Array 1 108317-105356 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXCP010000007.1 Salmonella enterica strain LB1 contig00007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 108316 29 100.0 32 ............................. CCCCACAAATCACTGGTCGATTTCGTCGCACG 108255 29 100.0 32 ............................. GTTGCGACTAAACCGGACCAGCGCCCGCCCAC 108194 29 100.0 32 ............................. CCAGTGCTCGCTTGCTTCTACCCGTCCCGATC 108133 29 100.0 32 ............................. GCGGTTTTATTCGGCAGGGCATTGAATTTAAT 108072 29 100.0 32 ............................. AATTATCTATTTTTCTGGCCCGTTTTCAATGC 108011 29 100.0 32 ............................. CCCGCGTTTTGCGTCAGCATATAGCCAATATG 107950 29 100.0 32 ............................. GCTTTGCATACGTCACTCATAGACAAATCACG 107889 29 100.0 32 ............................. CGATTCTGGTAACGTCGCTGTACTGCCTGACA 107828 29 100.0 32 ............................. GGCGCATGAAACAACCGGCGGGGATCTCTATT 107767 29 100.0 32 ............................. ACAGCGTTAAAATGACGCCCGACGTTGTGGTG 107706 29 100.0 32 ............................. AGGGCTAACACATCACCATTATTACCAAATTC 107645 29 100.0 32 ............................. GACATTGCCCGCTGGGATGCGCGGCAACTGGA 107584 29 100.0 32 ............................. AATTGCCTTTGCTGCCCGGCTCTTCTACGGTC 107523 29 100.0 32 ............................. AGATGAATAACGCGATTTACGAGGTTACGTAT 107462 29 100.0 32 ............................. ATTAAATACCTGGAAAAATACCCCAAAGGGGC 107401 29 100.0 32 ............................. AAAAATAGCGATAACGCGCCAGATCGTGAGGT 107340 29 100.0 32 ............................. TCATTTTTTATTTTCACGTTCGGCTTTCTCAC 107279 29 100.0 32 ............................. TTAAATCGACCTACCTGTTAAACGCGTCAATG 107218 29 100.0 32 ............................. TTCGCAGTAACAGTGTCGTTTTTATAACCGAC 107157 29 100.0 32 ............................. GCGGCATTAATGCGGGATTGTGTTTTCTGAGC 107096 29 100.0 32 ............................. ACGGCAGAAACAATGGCGTCAGTAGCTCAGGA 107035 29 100.0 33 ............................. CAGTCAATGAGACTTTTCACACTGATAATGTTG 106973 29 100.0 32 ............................. CCCCTATTCCTGATCATCGCGCATTTGGCGGC 106912 29 100.0 32 ............................. ACCACCACGTAGCCGTAGGCTGTCGCCAGTTG 106851 29 100.0 32 ............................. GAATTACGTTGCGAACAGCGCGGCGAGAGACG 106790 29 100.0 32 ............................. CGGATTGCATTCAATAAACATGTAAATAGGAA 106729 29 100.0 32 ............................. TTACCGACACCTGCGTGGCTAGCGTTTTTTCG 106668 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 106607 29 100.0 32 ............................. CCTGCGTGCGTGCAACGGGTAACTAAGGGGAA 106546 29 100.0 32 ............................. CATTGGGTAATTATATTCGCAATTTAAGCGAT 106485 29 100.0 32 ............................. ATATTTTAAACCAGACTGACGCGATGATCGTT 106424 29 100.0 32 ............................. CCATCAAAGCTGCTGCGCTGGTGGCATAACCC 106363 29 100.0 32 ............................. ACTACGCGGCATGGCTGAACCCCGGATTCAAG 106302 29 100.0 32 ............................. CCCCAGGCGGTGCCTACGTCGGATGAAGAGCC 106241 29 100.0 32 ............................. CCGTGGAAAGAACCAGAGCGTTGGTTATTGGT 106180 29 100.0 32 ............................. CTCCCAAACCTCTACAGCGCTACCAACAGGAA 106119 29 100.0 33 ............................. GATCGCCCACCGGCATAAACGCGATAGCCGCGT 106057 29 100.0 32 ............................. CTGTTCCCGATCGCTTTATATCGGGGGCCATC 105996 29 100.0 32 ............................. TACCAGACGGACAGCTACGATACCGCTGACGA 105935 29 100.0 32 ............................. GCAGTACTGGCTCTAAATTTAAAACTGGTCAG 105874 29 100.0 32 ............................. TGGCCCACGTGCGCGGAGACGGCAACCGGTTC 105813 29 100.0 32 ............................. TCTCGACGCCAGATTTAATATTAATTCCCGCA 105752 29 100.0 32 ............................. CAGACGTAGAGATTGAGAACACAAATGACTCA 105691 29 100.0 32 ............................. GATTGCTCAGATTGGGAATTTGACCAGCGACC 105630 29 96.6 32 ........................G.... ACTATTTTTCAGGTGAATTACAGCGCCGCAAC 105569 29 100.0 33 ............................. GCGAAAAATTGACGCTATCAGGGAGAGCGCCGG 105507 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 105446 29 100.0 32 ............................. GCCGTGAACGCGTCGCCCGCTTTTTTGTAGCA 105385 29 96.6 0 ............T................ | A [105358] ========== ====== ====== ====== ============================= ================================= ================== 49 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCCTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGTGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTTTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125949-124576 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXCP010000007.1 Salmonella enterica strain LB1 contig00007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125948 29 100.0 32 ............................. ATTAAATTTTCGGGAACGGCGACGGAATCCGG 125887 29 100.0 32 ............................. AAAATCATCATGGCCAGCGCTGGCGCGCTCGC 125826 29 100.0 32 ............................. AATGATTATATCGATCGACCAATCGATGAGCA 125765 29 100.0 32 ............................. TCGGTGAGACAAATCATTCCAGATTGATCAAC 125704 29 100.0 32 ............................. AATTTAAACAGTAATTTAAAATTGTTAGCGTC 125643 29 100.0 33 ............................. GCAACGGCGGCGCGGCATTCTGCGGTGCAAATA 125581 29 100.0 32 ............................. GATTCCAGCGCGCCAAAATCAGGAGATTCCGT 125520 29 100.0 32 ............................. CCCCCGGCATTCGGCTATGCCTATTCATATGT 125459 29 100.0 32 ............................. TGGTCACTACCGTCTATCTCTTCCGGATACAC 125398 29 100.0 32 ............................. AACCCGGCAGCAGGGGTAATTCATACAGCATA 125337 29 100.0 32 ............................. ATTTGGTGAAGGGCGCATTTGAGGACCCGTTA 125276 29 96.6 32 ............T................ CTTGCAGCCGAATACGGTATAGAGTGGGACGG 125215 29 100.0 33 ............................. GCCTGTCCTGCGTCAGCGTTACCAGCTTCATGC 125153 29 100.0 32 ............................. AAATTCAATTACGACTCGCTGCCTGACGGGGT 125092 29 100.0 32 ............................. ATTTTGAGCGGACGGGAGCTGGCCGAATGACC 125031 29 100.0 33 ............................. CGGTTTTTACTTTTGCTGCATTCCGCCTCCCGG 124969 29 100.0 32 ............................. TCCTGGCAGGAATACAAACTTGTGATGCTGCG 124908 29 96.6 32 .............T............... ACCGCAGGCGCAGCGGCAATATTCTGGTTCAA 124847 29 96.6 32 .............T............... TCGTTTCTGGGAGCGGGTCTTTCCAGTATTGC 124786 29 96.6 32 ...........C................. CAGGGGAAGAGGTTCCGGCCCAGCAGTTCTAT 124725 29 100.0 32 ............................. CTGCTGGGTCGTGTTTGACTCAACGCTCCCCA 124664 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 124603 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCACTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //