGGAATATCAAAGGTAATCAAATGCTAAACACTTATAAAGTTGAAATTAAGCCAACCGCCAAACAAACATGGCTGATTGATTCCCACATTAGTGGTAGTTGCTTGGCCTATAATCTATTCTTAGATATCAATAAACAGCGTTATGAACAGGATTATTATTATTTAGATGCTGATGCTTTTAATAAATGGTTTAATCATGAATATCTTGAAGCTAATCCTGATGATATGTGGATCAAGAATTTGTATGCTAAGTCAGTTAAACAGGCATTTATAGATGCTGATGTGGTCATGAAACGTTTTTTCAATAAACAGAGTGTTTTCCCTCATTGGCGGTCATTTAAGTGCGGTCAAGG # Questionable array : NO Score: 4.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-1.64, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCCCGCACCAGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCCCGCACACGCGGGGGTGATCC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-13.20,-13.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 308914-309615 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCMJ01000002.1 Secundilactobacillus silagincola strain IWT5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================================================================== ================== 308914 29 96.6 32 ............................T ACTGTTTTGACCGTTGGCCATTTGACCAATCA 308975 29 100.0 32 ............................. GCCGATATTTCAAAAGACCAATTACCCTTTGA 309036 29 96.6 32 ............................T ATTTCTGTTGCCCTGTTGCATTATCCCGAATG 309097 29 100.0 32 ............................. TCATATGTAAGTCTTGACCTGAACAAGTCATT 309158 29 100.0 32 ............................. AATCAGCTGGTCATGCTTGTACTCGTAGCCAA 309219 29 96.6 32 ............................T CAAAGCTGTATGTTTCGCTCTTAATCCATTTA 309280 29 100.0 32 ............................. AACCGTGACCTGGATAACTTCGACGGCGGAAA 309341 29 96.6 32 ............................T ATTTACATCTACTAACGATTTGTTTGAGAGCC 309402 29 93.1 32 .............G.......A....... ATGATAAGATACAAGCGTTAAAGGTTTCACAC 309463 29 82.8 95 .....T......CTG..G........... ATTTCAATTCACGCACTCCTCGAAAGAGTGTGGTATTTCCCGCACTGGTGAGAGAGTGATTCCAAGCACGCTCAAAACGCATTTGATAAAACCGA 309587 29 65.5 0 G.T.......T.CCA..G.A....G...T | ========== ====== ====== ====== ============================= =============================================================================================== ================== 11 29 93.4 38 ATATTCCCCGCATACGCAGGGGTGATCCC # Left flank : ATTCACGACAAAATAGTTTCAGTTGGTGCGGTGAAGAGGTCAATTAATGGTGAATTTCAACAATTTAACGCCTATGTAAAGATTGATGATCCCATGCCCCCCAAAATCTCTAAACTAACTGGTATTACTAATGAAAAACTGAATCATGAAGGCAGAAATTTGAGTGAGGTATTGAATGAGCTAACGAAATTTGTTGGTGATGATGTGATTGTTGGTTATAATTCATCTTTTGATGACGAATTTATATCTGCTAACTTGAGAAGATTAGGGCAGCCTATTTTGACTAATCGGCTTGTTGATTTGTTACCTATTGTCAAAAAGCACAACAAGTTTCTCGATAACTTTAAATTATCAACGATTTTGGGTGAGTATGAGATTGTTAACTCTCATCCACACGATGCATTGTCGGATGCAAGTGCAACAATGAGGCTTGCAGAAGAACTGATTAAAAAAGGGCAATTAGTAATATGAGATTGCTGATTTAACGGGATCTTTTTAGT # Right flank : TATGAACTGATTGGTGGAGTTGTCCTGCGTTTCGTGGCCCCTGCATTTGCGGGGTTGATCCTGTTTCAGAACGACTTACGACGGTCTATCGATTGTTTTCCTGTGTACGGATTGATTCTTTATTGTCCATCGTCATCGTCCTCCCCGCACAGTGGAGGTGATCCCCCTTGAAACCTGGGATAATAATTATGGTATTTGATTCTTCCCGCACTAGAGAGGCATAGCATTGAATTCTTTTTAAGCGCAATAGTGGTTCTGAATGGTACGAAGTTAATGAATGAAATTTAAGTGTTTGTTTCAAGTATTAGAGCAATTTAGCCAAAATCGAGTAGTATTGAGTTCAATTCATTTAATAGGGTAAAAAGTCTTCCTATTATTTTCTGAAGGGGGTTCAAACATGAAGCATCATTAAAATAGCGTGGGCCAAATTCATTGGTCTCACGCCATTTGTTGTATCTTATTTAGTTCCAGCTGGTTCTATTTACCTTCACCCACCACCA # Questionable array : NO Score: 5.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.67, 5:0, 6:0.25, 7:-0.51, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATATTCCCCGCATACGCAGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCATACGCGGGGATGATCCC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.50,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //