Array 1 4753440-4748730 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033575.1 Shewanella algae strain KC-Na-R1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4753439 28 96.4 32 ....C....................... TAAAATTACTGTTTTGACTGCTTGTCGACATA 4753379 28 96.4 32 ....C....................... TTTGGAGGATGGTCAGCCTCCTTATGCTCCCG 4753319 28 96.4 32 ....C....................... AACCAGAGAATAAGACTTCAAATAGCTAACAA 4753259 28 96.4 32 ....C....................... GTTTCTATTGTTGGGCACCACTTGGGGCTTTT 4753199 28 96.4 32 ....C....................... AGGCGCTGCCTATGCAAGGCGTGCAGGATTTC 4753139 28 96.4 32 ....C....................... GCTTGGTTCAGTGGTCGCTGAGCCAACAAAGC 4753079 28 96.4 32 ....C....................... GCATCGATGAGCCAGCCAGACTCAACACCAAA 4753019 28 96.4 32 ....C....................... TTGAACGCCATGTTGATACCGATTACCAAAAC 4752959 28 96.4 32 ....C....................... GGTTAGGGAGGGACCCGCGTCAGCGGGAGGGT 4752899 28 96.4 32 ....C....................... GGATATATCCCCAGAATATTTAACACCATAAT 4752839 28 96.4 32 ....C....................... TTGAGCGCCCAGCGTCTTGAGTGCTGACCCCA 4752779 28 96.4 32 ....C....................... GCCAGAATCAGTACACTGTTCGTCAGCATACT 4752719 28 96.4 32 ....C....................... TATGTAGCAGTAGAAACAGTCCGACGAACCGT 4752659 28 96.4 32 ....C....................... TCCTTGTTGGTTAACCCACAACTATTCGTTGC 4752599 28 96.4 32 ....C....................... TGGTAAAGCCTTATTGATATCAAAACGTTCTA 4752539 28 96.4 32 ....C....................... AAAATGGCAAGCACGTTGCAAACACTGGATGG 4752479 28 92.9 32 ....C.......T............... GGATAACCTGAGTGTTGGCGGCCACCTCGACC 4752419 28 92.9 32 ....C.......T............... TGAGTGTTGGCGGCTCCCTCGACCTCCAAGGC 4752359 28 92.9 32 ....C.......T............... TCGATGCGTTCTGCTTCAATGCGGCGGTTAAC 4752299 28 92.9 32 ....C.......T............... GTGTTGAGTGGCACAGGGTTGTTATCTTTGGA 4752239 28 92.9 32 ....C.......T............... GATTTCGGCATGTTGGTTTAGCAGGTTGTTGA 4752179 28 92.9 32 ....C.......T............... AATAAGATGCTCGAACACAGCGCCAAGCTAGT 4752119 28 92.9 32 ....C.......T............... AGAGTGTAATATGCAGTCCAGGACTTTTCCTG 4752059 28 92.9 32 ....C.......T............... TATCGAAGCACTAAAGCCCAAGCAAAAACGCT 4751999 28 100.0 32 ............................ TATCGAAGCACTAAAGCCCAAGCAAAAACGCT 4751939 28 96.4 32 ............T............... ATTATGGCGCAGCCTGCTATCCAGGGTGCATC 4751879 28 92.9 32 ....C.......T............... ATTGGATTGGAGCTTTCTAATAGCATGATTGA 4751819 28 92.9 32 ....C.......T............... AGTTTGGGACGCTGATATTGGTTCCGGGTATC 4751759 28 100.0 32 ............................ TCGGCTACCCAGATGTAATCAAGTTTGTCGTC 4751699 28 100.0 32 ............................ CTTATTGATTGCGTCATGCAGCAATTCGATGT 4751639 28 100.0 32 ............................ AGGGCGAAATCAAGGGCAACCGCTACAACATC 4751579 28 100.0 32 ............................ GCCTAGACCGTCTGATTATCAAGATGATGAAC 4751519 28 100.0 32 ............................ TGATCTGCCAGTTCCTTCTGGGTTAAGTTCGC 4751459 28 100.0 32 ............................ GCATCGAGAGTGCGGGCGCTGGCGCTACGCTT 4751399 28 100.0 32 ............................ AAAAAGCGCATACCAAGTTGGCATGTATGTGT 4751339 28 100.0 32 ............................ AAACCGATATGAATCCGCGGCGGCCTGATATC 4751279 28 100.0 32 ............................ TTGAACGTGCGGGTTCTGCTTCAACTAAGCGC 4751219 28 100.0 32 ............................ ACTTCGGAAAATGAGATTACCTGCGTTGGCTC 4751159 28 100.0 32 ............................ AATTCAACCGACCCGCTCAGGCGGGTTTCTTT 4751099 28 100.0 32 ............................ AGAACAGGACTTGGCAAAGCCGTAATAAATCG 4751039 28 100.0 33 ............................ CAACCAAGGCACCCAAAACCACGGCTTTTCATC 4750978 28 100.0 32 ............................ AAGCGGACAAGTAGGAAACTTTGGATAACAAA 4750918 28 100.0 32 ............................ ATTCTGCTATCTCTTTTTCTGCATCAAGGGAC 4750858 28 100.0 32 ............................ ACGCAGTGTGATCATCCATGCTGGCAACGGCA 4750798 28 100.0 32 ............................ TATAGTCACTAGCAATAAGTGTACCATAGAGG 4750738 28 100.0 32 ............................ TTGCTAACCACCCAATAACACCCTCTAACCTT 4750678 28 100.0 32 ............................ TCACTGACAGGGGTGTTAAACAATAGTTTTGT 4750618 28 100.0 33 ............................ ACAACTGGGCCGGTCACCTCAAGGTCGAATCGG 4750557 28 100.0 32 ............................ GCGATGGATGTACTGAAATGGCGAATCTCCGC 4750497 28 100.0 32 ............................ TAAGCCGCGCGTTTGAAGACAAAGAGCCACAG 4750437 28 100.0 32 ............................ AATACGTACATCGTGGAGAGGTGCTGCTTGGG 4750377 28 100.0 32 ............................ CCTCGTTTGTGGTATCATTGGCGATAGTAGTT 4750317 28 100.0 32 ............................ CGTTTACCGGAGTACACTGAGCGGGTACAGTC 4750257 28 100.0 32 ............................ TTCCCTAAGCGCAGGCAGTAATTCAAACCAGA 4750197 28 100.0 32 ............................ CTGGTCGGTGACATTCAACGGGCTAAAGGTCC 4750137 28 100.0 32 ............................ TGCACCCATGAAAGGTCTATGATGATATCACC 4750077 28 100.0 32 ............................ TGTAGGGTGCCTTGATGATGTTCGGGCACTGA 4750017 28 100.0 32 ............................ AGCTCGAAGTGTCTGAGTGGGAGCAGAATCCT 4749957 28 100.0 32 ............................ TGCAAAGAAATAAACTCTTGGGAAACAAAAGT 4749897 28 100.0 32 ............................ TCACTGACAATCCATCGTGCCAAGGCTCCTCT 4749837 28 100.0 32 ............................ TAAAGTGGTTCGCCGCAGAAAGGCGAGCGAAG 4749777 28 100.0 32 ............................ TTTCTGGCCTCTCGACTAATAACTTCGTCAAT 4749717 28 100.0 32 ............................ AGAATGAGGCGTCAATGCCTGAGTTAATGAAG 4749657 28 100.0 32 ............................ TTGAAACCATAGAGAGTATTTTGGGTGAGAAA 4749597 28 100.0 32 ............................ ATACCGGGTAAGTCGCCATTGATGCGTTGCAG 4749537 28 100.0 32 ............................ AACAGACAGTACAGTCAGGCTGCAAGCCTAGC 4749477 28 100.0 32 ............................ AAAGATCAATACCGATGACCTCAGGAGTTTTG 4749417 28 100.0 32 ............................ CAGGATTCCAAAAGCAATGTTGAGAAATTTGG 4749357 28 100.0 32 ............................ CCTTTCGTCAGCTCGGCATTGAACTGTTCAAT 4749297 28 100.0 32 ............................ AGTCAAGAAAGGAGCTCAGGGTGAAAGCTGAA 4749237 28 100.0 32 ............................ TGTAGTGTGGCAATACTTGGCTTCCCCTGAGA 4749177 28 100.0 32 ............................ CGAGGGGGTTAAAGGTATGGTGTCATCTTGCT 4749117 28 100.0 32 ............................ AACTGAGGCCGTCAAACATCGTGGACATAGCT 4749057 28 100.0 32 ............................ TCATGTGGACGATGATGACCCCATGGGTGAGG 4748997 28 100.0 32 ............................ AGTAGGGCATTTTGGTGAGTGTGTCGGCGATA 4748937 28 100.0 32 ............................ TATCGGGCGGAATTGGCGTTAACTCTTCAATG 4748877 28 100.0 32 ............................ TATCGAAGCACTAAAGCCCAAGCAAAAACGCT 4748817 28 100.0 32 ............................ AAGTATTTAAACGGCACTTGGGCAATATAAAA 4748757 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 79 28 98.3 32 GTTCACTGCCGCCCAGGCAGCTTAGAAA # Left flank : CGAGTGATGTTTCCTACGTGAGCTTTGTACGCAAACAGGTGAAATCGCCTGAGCGGATTGAGCGGGCTATGCAGCAAAAGGCGGCATTATGGGCGGCAAAGTCGGGCAAGCCGCTGGCCGAGTGCTTAACCGATCTTGAAAAAAGCAAACCGACTGGGCAGTGTGATTTGCCATTTATCTTCTTGCACAGCCAGCAAACGAAACAACGTTCGCCGGACAAAAACAGCAAGTTCCCGCTGTTTATCGAAAGATATCCGCAAAGTACACCTGTGGATGGGCAGTTCGATTGCTACGGGCTGAGTCGTAAAGTTAATGGTATTGCATCGTTTGGAACAGTACCGCACTTTTAAGCATCAAAGGGTGAGTTTTACCCTTTATTTTTGCTCTTTAAAAATAAGCTTTATATACAATCAGTTACAACAGGTGGTATTCAACAGGGTAAAAATAGGTTTTTTATCCTAACCACCTGTTGTGACTTTCTTTTATTGCTTTATTCTATT # Right flank : GTTCTTCTGGTGAATTACCCTTGAGCCTTGCCGTGCTCCCTCCACAACGGGGATTTATCACTCGGCCCCAGCAAAATCCGAACGTCTTGCATTTGTGGGGCTGAAGAGGCCGAAACTGAGGAGATCTAAATAGCGGCCCGGCTCAAGGCAGCATATCTACTCGAAGTAGTCTGCTGGCGCTGCGGCCTTTGTCGTCGCTGACCGATAACTGGAAGCGTCCGGCTCTGGGTGGGCGCCATTCCAGGGTTTGTCCCGGCAGGCTCTGGCCGAGCAGGCTGTTACCGGCAAACCAGTAGAGTATTTGGCTGTCGGAGGCGGCGTCGGCCTTGAGGGCGATGTGTTCATTGGCCACGCTTTGGCGCAGGCTGTAGGTGACGCCCTTCAAGGGAGAGCGGATAAGCGGGGCAGCGTAGCTAACCGCGACTCTTTGGCTGCAGGCGGCCGGAAGCTCCGGCGGCCTCCTGCGGGGTAAACCTGCCTGCTCGAACAGGGCCGCCAAG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCCCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCCCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //