Array 1 2549-202 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDTZ01000007.1 Bifidobacterium pseudolongum subsp. pseudolongum DSM 20099 contig7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2548 29 100.0 32 ............................. GCTCCAATATAATGGCTCCATTGTCCCACCTT 2487 29 100.0 32 ............................. TGGAGCGGCCTGCCGAACGGCATCGATGCACG 2426 29 100.0 32 ............................. GAGCCCAACCATGCGTAACATCAAGCATCTAA 2365 29 100.0 32 ............................. CGCTACATGGATTTGGGCAAGACCATAATCCA 2304 29 100.0 32 ............................. TCCACTGCACCGTCAGCCGCGAAACCGATGAC 2243 29 100.0 32 ............................. CCGCCGCCACCGACATTCACCTGCGACGGCAA 2182 29 100.0 32 ............................. GCGTAGGCAACGTAAGTACAATGCGGCGAAAA 2121 29 100.0 32 ............................. AGGCTATCGAATTCACGAACGGCAGCCGCATC 2060 29 100.0 32 ............................. TGCGGTCGCGAGGAACACCGGCTCGACGGCGT 1999 29 100.0 32 ............................. GAGCAGTGAATGGTCGTCATACGAGAGGACAT 1938 29 100.0 32 ............................. CCCATACCCTGGTAACCACAGCAGGACACGGC 1877 29 96.6 32 ............................C CGCGCAATGGGCCAGTGGCATATGGAACCCGC 1816 29 100.0 32 ............................. AAGTAGCCAAACTTGGCGGAAACATGCAGGTG 1755 29 100.0 32 ............................. AACGCGCATGGCATGGAACGAGACGGTGGAGT 1694 29 100.0 32 ............................. AAATCTTTATGATGCAAGTCGCCACGCAGAAC 1633 29 100.0 32 ............................. CAAGCGACCCGCGAAAAAACGACGCTGTGGGA 1572 29 100.0 32 ............................. ACCGGCAAGACCGCGCAGGCGCGCGCCACCGC 1511 29 100.0 32 ............................. GCATTGTACAGCTTGGCTTTTCCCGCCGCCGT 1450 29 100.0 32 ............................. ACGGCTGACCCCGACGGGTGGTCGCGGTTCGC 1389 29 96.6 32 ..........T.................. CGGCATGGCGAACGTGCTACGATACACCCTCA 1328 29 96.6 32 ............................A TATGCGACGAACGCGAGCCAGACCGATAGCGT 1267 29 100.0 32 ............................. CGCAGCAGACATTGTGGGAATCAGACTGCAAG 1206 29 100.0 32 ............................. AAAACCATCACCCCCAAGCAGGCGCTCGCCGA 1145 29 96.6 32 ............................A GCGCGCCGCCCGATTTTGGTCAGACTGGCGGA 1084 29 100.0 32 ............................. AAAACCATCACCCCCAAGCAGGCGCTCGCCGA 1023 29 96.6 32 ............................A GCGCGCCGCCCGATTTTGGTCAGACTGGCGAG 962 29 100.0 32 ............................. GATCCACCGGCACACAGGCGCACAGCGTGCAC 901 29 100.0 32 ............................. TTGCCGCAGGCGGTCGCTTGGCACATGCCGCA 840 29 96.6 32 ..........T.................. GTGGAATGCTTCATCAATTCCGCGAACGGATA 779 29 96.6 32 ........T.................... TTTGCGGGCGCGCTGCACATACTTCTCGATGC 718 29 100.0 32 ............................. TATGGGGAGGAAAATATCATTCCTGAAAACGT 657 29 100.0 32 ............................. GTGAGGGTCATTGACGCCGACCATGATCTGAC 596 29 100.0 32 ............................. TCGAGGCTGCGGCAGAAGGTGAAACGCTGCCG 535 29 100.0 32 ............................. ATTCCACTTCACCTGCCGGCGGATGACATTCA 474 29 96.6 32 ............................T TCGAGAATCCTACGCCGATCGGCATCGTCCAT 413 29 100.0 32 ............................. ATGCCAATATGATTCAACCGTCGGTGAGCGGC 352 29 100.0 32 ............................. GACGCCGAGGACCACTTCAAGGCGTATACGGA 291 29 96.6 32 ............................A TTCACGCGCGTAGCGAGCTGCGTAAGCGCGGA 230 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 39 29 99.2 32 GTTTGCCCCGCATGTGCGGGGATGATCCG # Left flank : AACGTCATAGGGTTTGCCCCGCATGTGCGGGGATGATCCGGCCCTACAACGAGTCTTACAACTCAACAACAGGGCAGTCAAGAAACACGCGAAAAGCACCATAAAGAAACGGACATAACAATGCACACGCCAATAGACCCACCAATGAAATGCAGGGAATACTACCCGCCAGTCGACAAAGAAATCGCCTCACTGCCGACGTGCGAACCCGGCGAAAAACCGGAGCCACTTCTAATCCCTGAATACCTGTTCGACACCGACGACGAGCAGACAGAACCACAGCCGGACAACACGGAACACGAGCCATACACAGACCACGACCCAAAAGCGGACAGCCATGACCAATGAACAGGCCCTCGACCGCATCGCCCACAGCCTCGAACAAATCACCGACATACTCAACGGAACAGCACCACTCGAAATAACACGCGAACACGCACTCGACGCATGGGGCATGCGCATATACGAGGACGAATACCTGCACGCGCTCGAAACACTCG # Right flank : GTAGAGGTTGTCGCCGCTTAATTGTATCCACCTGTTTGCCCCGCGCCGTTGTCGCCGTTGTCTAAATGAAAGTGCAACACTGTTGTCAGGCTTGTAAGTGTAGCAGTTCGTCAATGAAGGCTTCGGCTGGTCCGGGTCAAAATGCACCTACCACTCTTATCGTCTGTTACCGCCTTCTGGGATGGCAGCAGTTTCTGTTTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCATGTGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTGCCCCGCATGCGCGGGGATGATCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 6027-3009 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDTZ01000007.1 Bifidobacterium pseudolongum subsp. pseudolongum DSM 20099 contig7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6026 29 100.0 32 ............................. GATTGTTGCCATGTCTGAACCACCCAAGCCTT 5965 29 100.0 32 ............................. CATTATCGCCTGTTGTATGAAATGCGCGGCCT 5904 29 100.0 32 ............................. AATCCCGGAAGTTTTCGTTGATCGTTGTTTTC 5843 29 100.0 32 ............................. GATTGTTGCCATGTCTGAACCACCCAAGCCTT 5782 29 100.0 32 ............................. CATTATCGCCTGTTGTATGAAATGCGCGGCCC 5721 29 100.0 32 ............................. CCTACCTAGCTTGCGAACCTTTAGAGACCCAA 5660 29 100.0 32 ............................. TGCAGTATCCACTCATTGCCCTTGTGGTGGCG 5599 29 100.0 32 ............................. CCGTAACGCCTCATAAGAGAGTCGATACGCTG 5538 29 100.0 32 ............................. GCACGCGCGTCGCAATCAGCGGGCAGGACGGT 5477 29 100.0 32 ............................. TCCTTGTACTGCTCCGGTTCGAGGTCCGGCTT 5416 29 100.0 32 ............................. CACGATAAACGCGCGCAGGGAATCCTCACCAT 5355 29 100.0 32 ............................. GCGAGCGACCCGCGAAAAAACGACGCTGTGGG 5294 29 100.0 32 ............................. TTTCGCGTCATGGGCGTTCCCGCCCACTGTTT 5233 29 100.0 32 ............................. TGGCCGGGGGCGCATGAACCCTACTCCCGCAA 5172 29 100.0 32 ............................. CAGAACAACGAGTGGGTGCTGAACATCAAGGG 5111 29 100.0 32 ............................. CGGGCCACCAACAGGTGAACCCGCTCCACAAC 5050 29 100.0 32 ............................. TCCACCCAATTCCACCCGTCCTGGAACGCTTG 4989 29 100.0 32 ............................. GGACGCCACCCTCCAACTCGCCGCCCCAACGG 4928 29 100.0 32 ............................. GCGACGGTGGCTTCGACATTCCATCCGGAGCC 4867 29 100.0 32 ............................. CTTACGAGTGCCATGATTCCGTCTCCTTGCTA 4806 29 100.0 32 ............................. CTTACGAGTGCCATGATTCCGTCTCCTTGCTA 4745 29 96.6 32 ............................T GCGGACATGCGGATTATAGACACGGCGCTGGG 4684 29 96.6 32 ............................T GCGGACATGCGGATTATAGACACGGCGCTGGG 4623 29 100.0 32 ............................. GCCAGTGGCGTCCGCGAGGGGCGCGCCCACGG 4562 29 96.6 32 ............................T GCGGCGTTGCTCAAAACACATGCGCAGGCGGT 4501 29 100.0 32 ............................. CCACCCGAAACCTACTGGATGGGCGAACCGAA 4440 29 100.0 32 ............................. CGGCACGTCCTCACCCGCGGCTTCATTCGCTC 4379 29 100.0 32 ............................. CGGAGATCTGGATGCGGGAAGCACAGGACATC 4318 29 100.0 32 ............................. TCTGATGCAGACGATCCCGCCGACGTTCGCCG 4257 29 100.0 32 ............................. GACTTGAAACCTCCACCGGTGTCGTTGAGCGT 4196 29 100.0 32 ............................. CGTTGAGCAAGGTCGAGAAGCTCGAGGGCAGT 4135 29 100.0 32 ............................. TTGAGGCAGTTGCGGGTATTCCACCGGCACGT 4074 29 100.0 32 ............................. TGTCTGGCCGGTTCGTAAAAGTGGTCATATTG 4013 29 100.0 32 ............................. CGCAAGCGCACATCAGCCAATGGCATGAGCAC 3952 29 100.0 32 ............................. CGCAGTGAGATTTACGCCGAACTCCACGGCGT 3891 29 100.0 32 ............................. AAGCGGTATCCCTTGCGGGATTTCTCCTCTGT 3830 29 100.0 32 ............................. TCGCATAGTCGGTTGTACAGGTAGGACACGTA 3769 29 100.0 32 ............................. GATTGATCGTCCACGTCACAGCAGGATTCATC 3708 29 100.0 32 ............................. CTGAACGGGTGGATCATCGTTGATGACGCCAA 3647 29 100.0 32 ............................. TTCACCAGTGGAGGTCTCGTCGCCTACAACGC 3586 29 100.0 32 ............................. CTGAACGGGTGGATCATCGTTGATGACGCCAA 3525 29 100.0 32 ............................. TTCACCAGTGGAGGTCTCGTCGCCTACAACGC 3464 29 100.0 32 ............................. ACAAGGGCGTTGGCGATTTGGGTTTGTCGGGT 3403 29 96.6 32 .....T....................... CGCACCGGCATTCCGAACTTGCTCATGGTGCA 3342 29 100.0 32 ............................. CCCTTCGCGGACGTGATTCGTGTCGATGCCGA 3281 29 100.0 32 ............................. AGCGACGCATACGCGCGCGCCCAGCTCGAGCA 3220 29 100.0 32 ............................. CCCTTCGCGGACGTGATTCGTGTCGATGCCGA 3159 29 100.0 32 ............................. AGCGACGCATACGCGCGCGCCCAGCTCGAGCA 3098 29 100.0 32 ............................. GACGTACTGACGAAAATCAGCAACGTCATAGG 3037 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 50 29 99.7 32 GTTTGCCCCGCATGTGCGGGGATGATCCG # Left flank : CCACGGGCGT # Right flank : GCCCTACAACGAGTCTTACAACTCAACAACAGGGCAGTCAAGAAACACGCGAAAAGCACCATAAAGAAACGGACATAACAATGCACACGCCAATAGACCCACCAATGAAATGCAGGGAATACTACCCGCCAGTCGACAAAGAAATCGCCTCACTGCCGACGTGCGAACCCGGCGAAAAACCGGAGCCACTTCTAATCCCTGAATACCTGTTCGACACCGACGACGAGCAGACAGAACCACAGCCGGACAACACGGAACACGAGCCATACACAGACCACGACCCAAAAGCGGACAGCCATGACCAATGAACAGGCCCTCGACCGCATCGCCCACAGCCTCGAACAAATCACCGACATACTCAACGGAACAGCACCACTCGAAATAACACGCGAACACGCACTCGACGCATGGGGCATGCGCATATACGAGGACGAATACCTGCACGCGCTCGAAACACTCGGTTTGCCCCGCATGTGCGGGGATGATCCGGCTCCAATATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCATGTGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTGCCCCGCATGCGCGGGGATGATCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1767-30 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDTZ01000008.1 Bifidobacterium pseudolongum subsp. pseudolongum DSM 20099 contig8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1766 29 96.6 32 ............................A AGTGTCACACTTATATGCAGTGGGAGTAGTGG 1705 29 100.0 32 ............................. GCTCAGCGTGAAAAAATCGCTACCGTTATGGG 1644 29 100.0 32 ............................. TTCGCAGACATGTGGGATAATGCTGACGGCAT 1583 29 100.0 32 ............................. ATATTTTGCACGGTCAGTTTCTGTGTCTCGCT 1522 29 96.6 32 ............................T TATGCAAGTCACTGTCACCGCAAAAACACGTA 1461 29 100.0 32 ............................. AAGTGGCCCTTGCCGGGGATCTCGAGGAAGCG 1400 29 100.0 32 ............................. GCGCTGTTCACGCGCGACGTGACCGGCGACGC 1339 29 100.0 32 ............................. GGGCCGTCAACACTCCCAGCACCCTACCCCCG 1278 29 100.0 32 ............................. GCGAAACGTGACATCGTAGTGACAGGAAGCAA 1217 29 100.0 32 ............................. GAGGCCGCCGCGAGCACGGCGACGATGGAGGG 1156 29 100.0 32 ............................. TCGGTTGGAACCTCCTCAAGGACGCGTTCGGC 1095 29 100.0 32 ............................. CAGGGAAGTGATGATGGCAGAGCGAACCACAA 1034 29 100.0 32 ............................. GACACGAACATGACCACATACCAGAACGGGCC 973 29 100.0 32 ............................. TGCAGGCGGGCAATGAAAAAACAAACGTGTTC 912 29 100.0 32 ............................. GCGCTCTAATTCCAATAATGCGTTATTGAATG 851 29 100.0 32 ............................. ACGACCAAGCCAGCAGCATGTGCGACGACACG 790 29 100.0 32 ............................. GCCGACGAGATCCTCGGAGCAGCCAAGGAAGA 729 29 100.0 32 ............................. CGCGGACACGTTGCGCGTAAAGGCACGCGCCA 668 29 100.0 32 ............................. TTGTTCCTTGTTGGATATTTTTAGTATAGCAG 607 29 100.0 32 ............................. CCTAAGCGTAAAGCGGTCAATAATAATAACAA 546 29 100.0 32 ............................. GCCGTCGAACACGGTATGCCCGTAGTCAATAT 485 29 100.0 32 ............................. GCGCAGGATGCGGCCGCGTGGCTCAAGGACCT 424 29 100.0 32 ............................. ATCCTCTACTCGGCGCGCACTGTCACCATTGA 363 29 100.0 32 ............................. GCATTGAAATTAGCAAATGGACCAGCAACTGT 302 29 100.0 32 ............................. TCCTCGATGGTGGGCGCCATCAGACCCAAGGC 241 29 100.0 32 ............................. GATCTCGTCGGCCTTCGCGTCGAGTTCCTCTT 180 29 100.0 32 ............................. TCCTCGAAGTCCACGCCGGCGCCACGGGCGGC 119 29 96.6 32 ............................A ATCTCATGTGTATGAGCAATTTTACGTACTGG 58 29 96.6 0 .......................A..... | ========== ====== ====== ====== ============================= ================================ ================== 29 29 99.5 32 GTTTGCCCCGCATGTGCGGGGATGATCCG # Left flank : GATTGTCATCGTGCTGACGGCTGCGCCTCCCAAGATACGAGGTCATCTCACACGATGGTTGTTTGAGATATCTCCAGGTGTGTATGTGGGAAAAGTATCAGCCTGTGTTAGAGAGTTGATTTGGGAGCAAATTCTTGACAATATCCGAGATGGGCGCGCCGTAATGGTGTATTCGGAGAATAATGAACAGGGACTGGAGTTCAAAACCTACGGACAGGAGTGGTCGCCTGTTGATTTTGAGGGCCTTGAGCTGATTATGAGGCCTCATGATCAAGGCGAATCCAGCGGGAGATCTCAGGGCGCATCTCGTAGAAAAGGTTGGAGCAATGCATCGCGATATCGTCGTTTTGGTAGATAGTTGTTGCTGCGATGTTAAACTGGGGATTGCGTGCCGACGTGAGGAAGTTTGGAACCATGATGACGTTAGCGAAATGTGACCGACTGTGCAAATCGAATTTTTCGAGTATTGTCGGAGTGCGTTTTGCTAATGGAATCAGACT # Right flank : GATGCATGAGGTGGTCACTGGGTGTGTGTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCATGTGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTGCCCCGCATGCGCGGGGATGATCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: R [21.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //