Array 1 80590-81294 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRDN01000008.1 Desulfitobacterium chlororespirans DSM 11544, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 80590 33 100.0 36 ................................. TTGATGGCCTCCCGTTGCTCCGGGGCATAGATGACG 80659 33 100.0 34 ................................. ATGGCAGGGCGAATACCTGGTTGACCAGCATAAG 80726 33 100.0 34 ................................. AGTCTGAGCTTTACTGTCCTTTGTGACCTTTGCG 80793 33 100.0 34 ................................. TGCGACAAAAAACGACTTTCAGCTTAAAAATATG 80860 33 100.0 36 ................................. CTCATCGTTTGTGGGAAGATTTCGATGACCTTTTGG 80929 33 97.0 33 ................................G TGCTAAACGCGGGGCCCTTTTCCTCTTAGCAGG 80995 33 100.0 34 ................................. AAAAGGATAATAAGAAGAAGGAGGAGGAATATCA 81062 33 100.0 33 ................................. ATTACTTGTCCATGTTTATATTACACCAATCAG 81128 33 100.0 35 ................................. ACTCAAGATCAGATGGCTGATGCCCTGGGTGTAAA 81196 33 100.0 33 ................................. CTATATTTGTATAGTTGTAATCTTGTCCTCTAT 81262 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 11 33 99.7 34 GTCGAGGCCTCTGCGAGGCTCGAGGGTTGAAAT # Left flank : GACGGATATCCGGCCTTTATGTGGAAGTAGGTGAGGAAGATTTTAGTGCTGATCACGTATGATGTTAACACCCAAACCGCGGCAGGAAGAAAGCGGCTGCGTCAGGTTGCTAAGCAGTGTGTGAACTATGGACAACGTGTCCAAAATTCTGTTTTTGAATGTGTGCTGGATGCGGCAAAATTCCGCGAGGTTCAGCATAAGCTGGAGCAGATCATTGATACAGAGACGGATAGCCTGAGGTTCTATATGCTGGGGAATAATTATAAGAACAAGGTTGAGCATATTGGGGCCAGGCCTTCGTTTAATGTTGAGGATACTTTGATTATTTAGTGCGAACCTATAATGCACAGCAAATCCTCGGGAGGTTCGCACCGCGAAATGAGAGGGAATTTGCTGAAATTTGTAGGGGAAATGATAGGAATGTGCTGTAGTGGGGGGAAGAAGTTTAAGAAAATGAACAAAAGTTGACTTTAAGTAGATAGTTTTGATTACTTTTTGCA # Right flank : TGGGTTATATCTCTGAAATATGATAGAGGATGCCAAATAAAAGGCATCCTCTAACTTTTGTATTGAAGTTATTGCGGTTTCTTATATTTTAAGGTTCTATAGATTGCCTGACCACACTCGGCCAAAGAGCAAACTACGATAACAATGGAAATAAAAACAACAAACAAGTTCGGTCCGCTCGCTCCCATGAAGCTTAACAGGTCAAAGCTGCTCCAATCAACACTTTGCAGAAAGGCTATAAACTCCGCGCTAAACAAATCCGGCCTATTAAATAGATAAATCATGATGCACATGTTGATTATAGTGCTTACAACAACTGCACCGCAAACAATTGGCGTCCATCTGCGGACCTTGATTTTGAAAATACATGCTCCCACACCTAATATAGCCATGACTGCAATAGCGGGGACACAGCTTGCCAAAAAGCTGGGACTGAAAAGGGTGCGTATTTGTGTATCACCATTTAGGATAACAAAAGCGATGGGTAATACTCCGCGGCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCCTCTGCGAGGCTCGAGGGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 311787-310360 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRDN01000007.1 Desulfitobacterium chlororespirans DSM 11544, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 311786 30 96.7 39 .....................A........ TCAGTCACACTCAGCTGCATCGTCGAGTTTTGGTTATTA 311717 30 96.7 35 .....................A........ CTTGGTACGGCGGGTCTGACCTATCAAAACTTCAC 311652 30 100.0 36 .............................. ACGGTTAGTGTCGGCATTGGCTCATGGATGGATTGG 311586 30 100.0 39 .............................. TTTTCATAATCAACGGCATCCTCGCGCATCTCTTTGATA 311517 30 100.0 38 .............................. TTTCGTAAATAAGTTCAAGGCAAAGACCGCATGAGGAG 311449 30 100.0 34 .............................. TGAACTCCGCGCCCGACTTGATGGATACAACAGA 311385 30 100.0 36 .............................. ATCTCCCGCCTGTCCAATACTGCTTTTTTAATACTG 311319 30 100.0 35 .............................. CATGATTTAAGCATTCGCCCCTCCCCCAAAACAAA 311254 30 100.0 39 .............................. TCAACCCTGGAAACCAACCCAGTGAGCCAATTATCCAGG 311185 30 96.7 37 .........A.................... CTTTCCAGCCACACTGAAAGGCTGGCAAGGGAATCCT 311118 30 100.0 38 .............................. CTCATCTTCATCCATCCTTTCTCACGCCGGGAGTTTAG 311050 30 100.0 37 .............................. TACACTTCGTCAATTGCAGTAGCCATAATCGTCTTTG 310983 30 100.0 35 .............................. TCCGGATAGCGGACAAAAATAGCGCAATTGCCATT 310918 30 100.0 37 .............................. CCGCTACCGTAAGCAGCTCCCCATCATCTACACCAGC 310851 30 100.0 37 .............................. CTCGACTAACGGCGAAGATTCCCGCAACACATCCCCA 310784 30 100.0 35 .............................. TCAATATCTAACTCCAATGGTAATTCTAATCCCGA 310719 30 96.7 38 .................A............ AATGTTCAATGAAGCCGAGCAGCAAGCCACCGTGGATT 310651 30 96.7 37 .................A............ TCTGTTGGGGTAGCCAAGGATGAGGGGGACAAATTGC 310584 30 100.0 35 .............................. TTCTTTCATGTTCTTCTGCTATTAACCGAGTCCTT 310519 30 96.7 35 .G............................ ACAACTTCTACTTGTTTATTTTCCAATGTCTTTCC 310454 30 100.0 35 .............................. AGATAGTCCTGGAGACAGAAGATCCTAACGTCACT 310389 30 86.7 0 ..........C..A...A..........G. | ========== ====== ====== ====== ============================== ======================================= ================== 22 30 98.5 37 GTTGTTAGCTTACCTATGAGGGATTGAAAC # Left flank : GAGCACACTATCGAATAGACGGTATGCAGCGACTTTTGAAAGGGATAGGCATAAATTTGGGGGAGAGAAAATCCGGAAGATGAGGTATACTTATGTTTGTGATCTTAGTCTATGATATGGGGGAAAAGCGGGTAGCCAAAGCACTGAAGCGGTGCAGAAAGTACCTGAACTGGGTGCAGAATTCTGTCTTTGAGGGAGAGATTTCGGAAAGCAATCTGGCAAAGCTGAAGATGGAGCTGGACAGGATTATAGTGCCGGAAGAAGATTCGGTTATTATTTATACACTGAGGACGACCCGCTATTCTGAGCGGGAGATCATGGGCTTGCGAAAAGGAGGCCAGAATTTAATCATATGAAATTGTCGTCGATGTGCAGTAAGGTAAAAATCCCTGGAGATCGACGACAAGGGATGTCGCTTAGTAAGCGGCCTGCAGAGAATAGTGGAATTTTTGAGACGGCTCCAGGGAGCTGTAGATGTTGATTTTATGCGGGAAAAATGG # Right flank : CAATCAGATTAGGGAGAAGCAGGAACGGCTAAAAGCCGGACAGAAAGAGATACAAGCCAATCTTGAAAGATTGGAAATTGATGTTCTATCATTGCAGATGGATAATAAATCTATACATCGAAAACTTGATGTGATTGCGTCGGCGGTAGTTGTTGCCCAGGAGAGATCACAATGCTAAAGGCTCAATAAAATATGTAATACAGGAAAGAGTAATTATGCGGAGGAAAGAGTCTGTCCGAAATTGGTACGCGCGTACCTATTTCGGACAGACTCTTATTTGATGAAAAAGTAAAAAATTGTAACAGATAAAATGACGTGGCAGGAGGTCTAAATCTAGTCATCCTCTACCGCTCACCCCGGAGCAGGGGCAATGGCACGAAAAGGTTTTGAGAAAAAACCCGTCTATGAAGTATCAAGATGGAGCGGGAGAGCTGGACGATGAGTCGCGGCTTGTAAATTCCATTACCTTCATTTTGTACCACCAAAATAGCTCAGAGCGC # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTAGCTTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 2 318263-317431 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRDN01000007.1 Desulfitobacterium chlororespirans DSM 11544, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 318262 30 100.0 39 .............................. CTTATTTTGGCTTCCTCTAGCATCTGGCGAAGAAAACTC 318193 30 100.0 35 .............................. TCCTCCTCAGCCTTCTGGTGGGCAGCTACAATTGG 318128 30 100.0 38 .............................. ATAAAAAGAAGACGTGGGAACGTAAGCGAGAAAAGATA 318060 30 100.0 35 .............................. ATGTCAAAAGCGGTGTTATATAGTGCCAACCGATG 317995 30 100.0 38 .............................. TACCATGGGGTGCGACTGTGATGTAAGAACAAGTACTT 317927 30 100.0 35 .............................. TTCGACCTAACCCGCGTGTACGACAGCGCTAAATC 317862 30 100.0 38 .............................. CTTGGTGCGGGAAAGACTACCGCGAAGTAACGCCTTTT 317794 30 100.0 36 .............................. CTTAGGAACCGAGGAAAAAATACCAGCAGCAATTCA 317728 30 100.0 39 .............................. TTCTGATCAGTAATGATGCTGCCGCACTCTTGGCAAACA 317659 30 100.0 37 .............................. ATTTATGCATGTTATGCATGACTGCGCCTCCTTCCCC 317592 30 100.0 37 .............................. CATCCACCATCATAAAAACCGCTGTCAAGGTAATCCT 317525 30 100.0 35 .............................. CCTTATCATTGCTATTTTCTAAAAGGGTTTGACTA 317460 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== ======================================= ================== 13 30 99.7 37 GTTGTTAGCTTACCTATAAGGAATTGAAAC # Left flank : GTTGCATGGGATAAATTCAGCCTTGATGAAAAGGCTGTGAAATTTTCAAAGTATATGGAGGAGCCCTGGAAGATACATTGCTTTCGAGAAGGGAATACAAGAACTGTAGTGACCTTCTGCTGTCAATTTGCAGAGAGCAGGGGATTCAGCGTAGATAGAACATTATTTCAAAAACATAGCGCTTATGTAAGAACGTCATTAGTGGCAGCATTAGCCTACTTTTCGGAGCTAGGAGATAGAGCAAGCCTGAATACCTGATTAGAATTGTTAGGGACAGTATCGAAAGAGGACAGAGGAAAGCTTATCAGAGAAACGTTTAATTATAAGACAAGAAAGAGCATAAGCGTTACATTGAAGTTGTCGTCGATGTGCAGTAAGGTAAAAATCCCCGGGGATCGACGACAAAGAATGGGGCTTGGTAAGCGGACTAAAGAGAAAATGGCTGATTTGGTTAATCTTGGTCAATGGTTGTAATGGCTTATTTAATGCGGGCGAAATGG # Right flank : ATGAACTTGGTAGGGCTTTGTTTGATGTTCGTTATCTTGAAAAAAGTTTCAAGACCCTTGATAATTCCCTTAAGGCCTGTGAACAGAGTTTAAAGAATATATGTAATACATTTCGCTGGCTGCAGCTCCTGGCATTGTATTACATATATCCTTGTGGTAACATAAAAATTAGGAGGGATAAGGCATGGATGATAAATTAGATTTGATTTTAGACAGATTAACGGCAATGGATAGAGGCTTAAAAGCTGAGATAAGTTCTTTAAAATCTGAGATAGGTTCTTTAAAACCCGAAATAGGTTCTTTAAAATCTGAAACTCAGGCGATTAGTAAAAAGGTGGATATGACATGGAGAGCCATTCAGGAATTAAGGGATGATAAAACTGAGTTGAACGAACTTCGTAAGAGAATAGAAATTTTAGAATCAAAATTAGCAATGTAATACATACCCAGCTGGCAGCTCCGCGGTCGGCTTTGCCCGGGGATGGAGGCGAAACATCGGT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTAGCTTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 3 321264-320968 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRDN01000007.1 Desulfitobacterium chlororespirans DSM 11544, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 321263 30 100.0 36 .............................. ATAGGCTTTGGGGCGATAAGCACATAGGTCATTTTG 321197 30 100.0 35 .............................. ATATATGGCAAAGAGGTACCTCGGCTGTAAATCCA 321132 30 96.7 36 .....................A........ TGTCGTAACTGATTTTGTACCTGTTCTCCATTCTCT 321066 30 96.7 37 .....................A........ GAAATCAACTCGTCCATTCTCGACAGAACATCCTCGG 320999 30 83.3 0 ...............G..G..T.A.....T | G,A [320970,320973] ========== ====== ====== ====== ============================== ===================================== ================== 5 30 95.3 36 GTTGTTAGCTTACCTATGAGGGATTGAAAC # Left flank : CCTGACTAAGCCGATACTCTATAGGGTCTACCCGGAAGTATCCTATCCGGTGGCGGAGGGAAAGGAAATTGAGATGAGGACAGTTGTACCTACGGCTCTTATCCGGGAGATCGTTCTCAAGGCGGAGCGCTACTATTGCCGGGCAGGTGGGTATTTGTATGAGTATAAAGGGCAGCGGACCTTTGAGAAATCAGTGGATTTCCTTTATGAGAAAGATGGGAAGCCTATTGCGTTTATCCCTAAAAGTGATGACCTGGATTCGCCTTTGGATCTCAGAGTGGCGCAGTTCGGAGAGGACTTGGTATGTCTTGTTTAATGGCCTTGGCTTAATGAGCGGAGATTATTTTGCTATATGAAATTGTCGTCGGTGTGCAGTAAGGTAAAAATGCCTGGAGACCGACGGCAATGACTATGGCTTAACAAGCGGTTTGTGGGGAAAACGCGGATTCTCTGGGCTGAACTTGTTAAGCCATAAATGCTGATTTTATGCGGTAAAATGG # Right flank : GACAAGGGTGGGATTGCCCTAATGCCATGCGGTGGCCCTTCCAGGATGATAAAAGATGCACATTGGATATCAGAACTCAAGATACTGGGCATCACAACTGATTTTCAGAGAGGGGAGCATAAATGCTAAAGTTAACAGAGAAAAACTTAGATTGGGCATTATTGCATATTGAGAAATATGGAGATACTGATATTTTCCCAGTGCCATTTGAATTTGAAGCCATTCGTTATAGCTGGGAACAAGTTATTCGGCCTTGGTTAAGGAGTCAAGATATACTTCAGTGGATGCCAAGACCGTATAGAAGATGCCTGACCCCAAAGCATAGATATGGATTTCGCATAGCAACTCAACTGGACCCATTGGAAGCTATTGTTTTTACCTCCTTAGTAATGGAAATCGGTAAGGATATAGAATCAGCCCGAATCCCCAAAGAGCAGAATATCGCATTTTCCCATAGGTTTGCTCCAGAAGAAAGTGGCAGAATGTATGATACTGACTAT # Questionable array : NO Score: 8.74 # Score Detail : 1:0, 2:3, 3:3, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTAGCTTACCTATGAGGGATTGAAAC # Alternate repeat : GTTGTTAGCTTACCTATGAGGAATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 4 327037-326401 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRDN01000007.1 Desulfitobacterium chlororespirans DSM 11544, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 327036 29 100.0 36 ............................. GATTTCACTCACTTTCCAATTCCTCCGTTCTCATCA 326971 29 100.0 38 ............................. GATGTCTACAAAGAAGACATGTGCTATTCTTTGGCAGA 326904 29 100.0 40 ............................. GCCAACTCATCGGGCTGCTCCCGGATGATTCGAAAGAGGT 326835 29 100.0 36 ............................. GCTCCTGACCAAAGGAAATTAGGCAAAGCGGCAGGG 326770 29 100.0 39 ............................. GAGGCATTGCATCCGGCACATTCAAACAGAATATACATT 326702 29 100.0 39 ............................. GGAGCTTGCAGAAGAGAAGCGAGTAAGGGTGGAAGAAGA 326634 29 100.0 38 ............................. CTACTTACTGTCGAGTCGAAATAAGGGGAATATTCACC 326567 29 100.0 38 ............................. CTCATTGTGGTCATTTGTAATCGTTCCCCTTCTTTCAT 326500 29 96.6 40 .....................A....... CCCGTATTCTTTGAGCTGAGCATGAGAAAGGCCGGTAAGT 326431 29 82.8 0 ..T.................T.....TCT | CC [326404] ========== ====== ====== ====== ============================= ======================================== ================== 10 29 97.9 38 GTCGTTAGCTTACCTATAAGGGATTGAAA # Left flank : ATGCAATAAGGACTATCTTGGAAATTACTTACGATGGTCTTTTTAGAAAGTGAAATGAGAATCTATGCAATTCCGAAGCTGGCTTATCGATTGAGCATGGGACTTTGAGAGCTTCATTCAAGTCACCTCCTGCCGCTCATTCTAGAGCAGAGGTGGTTACACAAAAAGGTTTTAAGAACTCTGAGACAAAATCCTTTTAAAGGAGTTTGTCTTTGATTTCATCGCTTTATATGCTAACATTATTTTAGTAGGGTAAAATTGATGACCTGACGCTAAAGAGGTGAAAGAAGAGATCAGCTAGAGTTTATGATTCGAAGTACATGAGGTTAGTAAGCGGTTGGATTCAATTATGTAAATTTGTCGTCGATGTGCAGTAAGGTAAAAATGCCCTGAGACCGACGACAAAGAATATGGCTTAATAAGCGGATTGAGGAGCAAAGGGTTAAGTTAGGATAATTTTGATGTTTGCTGGACTTGCTGATTTAATGCGGGTGAAATGG # Right flank : CGATAAAACAGACACTCCAGAGTTAGAGATTCTCTCAGAATCGCAAGATTGCTTCTTTTTTCATCTCAGGTAAATACTCCAAGCTGCTCTCTCAGGGGCCCGCCCCTGAAACCCCGCCTCCGCCGGGTGGCAGAAGAACGGTCTTTAAACTGTTCTGAGGCATAAGGGTCTTTGGCTATGTTAGCCAATCAGGGGCAAGGACTTTGTCTCGGCTGACGCCGCCCCTTGACAAGCATTTACTGAGTTGATAATCAGCATCACAGATAAATTTCCCCCGGCAATGGTGTCAGGTGTGACAACATTGCCGGGGAATTCTATATTAAGGGATTAGATATGGAGAATAAAAGCAGGCTATGATATACTATTTCCATACAATGGATATTGAGGCCGATAGTGATAGTTTCATAACGGAGGATGATCACGATGTCAATGGACGTAGCGGAGATAAAAGATAAGCTTTTCCCTATATTTGAGGCTGCCCCTATTTACCAGGCGATACT # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTTAGCTTACCTATAAGGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 5 336737-335853 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRDN01000007.1 Desulfitobacterium chlororespirans DSM 11544, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 336736 30 100.0 35 .............................. CCTGAAATACAGCGAGGGAAAGCCGGTTGAGTAGT 336671 30 100.0 35 .............................. CGTGTTCGAAGCTTGAGCTTGACCGCGCACGTTTC 336606 30 100.0 38 .............................. ACAGTATCGTATAACTTCCTGACGCACACTTGGCACAG 336538 30 100.0 35 .............................. CCTCTATCCTTGGCATCTCTCCGCGCTCCGCCATC 336473 30 100.0 35 .............................. TTCATATTTGTCTGTATCCCATGCTGCATATAAGC 336408 30 100.0 37 .............................. ATGGGCAGTGGTGGAGAAGCAATTGTCACCCGTGGTA 336341 30 100.0 36 .............................. GATGATAACATCTCTTTTCTCCTTTCGGCCTCTTCC 336275 30 100.0 37 .............................. TTCCTGCAGCCCGTTTAGTTAACGGCCTAAGGTTCAT 336208 30 100.0 35 .............................. ATCGCGCCGGGCGGCCCTCAAGGCTTCATTCGAAA 336143 30 93.3 35 .................A...A........ CACCTACTAACTAAATATATGGTTTAACCAATTCC 336078 30 93.3 34 .................A...A........ AAGAGTACCAGGGGACGGATGAGGTCTCTCCGGA 336014 30 100.0 36 .............................. GCAAGCTGAACGGCTGCAGCAAGTTTCTCATCGATA 335948 30 96.7 36 .................A............ AGCCAGGGCACCGTCGAAATCAATCTTCCCATCCAC 335882 30 93.3 0 ........T............A........ | ========== ====== ====== ====== ============================== ====================================== ================== 14 30 98.3 36 GTTGTTAGCTTACCTATGAGGGATTGAAAC # Left flank : GGGCCGAAAGAGCTGCTTCAATTGGCCGTCGATGGAGGAATAGGAAGTAAGAACAGCCAGGGGTTTGGGTGTGTGGAGATTATCAATGGATAGTAAACGTCGTCGCTGGGTCTGTCCGAAATAGGTACGCGCGTACCTATTTCGGACGGACCTTTTCCTGGCAAAGTGATACTGGAGTTTAGTATTAAAGAGTTTACTTTTTCAACAATCCCAGAATTTCGATTTTGATCTAATCCCTTGCTGTGCTAATATTAACATGAGAGATGGGCCTGATTTCGATTTAGATAAACTAGCCGGTTTATTACTTCTACCACTAGATTAGGGGGAGGATAAAAGGCTAGGTTTTAATCGTAGCTCTTGTCGTCGATGTGCAGTGAGGTAAAAATGCCCGGGGATCGACGACAAAGAATATGGCTAAATAAGCGGGCTAAGAAGAGAAGTGCTGATTTGGTTAATTTTGGTCAATGGCTGTAATGGCTTATTTAATGCTGGTGAAATGG # Right flank : TGCCAAGTATCGATCATTCCATTCCAAGCTTAACTACGTAGAAGGAAAGGTCTGTCTGAAATCAGTACGCGCATACTAATTTCGGACAGACCTTTTTATGAATGAAGGAGGGTCTGGGGATAGTTCAACTGTTTCAAGTGAGAGTACTTTTCGACAATAACCAATTTCTTGACAAAAGCCACCGTCTATTCGGTAGTTTTTCATCAACTGAAGCGGGTAAAATAGTTCGAGAAACATCCTGTGTCTCAATGTATTCACTTTCTCCATCACGCTGGGCATCCTGAAGATGATTGCTTACGACGATTTTTTTATGAAGTGAAATTAGAATTACTGGCTTTATGGTTGATTTGGTACGGGTAAATGGTTTTTGGCTTACTTTGTGAGGGCTTGAAATTGGTAATCTCTCATCCGCAGGTATCAATCCTTATAACAGTTATAGGCTGAGAGAAAAGTCTGTCCGAAATCGGTACGCGCGTACCAATTTCGGACAGACTTTTGTT # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTAGCTTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 6 341011-341238 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRDN01000007.1 Desulfitobacterium chlororespirans DSM 11544, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 341011 30 96.7 35 .....................G........ CTTATATCACTTTGGGGGATGCCCGTCTTGGCCGA 341076 30 100.0 37 .............................. ACTGGCTCTCCGTAAATATCAACTGCTCTCCAACACA 341143 30 100.0 36 .............................. ACCAATGCTTGTGGTTCCCCGGCTCCTTTGGCAAAC 341209 30 70.0 0 ...............TAA..T...G.TCGA | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 91.7 36 GTTGTTAGCTTACCTATGAGGAATTGAAAC # Left flank : CCGCATAACCGGTATGCGAACAATTCCTTTCCGCTGCCTGGGTCAGGAATAGGCTGAATCTCCTGCTGCGTGAAGCCGCACAGTCTGCTCTGTTCCCTGCCGGCACCTCATTACACTCACTTCACCCGCGGCACAGGCAGCTTGCTTGTGCAGAAAGGGGCGGCATTGTATAATAAGAATGTCGTCGTGGACAGCTGGACTGTTACGTGTAGGTGCTGTTCCACCTGCTCGTGCCTGGAAGTGCTCCAACACTTTCAGGTCACGGCGACTTTTTAATTTCCACCTATTACTAATTATAGCTTGTTTGAAGGAAAATGCAAGGGAGCATGCATATTGGCTAAGTTTATGGGAACACGGAACACCTTGCCATCTGGAGCCGGAAGCCCCAGATATATACTATAAAAAAGGCCCGGATAGGTTGTCTTTTGTTCTTATTTTCTTATCAATCCTTAAAGGGTTTGAAACCGTCAATTAACAGGCGATCCAAGTCCTCGCGGTCC # Right flank : ATATCAAGCAGCCAAGTGAAACCAGTAGAAAAAACCTGACCTCATTCAGTATGGATTGCTGGGACTGGTTTCAAACCCTATGTATTTCCGCCCCTGTTTGCGGTGGCCCTCAGTGTCCTGCTGCCCCCCTGCCTATCGCTGCTTTAAACATCATCAGATTGCCTAGGCCGGGCCTAACTTAAATCTCCTTGCACTTCGGTTTATAAAAGGTCTGTCCGAAATAGGTACGCGCGTACCAATTTCGGACAGACCTTTTTGCTTAAAGCCACTCCAGTGCATTTAAGCCTATGCCTTAAAATCAAAGCCTATCCCTGTTCGTTCAGTGCTGTCAGGTCTAACAAGACGTTATTTCCCGATCCTGCCACGCCGGGAGCTTGCTCAAGGTGCGGATGGCCGTCTGCCGGGCCGCCTCTTGGTCCAGACCTTGAGTGCGAATGAGAAAATCCGTCATCCCCTCCACTTTCTCCGGATAAGACTGCATGGAGCCGTCGGGCCTCGCG # Questionable array : NO Score: 8.45 # Score Detail : 1:0, 2:3, 3:3, 4:0.59, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTAGCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA //