Array 1 127-676 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBZI010000030.1 Clostridioides difficile strain HC132 NODE_30_length_42543_cov_21.6614, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 127 29 100.0 37 ............................. TGTATTTGCCTAACACGATACAAAGAAAAAAATAAAG 193 29 100.0 36 ............................. TATAGACTGGTACATTATTATTAAATATATTTATAA 258 29 100.0 36 ............................. GCAGTAGCACCAGCAACTATACCACCATTCGCACTA 323 29 100.0 37 ............................. ACTAAAGACATAAGGTATTATCCAAGCAGTAAAACCA 389 29 100.0 37 ............................. GTTATCAATATTTCTTTCTTCTTTTTAATACAAAAAT 455 29 100.0 36 ............................. TACCTCTGCTGTTTGCTTATTGCAAGGGATTCCATC 520 29 100.0 35 ............................. CAAAAAACTACTTTTTTATTATAAACTTTAGACAT 584 29 100.0 36 ............................. AAATGTTTTAATAAATCACTTAGATAAAAAGATGCA 649 28 82.8 0 ................A...GC.-....A | ========== ====== ====== ====== ============================= ===================================== ================== 9 29 98.1 36 GTTTTATATTAACTATGTGGTATGTAAAG # Left flank : TAACAGTTGAAATATAAGGCATCGAGAAGGTTTGATAAGTGTTATCAATTGCACTACTAGCCGCTCACTGCAAATTTAAGAGAGTTGTATATGTGTAAGTATTGAAAATGCTAAGTTTATTTTGGGG # Right flank : ATTAAAAATACTAAAAACACTTACTTAAATAGTAGGTGTTTTTTTATTGAAAGGATGTGATTATAATGAAAAAAGTAATATATGGGAAAAATATGTAAATATATATGTTATAATATTTTTAGCAAGAAGATGTAATCTACAATTTATAGAGTGGAGTTCATACAAAAGATTATCCTCCCAACGTATAGAAGGGAGGTGAGTATGTATGGATAATTTTTTATTTAATGTGTTAGCTAGTGTAACAGCTAGTTACATAGTTTACTTGATTAGCAAGTTAATCAAAAAAGTAAAAAGCCACTCTACCGCAAAGAGTGACTTAAAGATTGATATAAATTTTAAATATCATCGTAAAAAATAAATTTCAGTTATAGAACTTCACTCTACCGCAAATAGATTGTAGTTCTTCTTGCTTTTATTATACCACAATAAAAAAATTTTAACATTAATTATTATAAACAATGATAATGAATCTAAATTAATGAATAAATCTAATTGTAAAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 2389-3657 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBZI010000030.1 Clostridioides difficile strain HC132 NODE_30_length_42543_cov_21.6614, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 2389 29 100.0 37 ............................. TAAAATTTATTAAACCAAAAAACATCAATTTGATTAA 2455 29 100.0 36 ............................. AACGGCAGAGAAAGGAAACTTAGTAGTAAATTTAGA 2520 29 100.0 36 ............................. GTAGCAAATTTTGCTAAAAGGTACTATTATTGTAGT 2585 29 100.0 36 ............................. GTAGTTTTAAAAGCTAAAAAGTTAGGAATGATAATA 2650 29 100.0 36 ............................. TCTCTTAATCTTGTAAACATGTCGATAGCTGCTTGT 2715 29 100.0 37 ............................. ATTATTTTTAGAAGCGATTTTGACAACATAAGAGCTA 2781 29 100.0 37 ............................. AATGTATGGAGTAAAATAATTGTAACTGACATGTCTC 2847 29 100.0 36 ............................. TTAAAAATAATATATCAGCTTTTTTATACTTCGAAG 2912 29 100.0 37 ............................. AAGACAATTTTAGAGTCTAATATAGTGTCACAAAGTA 2978 29 100.0 36 ............................. TACCTTCAAAGCTTATTTTGAAGATATATATTTGTG 3043 29 100.0 36 ............................. AGTCCATATGCGTTTTCCCTTCTCTTGTTAGTATTC 3108 29 100.0 36 ............................. TTACTTTTATGCTTCTTTTCCTTTAGCTCTGGTAAA 3173 29 100.0 36 ............................. TATTATATCTTTCACATTCCTGTCTTATACAAGCTA 3238 29 100.0 37 ............................. CATCAACCAAAACGGTATATGTTGTATATGATGTGTG 3304 29 100.0 36 ............................. ACACTTAAAAATTTATTTTGCTAATCCTTTAAAGAA 3369 29 100.0 36 ............................. TTAGGTTTACATGTTTGAAATACAAAGTCAAATAGA 3434 29 100.0 35 ............................. ATCTAACATTTCATTTAAGATTCTTTTTTTAAATC 3498 29 100.0 37 ............................. CTTCTATATTCTCCATATTAAATACAAATATATCTAA 3564 29 100.0 36 ............................. GTATTATTGGATGAAGGATTCTCTCAAATAATTTCT 3629 28 89.7 0 .......................-A...T | G [3655] ========== ====== ====== ====== ============================= ===================================== ================== 20 29 99.5 36 GTTTTATATTAACTATGTGGTATGTAAAG # Left flank : TTTAGCAAAATTCGAAATAATGTAGATGAAGTTGAAAATATATATTTTCGAGAAGAAGAGGTTGAAACTAAAGAAGAAGAAAAGCTACGACAAGAAAAAAACAATGATAATAATTATATTCGAAATAGTGGAATTGACCCACTAGATAGAATAAAGAAACTAAAAGAGTTGTTAGACTCAGGTGCAATTACACAGGAAGAATATAATAAAAAGAAAAAGGTATTATTAGAATAGATAATATAGTAAGCACTTACAAATATGTAGGTGCTCTTAAATTGATAAATTATTCCATTTTAATTTTATAGTTTGAATTTTATGATATAATAAAAATATAGAAATTTTGCAGTGAGCGATATTTGTGATAAAGTAGGCTTTAACAGTTGCAATGTAAGGAATTGAGGGGATATGATAAGCGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGTTGTATAGGTGTAAGTATTGGAAATACCCAATTTATTTTGGG # Right flank : TTATTGTTGTTTTTAAAAAATTTTAAATCAAAAGAAGAAAAAGACTATGATAAGTATAAATTTGATTTTAACTATCATAGTTTTTTATTGTTAATATAAGATATTTTTAAAATATATTATAAAAATAAGCTTTAATAAAAAAATATAATAAAAAACTCGATTAATAATACCTTTAATTGGAAAAAACTTCCAACTGTCTACAAAATTCGATTTTTTTATTACAATTACGCTTTTTTTATTGCATTAGCAAATCAAAAGTATTATTATGTAAGTAAGATAATTATCTAAGACAATTCTGAATAATCTAAAAATATTTCTAGAAATGAAAGGGTATAACTATATAATTTTTATTAAAAATTTATTGGAATTTTGTGACTAAAAATAAGAACGTAAGTTCTTGTAACAGGGGGATGGTATATGTGCAGTATTCAAAAAGATTAATATTAGAATTAGAGAATTTATTTAAAAACTTTAAAGAACTTGAGGAAGAGGAATTTGAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 231183-229123 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBZI010000001.1 Clostridioides difficile strain HC132 NODE_1_length_291280_cov_32.0586, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 231182 29 100.0 36 ............................. CAATGTGGATACATTTTTAATTAAAAAAAAACTTAC 231117 29 100.0 36 ............................. TAGAAAAAGCAGATGATAAAATTGATAAACTAACAG 231052 29 100.0 35 ............................. ACATTTGAACATGGTGAAAATATAATAACATACAC 230988 29 100.0 37 ............................. AATACTAAATTTAAGCTTTCTTGATTAGCTAGTAATA 230922 29 100.0 38 ............................. TATTCTAACAACAGTTGCTTTATCTTCATTGATTATAA 230855 29 100.0 37 ............................. GCGAGTATAATATATATATATATATACTTATTATATA 230789 29 100.0 37 ............................. ATAAACTCTTTTGATTTTTTCATCTCATCATCTTCCT 230723 29 100.0 37 ............................. CTTTTCTCATGTCTTTGTCAAAGAGACAGTCTATAAA 230657 29 100.0 37 ............................. CTGCACTATTTAACACCCCTTTTATTTTTATACTTGC 230591 29 100.0 36 ............................. TTATGTGTAAAATCTGTTTCACTTCCATTATAAAGC 230526 29 100.0 36 ............................. ATAAGCGGTTGGTAATATATCTAAAACCCTCATTTT 230461 29 100.0 36 ............................. CGACAATTCTAAGCTATAGTTATGTTCTAACACATA 230396 29 100.0 37 ............................. TAAAAACATGGTATTTTAGGTATGTGGAAAATAAATT 230330 29 100.0 36 ............................. GTTTTAGATAAAAACCTTTCTAGCTTACGTGGTGCT 230265 29 100.0 38 ............................. TGAGTATTTCCTGCTCTAACTCTGTAATACCAGGTTTG 230198 29 100.0 36 ............................. GTTGCACTCATGCTCCATAGCTTCAACGACTTCTTT 230133 29 100.0 36 ............................. TTGCAAGTAGAAGACACAATTTTTACCCAAACTAAA 230068 29 100.0 37 ............................. CACCACAACATGGACATTTCACCATTTTACCTTTTTT 230002 29 100.0 37 ............................. GTAAATTTTTTATCTTTAAATGACTGTAATATAACTG 229936 29 100.0 37 ............................. ACTACGACGAATAGTTAAGTAAATAGTAATCTTTTAC 229870 29 100.0 37 ............................. CATAACGGAACTTATTTGTTTATCACTATTACTACTA 229804 29 100.0 36 ............................. TCAGATATAGAAACACAAGGAGAAATTAAGATTATG 229739 29 100.0 36 ............................. TCACCAGTCTTTGTTCCAAATTTATTCATGTAGTTA 229674 29 100.0 36 ............................. GTATGTATAAATACATCAACAATCTTTTCAATGTCT 229609 29 100.0 36 ............................. TCTATCGAAGCCTATTTCTTGAGTTTCTAATTCATA 229544 29 100.0 37 ............................. CTAAATAATACACTTGTTGAGTTGTCAGAGAAAATCA 229478 29 100.0 36 ............................. TGTATGGGATTTAAATATGCAGTTATATATGGTAAA 229413 29 100.0 37 ............................. AAAGAAATTATGATTGGTGATTCTTCTATTTTTGATT 229347 29 100.0 37 ............................. TTAAGGTAAACTAAGTAGGATGATACAATACTCAAAG 229281 29 96.6 36 ..................A.......... TTGCATATCCAAAAACTTTATTTGGATAATTATTTT 229216 29 89.7 36 ..................T..G.A..... ATAAAATATAGCCTATTTTTAGTTTTAAATTCAATT 229151 29 86.2 0 .................CA....A....T | ========== ====== ====== ====== ============================= ====================================== ================== 32 29 99.1 37 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : ATTTTATCAATGATGAAAAGTATAAAGTTTTAAAGGCATGGTGGTAAAGTATGTTTGTTATTGTTACTTATGATGTTGTTGAAGCAAGGTCATTAAATCGGATTAGAAAAATACTTAAAAAATATTTGACTTGGACTCAGAATTCTGTTTTTGAAGGAGATATTACTGATGGGAAGTTACATAAATGTATTTCTGAAATAGAAAAGATTATTGATAATAGTGAAGATTCGATTTATGTTTATGAGATAAAAAATCCTAATTCAATTAAAAAGAAATGTTATGGTATTGATAAGTATTCTGATGAAATGTTTATATAGGTTTGCAGTGAGCGATATTTGTGCTAAAATAGGGCTTAACAGTTGGAATATAAGAGATTGAAGTGGACTGATAATTGTTATTAATTGCACTATTGCTCGCTCACTGCAAATTTTGATGTTTTTATTGAATCATGATTGCGTGAGTGTAGTATTTTCAAGCTATTCAATTACACCTATTTTGGG # Right flank : GAAGTAAACTTATACTATAAATAAAAATCAACATAAAAATGAGGTGGAATAAAATTTATGATAAGAAAATTAAATGACAAAGATATAAACAAAATCATGGAAATATGGAAAGAAAGCACAATCAAAGCACATGACTTTATAAGTAAAGAATACTGGGAAAATAACTATAACACTGTCAAAAACGAATATATACCTATATCAGATACGTTTGTATATGAGGATGGTCAAGAAATAAAAGGATTTATAAGCATAATAGAAAAAAGCTTCATAGGAGCCTTATTTATAAGTACAAACTATCAAAACCTAGGTATAGGAAGTAAACTTTTAGACTATGCAACTAAAGAATACAAGAATCTAAGTCTAGCAGTATACAAAGACAATAAAAAAGCAGTTGGATTTTATAATAAAAAAGGATTCAGCATAGTAAAAGAGCAAATAAATGAAGACTCAGGATTTAAAGAATACATAATGGAATATAGTAACTAATATTAATATATTCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 33-191 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBZI010000313.1 Clostridioides difficile strain HC132 NODE_313_length_224_cov_2.78351, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 33 29 100.0 36 ............................. GAAAACGTTAAAGATTATGATGTTGCTTTTGATTTT 98 29 100.0 36 ............................. TGTACTTTTTTCTTGAAAACTATTTTTTAATTCTTC 163 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ==================================== ================== 3 29 100.0 36 GTTTACACACTACATAGTCATTATAAAAC # Left flank : GTGAAGTATGGATTTATTTTTTCTAAGAATACG # Right flank : ACGATGAGTATTGTTAAGTATCTAAGATAGGTT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACACACTACATAGTCATTATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 128-1334 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBZI010000055.1 Clostridioides difficile strain HC132 NODE_55_length_6649_cov_35.3458, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 128 29 82.8 35 ........T.A.......G..A......G CGATTAAGTCAATCAGAAGTTAAAGAGTGTTTGAA 192 29 100.0 36 ............................. AAAATCAAAAGCAACATCATAATCTTTAACGTTTTC 257 29 100.0 37 ............................. GTATTCTTAGAAAAAATAAATCCATACTTCACACCCC 323 29 100.0 36 ............................. TATGCCGACCAAGTGTTTATGGGTACAATAAATTAG 388 29 100.0 37 ............................. GTTAAAGATGATGGAACAACTAAAACAACTAAAACTA 454 29 100.0 36 ............................. AGCGATAAAGTTAGCAAAATCACTAAAAATTTAGAC 519 29 100.0 37 ............................. AACGCTCTTACTTCGTCTGCTGATTGAGATTCGTCTA 585 29 100.0 37 ............................. CTCTGCCATGTCTGTAATGTTTCCAACTTTTGCTATA 651 29 100.0 37 ............................. ATTTGTCCTTTTCAGATTATTAGAAATAATAATTTGA 717 29 100.0 35 ............................. CAGAAACGGTCGTTAAAAGATTTGTGAATGGAGAC 781 29 100.0 37 ............................. TTGAAATCTGTTTCTTTTTCTAACTCTTTTTGCAAAG 847 29 96.6 36 ................A............ TAATAGTATTCTTCTCCTTCTTGGTACTTCTCTGGT 912 29 96.6 38 ................A............ AAATTTATAGTGTTGCTAGAAGAATTAACACTATTTGG 979 29 100.0 37 ............................. GGAATGACCGCATAGAATTGATGTGAACAGTTCCAGC 1045 29 100.0 36 ............................. TTGTTTTAACATTAGTGTATCGGCTGATGAAAATGT 1110 29 100.0 38 ............................. TACATAACCTATCTTAGATACTTAACAATACTCATCGT 1177 29 100.0 36 ............................. GAAGAATTAAAAAATAGTTTTCAAGAAAAAAGTACA 1242 29 100.0 36 ............................. TCAAACAACAGTATTCCTCGACCACGAGGCTAAGCC 1307 28 79.3 0 ..................-.CA.CC...A | ========== ====== ====== ====== ============================= ====================================== ================== 19 29 97.6 37 GTTTTATAATGACTATGTAGTGTGTAAAC # Left flank : TAACAGTTGAAATATAAGGCATCGAGAAGGTTTGATAAGTGTTATCAATTGCACTACTAGCCGCTCACTGCAAATTTAAGAGAGTTGTATATGTGTAAGTATTGAAAATGCTAAGTTTATTTTGGGGG # Right flank : AAACCTTATAGTAATTAAAAATAAATGTTTATAAATAACACTTACTTAAATAGTAGGTGTTTTTTTATACAAAAAATCAAAGGAAGTGAGTTTATGGTAAGAAAACTGCGGTGTAGTATTTAAAAATACTTTAGAAAGGAAGTGATAACTTGGTAATAGACATATACCTAAAAAATGAAAAAGAAAAAATAGATTTTCATTTTCCAGTAAACCCACAAGATTTTCTATCTATTAAAAAAGAAAAAAGATTTGAAACTGTTGATATAGTGAATTTAGGTGAATTTGACATTAAAAAAGAAGGAGAGAAGATAAGAGAAATATCATTCAAGACATTCTTACCAAATTTATATGATGCTTCTTATTGTAGATATAGCGAGTTAAAAAATCCAATTGAAACAGTTGCAATGCTTGAAAAATGGGTAGACCAAGCCGAACCTCTAAGACTTATTATAACTGGTTTTGGCTACAATGGATTAGTTACAATATCTAGTTTTAGCAAT # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATAATGACTATGTAGTGTGTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [5-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 79746-81216 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBZI010000016.1 Clostridioides difficile strain HC132 NODE_16_length_91798_cov_31.0196, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 79746 29 100.0 37 ............................. GTACAAAATAGAATCTTAGGAAAATGTACTTCCACTA 79812 29 100.0 38 ............................. TATGCTCTTTTTTTAAAAATAATTTTACAAAACGACAA 79879 29 100.0 37 ............................. AATAAAAAATTTAACATAAAAACACCTCTAACTTTTT 79945 29 100.0 36 ............................. TGGGTAACTATGTCCATTTTCCAAAGCCTTAAGGTT 80010 29 100.0 35 ............................. TCAACTATTTTTTCATATTGCTCCCAAGCCTTATC 80074 29 100.0 37 ............................. TTGTAAATCATAACAACATTGATGCTTGTGTAAGAAC 80140 29 100.0 36 ............................. TCAACAGGCATAAAATGTATATATTTATAATCTTTT 80205 29 100.0 37 ............................. TTGAACACTTTATAACCAACTGAACCTAATACATATA 80271 29 100.0 36 ............................. CTTTTCGTAATATGACTAATGCTATGAATATAGTAA 80336 29 100.0 37 ............................. AAATCATCTATAACCTTATTATTTATTTTCTGCGATA 80402 29 100.0 36 ............................. ATAAGAAAATGCAATATCATAATCTTTAACATTTTC 80467 29 100.0 36 ............................. TTAGAGGGGGAGGAACAAATTTCCAAGACGAACCAA 80532 29 100.0 38 ............................. GGGATTTTGTTTAGTAAATCAACCAGTTTATTTACACC 80599 29 100.0 36 ............................. ATACATCTACAAACAATAGCTTTAAAGCAGATAAAC 80664 29 100.0 36 ............................. CAAAATAAGCATAAAAATAGACCTTTCCAAAATGTT 80729 29 100.0 36 ............................. CAAAGTATATACCTCCCTCATAAAAAGACTAAGTTT 80794 29 100.0 36 ............................. AGTCTTAACATATACAAATAAAATCCTGCACAAAAC 80859 29 100.0 37 ............................. TTAACGAATGATATAATTGCTCCAGCAGCATCCTTTT 80925 29 100.0 39 ............................. ATTACTAATATCGCACTAGCTAAGACATTCATTTTCAAG 80993 29 100.0 36 ............................. CAGATAATAAGAAAGAACTAAGTATATATAATCTAG 81058 29 100.0 36 ............................. AAATGCTTGTAATGAAGCACAAGAGATTTTATCAGT 81123 29 93.1 37 .............A.T............. TCGTTTATCATTGCTAGCCTAGCATTCGTACTGGTCA 81189 28 82.8 0 ...............T....-.CT....A | ========== ====== ====== ====== ============================= ======================================= ================== 23 29 99.0 37 ATTTTATATTAACTAAGTGGTATGTAAAG # Left flank : AATTTGTAAAGTATTTACGCAAGTAAAAAGCCACTCAACTCGCGGCAAGAGTAAAAGTGGCTGGGAATTTGATTTTAAAATCAAGTTCCACAAATTTAAATAATTACTAATTGTTTAAATTATGAACTTCACTCTACTGTCAAATAGATTGTAGTTCTTCTTGTTTTTATTATACCACAAACTGGCATAGATATTCAAAAATAATATTTTTTATAAATAATGAAAACTAAATAGACAGTATAGTAAGCACTTACAAATATGTAGGTGCTCTTAAATTGATAAATTATTCCATTTTAATTTTATAGTTTGAATTTTATGATATAATAAAAATATAGAAATTTTGCAGTGAGCGATATTCGTGATAAAGTAGGCTTTAACAGTTGCAATGTAAGGCATTGAGAGTGTATGATAGGTGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGTTGTATATGTGTAAGTATTGAAAATACTAAGTTTATTTTGGG # Right flank : ATTAAAAATAATCAAAAAACACTTACTCAGGTAGGTGTTTTTTGATTGAAAGAAGGTGATTATAATGTAAAAATTTTACTAATATAGTATAATAATCCTATAAATTCATTATAATAAAGGGGGATATTATGGGATTATTTAGTGGAAATGAAAGTTGTTGTATATGTGGAGAAAAAGGTAAACAAAAAATATCTGATGGTGTAATATGTTCTGAATGTTTAAAAAAATATAAAGATACATTTTCTATAGTCGAACCAACAGATGTAATTAAAAAAATATCTTCTGAGGAAATAAAAAAATCAATAAGATTAACACTTGAAAATAAAAAAAGATTTGAATCTTTTAACGCAAGTAAAAAAGTAGGAATTTATTTATTAGTAGATGAAAATAAAAAACAATTAATTATATCTGATAAAATAAGCAATTTAAATAAGAATAAGAGAGTATATGACTTTAGGGATATTATTTCATTTGAACTTTTAGAAGATGATGAATCTATA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //