Array 1 5257-3959 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMRT01000013.1 Streptomyces abikoensis strain JCM 4002 sequence13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 5256 29 100.0 32 ............................. TACGCGCCGACGCAGCACCTTGAGCAGGTGCC 5195 29 100.0 32 ............................. GGCCCGGGTGTGGCCGTGGCGGCCACTTTGTG 5134 29 100.0 32 ............................. GGCGGCATATGGTGTCGCAGTAGGCGGGGCTG 5073 29 93.1 33 ........................GT... CGCGGCAACGCCGAGCAGCTCCGCCACTGGTAC 5011 28 79.3 32 ...C.......A.G......-...GT... AACGAGTGGCTCGACGACATGATGGACGAGCT 4951 29 89.7 32 ...C....................GT... GGTGCGGCCGGTGTCACGCCGGCGCGATTGCG 4890 29 82.8 32 ...C.........GG.........GT... GCCAAAGCCCGCGCGAAGGTCATCGACGCCGC 4829 29 89.7 32 ...C....................GT... GGGCCCGGCGACTCCCAGCTGCAGTCCGGCGT 4768 29 82.8 32 ...C..T......T..........GT... GGCTGGCGCAAGCTCATGTCCGGCCGGGCCTG 4707 29 100.0 32 ............................. TCCTGACGGTCTCGTCGCGTGGGCGGTGCGTT 4646 29 89.7 32 ...C......T.....T............ CGTCAGCGCGGCCAGCAGCGGCGGCCGCACCG 4585 29 93.1 26 ...C........T................ GTCCCGGCCGACCACCGGCTACGGAT 4530 29 93.1 32 ...C....................G.... CCGTTCCACGTGAACCGCGCGGACCGGTCGTG 4469 29 89.7 32 ...C..T.................G.... TACGACGCGGCCACCGGCAGCCTCATCAGCAT 4408 29 79.3 32 ...C......T.TGT.........G.... GTGCTCGGCACCGTCCGGGCGGTGGCGGTGAT 4347 29 86.2 32 .............GT.........GT... GACGGCTCGATTGCTCAGTACATCGGCACGGA 4286 29 86.2 32 ...C.......A.G..........G.... AGCAACGCGAGGGGAGACAGACATGCGCGGTG 4225 29 79.3 32 ...C.......A.GT.........G...G AAGGACCCTCGCGACGAGCGGTTCGAGCGGCG 4164 29 96.6 33 ...C......................... TTCAACCGGTCCATCACGAAGAAGACCTTCATC 4102 29 86.2 42 ...C......T...T..........C... CCCCCGCACTTCCGCACCGCGCACCGTGCACGCCGACGGCAT 4031 29 72.4 15 ...C..T...T.TGT..........C..A GCCGACGTGGCGAGG Deletion [3988] 3987 29 93.1 0 ....G...................G.... | ========== ====== ====== ====== ============================= ========================================== ================== 22 29 89.2 32 CTGTTCCCCGCGCACGCGGGGATGAACCC # Left flank : CCTCGCGGACGATCAGTGGTCTGGGGCGGCAACTTCTAGCGATCACGCGGACTCCTCGGACAGGCCTTTTAGGCCTCGTTTTGGGCAACATGTGCCCGGTCCCCCGGTCTCGTCTGCCGGTGTCCGCTACCGTGCTGCCCGGCCAGACGCGTACTGCCGTTCACCGCTGCCGCCAGCTCCACGCGCGCCCGGCGGCGGCAGTCGTAGCGCTGGCTCGGGGGCGTGACCCGGTCGGCAGGGGGAAGTCCTCGGACGCGATGTCGGCGGGTCTGCCGGCCAGGGCGCTTCCTGCGTCGCGGGGGAGCCGTCCTCTCGGCGTCCCGGCGGCTTCGTGACGGGCATCGGTCTGCAAGTGGTCGGGTCTGCGATGCTGGTTGAGCCATGCCGCCACCTGCCAGCTCTTCAGTGAACAAGCAGAGGTTTAAATGTTCTGTATGTCGGAGTCGGTGAAAGTGCTCAGAAATAGCTTCGCCTGGTCGTAAAGGTGCAGGTCGCGGAGT # Right flank : CGGATCACCTACGGCTCCGGCTCGTAGATCTCCTGCTCCCCGCGCGCGTGCCTGGTTGACTGGTCTGCCGGTCGCTGCTCCCCGCAGTCGTGTGCGTGGGTGTGATCCCGCCGTCACTGGCTGCGTCGAGGTCCGGGGTCTTTGCTTCCCGTGTCCTGGGGGGATGGGCCTGGGGCCGGGTTCGGTCGCGGGTTGGTTTCTGCTTCGTGGAGGGCTTCGGTCCGGGTGGGGAGGGGGCGTGGTGGGTTGTTTGGGTGGGTCGGGGCCCGAAAGGTTGACAGGATGATCCTGTCATGGTGGCATGGGGGTGTGTTGTACGAGACTCCGGCGCTGGACGCCGATGATCACCGTGTGCTCGAGGAGATCGAGCGGATGCGGATGCGGCTGCGGCATCAGTTGCGGGCGCAGCCTCGCTGGTCCGGGCAGTTGCGGCGTAACCTCACGGCTCGCGCGATCGCCGGTTCGAACACCATCGAGGGCTATGCCGCCACCGTCGATGA # Questionable array : NO Score: 4.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.46, 5:0, 6:0.25, 7:-0.07, 8:1, 9:0.26, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCACGCGGGGATGAACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCACGCGGGGATGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [20-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 14996-14198 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMRT01000013.1 Streptomyces abikoensis strain JCM 4002 sequence13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================================== ================== 14995 29 100.0 32 ............................. GTCTCGGCGAAGGCGACCATGGGGGCCGCCGG 14934 29 100.0 32 ............................. AGGCCGACCATGAGTTCCTGGCGGTGGCTGCC 14873 29 96.6 32 .........A................... AACGAGATCGGCTTCCCGACCACCGTCTCCCA 14812 28 93.1 29 ....................-...A.... GAGCGAGGTCATCATCTGCGAGCTCCACC 14755 29 69.0 31 GAAC.G.T.C......A........A... AGACCTACCCGGGCATCCTCGACCAGCTGAC 14695 29 89.7 32 ...C........T..........C..... GACGGCACCGCCTGGCGGGGCGTCTTCTACGG 14634 29 96.6 32 .........................A... GTGCTGCCGAGGGTCGGCGTCTCGATCGGCTT 14573 29 86.2 32 ...C.......A.G...........A... AGGGACGGCGATCTCTTTCACGGTCGGTGCCA 14512 29 96.6 32 ..........T.................. GAGCATCACGAGGCTGCGCCGGGGGAAGACCC 14451 29 86.2 32 ...C....G....GT.............. CTCATGGACTTCGAGGAGGCGGAGTCGGGCTA 14390 29 82.8 67 .A.C...T........T.........T.. CAGCTACAAGGCTGGCTTGTCCTCGGCGACTGCTCTTCCAGGTGACCGGTCGGTGGAACCCGGGGAA 14292 29 75.9 37 ........G.TATG..T...C........ CGGCGATTCGCACGTGATCGCCGGGCTATGCGATGTG 14226 29 69.0 0 ...C....T.T.T.....A..G....ATG | ========== ====== ====== ====== ============================= =================================================================== ================== 13 29 87.8 35 CTGTTCCCCGCGCACGCGGGGATGGTCCC # Left flank : ACGCGGGGATGACCCCGAGTTCGCCGAATTCATGAAGAGGTCCCTGCACTGCTCCCCGCGCACGCGGGGATGACCCCGTCGCCCGTGGCCTGAAACGGCGGTTGGCCAACTACTCCCCGCGCACGCGGGGATGGACCCCTCGCCCTGGGCATGGCCGAGGCTCCTAAGGTCTGTTCCCGCGCACGCGGGGATGGTCCTACGGGTGACCGTATCGGCCGTGCCCTGGAGAGCCTGGTCTCCGCGTACGTGGGGATGGCCTCGGACGGGTGGGCGGGATGGATGGCGCAGGTGTCAGCTGCTGTGGGTGTGTGGGGGCGTTGCCCCGGCGGCTGTCTTGCGAGTGTGGGTCGGCAAGTGGTGGGGTCTGCGATGCTGGGCCTGTCGTGCTGCCGTCCGTTGGCTCTCTATGGCAAGCGAGGGTGGAGATGTTCTGTATGTCTGAGTCGGTGGAAGTGCTCAAAAACGGCTTCGCCTGGTTGTAAAGGTGCAGGTCGCGGAGT # Right flank : CCGGCTGGTGTACGGGTCGCTAATTTCTGTGTGGGCAATTCTGGTCTGAAGGTGTTTATGTGTCTGTTTGGGAAGCGAACTCTCGTTAGGTCCAGCCGTCGAGTGAGACTTGAGGTCCGCCTGCCAGGTAGCGGCTGAGGGCGCTGGCTGTGGTGTCCACGAATTCTTCCGGGATGGCGCCGGTGTCGACCCAGCAGACTTGAGCGTGCTTGCGTGGTTCGCGGTTTTCGGGTTCGCCGGTCCACTTGTGGGCGACGAAGACGACGGTGATGAATCCGTTGGGCGCTTCGACGCCCCAGGCCCCATGGATGATGTGGGCGACTTTCAAAGACTCCGGCTTCACTGTCAGGCCGGTCTCTTCGTACAGCTCACGTACAGCCGTCTCGGTGATCGGTTCGCCGGGTTCGCTCTTGCCGACGGGGAGGTCCCACTTGCCCCTGGCGAATTTGGCCTGGTCGCTGCGCTGGAGGAGGACCACGCGGTTGGTGGCCTTGTCATGG # Questionable array : NO Score: 4.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.39, 5:0, 6:0.25, 7:-0.16, 8:1, 9:0.26, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [20-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 27960-26808 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMRT01000017.1 Streptomyces abikoensis strain JCM 4002 sequence17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================================================================================================= ================== 27959 30 83.3 119 ...........A.AC.T........T.... TGGTGAGTCGGCGGGATTCGAACCCGCTCATCTGTTCCCCGCGCGTGCAGGGTGCCGGACTGCTCGCGCGCGCGGGGATGGGGTCCCGTCGGTCTGCGCGGTCGCGACGACGAACAGTC 27810 30 76.7 31 ........T..ATAC..A.......T.... AAGCCCGCGGTGAGGCGTGGCTGCTGGTCTA 27749 30 100.0 31 .............................. CGCAGCTCCGCGCGGTGGCGTTGCACCATGT 27688 30 96.7 32 .............................C GCTCCTATGACGTCGGCGTTCTGGCCCATGAG 27626 30 86.7 32 .............AC.........A....T TGCGCAGGACCAGCAGCGCGGCGAGCAGGCCG 27564 29 83.3 31 ...........A..C.....-....G...C ATGCGGCTTACCCTGGCCGGTCTGGACGGCG 27504 30 86.7 31 .....G....TT.................A TGTGGCGCGTCGGCTGGAGCACCGTACTCGC 27443 30 100.0 31 .............................. CCCTTCGGGCCAGCTTCCGTGAGCATGTGCA 27382 30 90.0 31 ..........TT.................C GACGGAAGGCCGGCCGGCGGAGCGGTGCCCG 27321 30 86.7 31 .............AC.............AC CCCGAGCTATCGACGGCCGTACGGCCGGTCG 27260 30 93.3 31 ..........................T..A CCTGGTCCAGGGCGGGCTTGAGTTTGCCCTG 27199 30 90.0 31 .............AC..........T.... GGCAGGAGATCACCGGCCGCCTCCTCCGGCG C [27187] 27137 28 90.0 31 ............G..--............. GCACCGAGTACGAGTTGAAGTTCCCGAGCTG 27078 30 86.7 31 ...........C..C...A.....A..... CCCTCGTTGTATGGGGCTTCACGGACTTTGT 27017 30 90.0 31 .............A...........T...A GAGGCGACCTGTACGCCATCGTCACCGCCGT 26956 30 80.0 31 ..........T..TC.T........G...T GGGATCCGCGCGACGGTGAGGTGGATCTCCG 26895 28 80.0 29 ...G.........--......G..TC.... TTCTCGCGTCGCGGAGCCCGCTCTACCCG 26838 30 73.3 0 ...T.TT.............CTG...GG.. | A [26823] ========== ====== ====== ====== ============================== ======================================================================================================================= ================== 18 30 87.4 36 CTGCTCCCCGCGCGTGCGGGGATGGACCCG # Left flank : GCCGAGCCTCGCCACTACGGCTGCGCCATTATCTCTTCCTCCGACGTCAAGAAGCTCAGCGACAGCGATATCACCGCACCCGCCGCTGGGAGATTTCGTGTGCAGAAGTACCTGTCAGCGGCCGTTCCCTGGTCGTACGCCTTTGGCTTCCCGCCCTGGGACCCCAAGCGAGAGGGGGAGCGCTGGCACCCCAAACTGGACCGCGGTGACTGGGTCGACCGCGTCCACGGCACGCTCGAGGTGCTCACCCGGCGAGGTGGCGCCCGCGGGGCCCGGGACGCCTCAGGGCACCTCGGAGAGATCCCGATCGATCGGGATCAGCGGACCTTCGAGCTTCCGTCGTACGTCGAGGCGATGCGCAGGAGCACCCCGGGACGCTTTGAGCCGGCTTCTGAGGACGAGGCGCCTGCCGCGCCTCAGACGGTGATCGTTGAGCGGAAGCCGAAGCGGGCACGGAAGCGGAAGTAAAAGCGTTGCCGTCTACGACAAAAACTCTCCTG # Right flank : CGGTCCGTCCTGCTGGCGCGTGGCATCCTGGCCCGGTGTTCCTGAACGATCTGTCTAGCAGTGTCGGCCTTCGCCCGGTTCGTTATCAGTTTGCCTGTGTCCGGGGTGACTCGTACGACGACAACTGGCTGGTCGTTGATGGCGCGGTGATGACTCCTGAGGGCGGCTGGTCTTTCGCCGAGCCGTGTCTGCTCACTGATGAGGCCCGTCAGGTGTCCGGGTGGCTGCGCGCGGTGGCGGCGGGGACGGTGGCCGTCACCGAGCCCGATGCCGATGGTGAGCTGTCGCCGGGCATGTCGTTCATCGAGCCGGTCGTGGCTTTCAGCCTCGTCGGCCGGAGCGAGGGTGGGACGGCGGTGATTCGCGTTCATCTGTCCTTGGAGGCGGCTCCCCCGTGGCGCCAGGGTGACGACGGGGCCGACGTCTGCCAGTACGCCGTGGAGGTCAGGATGGACGCCGCGGCGCTGCTTCACGCGGCTGACCAGTGGGACCTCTCTCTG # Questionable array : NO Score: 3.32 # Score Detail : 1:0, 2:3, 3:0, 4:0.36, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.20, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [21-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 29973-29158 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMRT01000017.1 Streptomyces abikoensis strain JCM 4002 sequence17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================================================================================================================================================================================== ================== 29972 29 96.6 31 .........................T... ACATCATCCTCCACGAACTCGGGCACATCCT 29912 29 96.6 32 .........................C... CCGGATCATGGGCCGGTAGGTGACGGGGACTT 29851 29 82.8 207 ...........A.G...C.......C.T. GGACCGGTGGGCAGGGTGGGTGTCGCAGGTGTCAGCTGTTGCCTCCCAGAGGTCAGCCAGCAGCTTGGGTGCCTGCCATGCCGGGTTGGCTGTGCTGCTGCCTGTCGGCTCTTCAGGGTAAGCAGTGGGTGGATATGTTCTGTATGTCCAGTCGGTGAAAGTGCTTGAGAATGGCTCTGCCTCGCGTAAACCCCCAGGACGCGGAGT 29615 29 82.8 31 ...........A.G.......G...TT.. GACCACGAGGACCGGCCCCAAGGGCCGATCG 29554 29 96.6 32 ........................A.... ACAGAGGCATGCCTGCCGGGCTTTCCCGGAGG 29493 29 93.1 32 .....T....T.................. GGGATCCTGGCCAGGGGAGAGAAGACGCAGAC 29432 29 96.6 32 ............................T GCAGCCCGCCAGGGACGGCGCCACGCGGCGGA 29371 29 100.0 32 ............................. TCCCGCGTCAGGCCGTCGAGGTCCGCCAGCTG 29310 29 100.0 32 ............................. GGGGCGGCGATGAGGTTGGGCGCTTCCGCCCA 29249 29 89.7 33 ...........A.G..........A.... AAGGTCGTCCACTACAACACCGAGAAGGAAGGC 29187 29 82.8 0 .C........T..GT.............T | G [29166] ========== ====== ====== ====== ============================= =============================================================================================================================================================================================================== ================== 11 29 92.5 50 CTGCTCCCCGCGCACGCGGGGATGGACCC # Left flank : GGCCCCCGTCTCTGCGTGGCTGTGGCCGGCCGGGTCACGTTCCGCTGCACCCTCATCCAGACGGGCACCGAGTCGTGCCGTTTCCGCGTCACCGAAGCGGAACGGTGCAAACCCTGATGATCCCACCGGTCTTGCGGCCGTTGTCGGGGAGCGTTCAGGTTCCCCATCGGCTCCAGAGGGTTTGCTGCCACTCGTTGGTGTCGGGACCGGGACGGCTTACTGAGGGCAACGGGCCCGAAGTGGTCTCGATCAAGTGCACCAGCGACCACGCGACGCCGTAGCAGTCGTCCGGACCGAAGCAGCCGGCCAGTGCATGCGCCTCCTCCGTCGTGACAGGTGAGGGGATGGCTTCGAGCTGCTTCACTCTCCGCTCGATCTCCTCCTCGCCGGCATTCCGGTCAGGCAGAGGGCCATCAACGACGAACGACTGAACTTCGGGTCCCATCCGCGAATAATCAGCTGCCAAGCACGGCCGCATCAAGCGCGGAGACAACGAGGAG # Right flank : GTGCGCCGACTCGGCGTGCTCGCCGGCTGCAGCTGCTTCCCCGCTGCGTGGGACGGTTCCGACCGCACAGGCCATTCCTGGTAAACGCTGTTCTCCGTGCGTGGGTATGGTCCCACTCCCTCGTTCTGCCCGTGGCCCCCGCTGTCCAACTCACGCAACGCCCGGTGCTGGTCGCTCCGGCATGAAAGAGTGAGGCTGTGGCGATAGAAAGACTCCGAGACCTGTGTACGGCCATGGACACGGCAGCGATAGACACCTGGGGGCGCATCGAATTCGGGCGTCTTCCCGGGCGCAGGTTCGACGAGGCCTCTGTCACGGACAATTTGCTCTTCACGCTCCAGAACCAAGTGCCTGGACTGCTGACTTACCAGAGCAGCCAGGTGCAAGAGCGGGATTCAGGAGCTGACTGGGAGTGGTGGATCGGAGACGACCAGGCGGGGTGGCTCTGCCTTCGCATCCAGGCCAAGCGCGTCTACGAGGACAACACTTACCGGATGCTG # Questionable array : NO Score: 3.43 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:-1.76, 8:1, 9:0.32, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 34997-33193 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMRT01000017.1 Streptomyces abikoensis strain JCM 4002 sequence17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================================================================================================================================= ================== 34996 29 89.7 32 ..........T......A.......C... GGGGCCGGTCTGTGGGCGGCTTCGCAGCGTGC 34935 29 89.7 25 ............T....A.......C... TCCCGTGTACCCGGGGCAGCTTGAG Deletion [34882] 34881 29 89.7 32 ........T...G............C... GCCATCACCAAGACGGTCGCCGACGGGTGCGG G [34860] 34819 29 93.1 32 .............C...........C... CCGCGCCGCCTGAGCGAGGAGGCGTTCGGTCG 34758 27 79.3 205 ...........--........G..GT.T. GATCTGGTGGGCGGGGCGTCGCAGGTGTCGGCTGTTGTCCTGCAGGGATCAGCCAGCAAGTGGCGGTGCCTGCGATGCTGAGTTGGCTGTGCTGTCGTCCGTCGGCTGTCCGTAGCGAGCGGGGGTGGGTATGTTCTGTTTGCCTGAGTCGGTGAAAGTGCTCAAAAACAGCTCCGCTCGGTTGTAAAGGTGCAGGTCGCAAGGT 34526 29 100.0 31 ............................. CCCGTCCTCGTCGGTCACCAAGGCGTATGCG 34466 29 75.9 32 ACCA........T...........GT... CGTGCCGCGCTCGACCGGCTGCTCGGCCCGCT 34405 29 89.7 31 ...T..........G.........G.... GTGATGACCGGGGCTTCCGACGTGTTCGGGG 34345 29 89.7 32 ...........A.G..........G.... GGCGGCATGGACCTGCACCGGCACGCCCGCGC 34284 29 82.8 56 ...........A.G..T....G..G.... GACGAAAAGCATGCTGATGGTCCCGAGTCCAGTGGCCAGGCCGAGACGGTGATCCA 34199 29 79.3 32 ...........ATGT.........GT... TGCCCGTCCTGCTCGTGACCCTCCAGCAGGGG 34138 29 89.7 32 ...........A.G..........G.... GGATCACCTCTCACACCAACGAAAGAGGATCA 34077 29 82.8 32 ........G....GT.........GC... CCGGGGTTCTGCAAGCAAGAGGGCGTACAGAC 34016 29 89.7 32 ...T..........T.........G.... GCGCGCGAAGAGGAGTTCGCCGAGCTGTCCTG 33955 29 86.2 32 ......T.....G........C..G.... GACGTCTCGCCGAAATCGGGGCGGCAGTGGAT 33894 29 93.1 32 ........................GT... AGAGGCATCCCGGCCCAGTCGTGGCCGGCCGC 33833 29 89.7 32 ..............G.........G...G GCGATGGTGAAGCGGTTACCGAGCGCGGTCTC 33772 28 86.2 32 ........-.....T.........GT... TTCGAGATGGCTGGCGCCGTCAAACGGGGCGA 33712 29 82.8 33 .C.....T...............TGG... GAGGGCTTCACCAAGGACGGCCGTCCAGGCTGG 33650 29 86.2 32 ...T......T.............GC... ACGTGCGCGAGGTCGACGTGGGAGAGGTCGAC 33589 29 96.6 32 ...T......................... GTCCGCGACGCCGGCATCCAGGTCGTGGCGGT 33528 29 89.7 39 ....G...................G..T. CTTGTCCGTGAGGGGGCCTGCGTCCTGTGCCGCCGATGA 33460 29 75.9 86 .......T..T..GT.........GCT.. GGCGAGATGGGCGCTGGCGTGCTCAGTGTTGTCTGTTCCCCGCGCGGGGGCCCGTCGACCGTGACCACCGCTGTGGTGGTGTGGCT 33345 29 100.0 33 ............................. GCGCTCGCGCCCGTGAAGCCCGTGACGTCGTCG 33283 29 75.9 32 ...T.G....T...T........ACT... GGCGAGGCCGGGAAAAGCTTGGCGGCAAACCG 33222 29 72.4 0 .....T....T..GT.....A...GTT.. | G [33206] ========== ====== ====== ====== ============================= ============================================================================================================================================================================================================= ================== 26 29 86.8 42 CTGCTCCCCGCGCACGCGGGGATGAACCC # Left flank : GCTCGGCCGGCCAGGGCGAGGCCGACCTCGGCCAGCGCTGACCGCATTCGTTCGGTCCGCTGGGTGTGTCGGCGGGTCAGGCCCGTGACCTGCTCGACGAACGTCTGCCGCTCGCATGAGGCGTCGTCGCACGTGAAGCGCCGGACCCGCAGCCGCAGTACCACCCGCCGTCCTGCCACGGGAAGATCGGCGGGAAACCGCAGGTAGGAGCCGTGCACCCGCTCCGACCAGCTCCCGCAGCCCGGGCAGCACGCCTTGGTTGGACGGGATCTGACACCGACCCGGACCACTTCGCCGTCGTCCTGCACCGACACCACCCTGATCTCCGGAGCCGACAGGAAGAGCAGCTCTTCCAGCCGGAGCAGTACCTCGCGCACAGCCCAGAACCATCAGCCCGAACGCCGCCGCCACCGGCCGTTTCCAGACGGTCTCGGGAGGCAGTCACACCACAGAAGTGGATCAGAACCACAACTCACCTACGAAGCCAGCAGCGTGAGGTC # Right flank : TACGGGGCGAACCCCCACATGGCTGGTGCCCACTGCCCCGCACGCGCGGGGATGGTTCCGGCATCCTGCGTAAGGGCTGCATCGACGTAGCCTGCTCCCTCCGTACGCGTGGCTAGGATCTGGCTGGCCTCGAACCCTCGCTCGCGTCGACCTGTTCCCCGTGCGTGCGGGGATGGATGGACCCGAGACGCACCACTGGGCTACCGGCAACTCCGGCCTGTTCCCCGTGCTCGCGGGGATGGACCCAGTCCCGCGCTCTTGAAGACTGTCCAGCCGCCCTGCTCCGCGTGCGCGTGGGGAGGGGTGCGGGGCGGATGGGTTTGCCGTGCTCGGTTCTTCGCTGTTCCCTGTGTGGTGCGTGATAATCGGGTATGGCTCCCTCGTCTGCGTTTGATGCGGTGTCCGCGCTTGAGGTGCTGCGTGCCCGGTATGCCGGTCAGCTGCCGGCGAGTCTGGATGATCTGGCCGGTCCTGTGCGGGGCAGGGTTGATCTGCCATTG # Questionable array : NO Score: 3.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.39, 5:0, 6:0.25, 7:-0.93, 8:1, 9:0.13, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGAACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [14-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,4.77 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 4 40133-39200 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMRT01000017.1 Streptomyces abikoensis strain JCM 4002 sequence17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================================================================================================================================ ================== 40132 29 86.2 32 ...T.........GT...........G.. GTGGCCTGCGCTGCTGAGACGATCGGGGCGAG 40071 29 69.0 204 .....T......TGT.T..A...CA.T.. GAACTGGCGGGTGGGTGTCGCAGGTGCCGGTTGTTGTCCCTTGGAGATCAGTCGGCAGGCGGCCCTGTCTGCGATGCTGAGTCTGTTGTGCTGCTGTCTGGCGGCTGTTCATCACAAGCAGGGGTGGATGTGTCCTGTATGTCTGAGTCGGTGGAAGTGCTGAAAAACAGCTCCGCCTGACTGTAAAGGTGCAGGTCACGGAGT 39838 29 100.0 32 ............................. TGGTCCCGGACCATGACTGGGATAGCGTTCTG 39777 29 96.6 32 ............................A CCGGACTGTCTGAACAGCGCCGGGGTGTGGTG 39716 29 96.6 32 .........................C... TCTGTACCTCAAGCCGGAGTAGACAACGCACT 39655 29 82.8 32 ...........A.GC.........AA... GAGGCCCTGCGCCTGGCCTAGCAGGTGCCGCT 39594 29 86.2 32 ...T.........GT..........A... CTGGTCATGCTGGCCCGCACCGCCGTCAGCCC 39533 29 93.1 32 ..............C..........A... GGCAGGGCTTGCTCGAAGGCAGTGATCGTCTC 39472 29 96.6 32 .............G............... GCCCGTCAGCTCGGCCGGCTGATCGACCGCAC 39411 29 82.8 32 .....T....T...C.........C...T CGGGGGCCGGACATGCCGGCTGCATGCATCGC 39350 29 82.8 32 .............GCT.....G......G GATCAGCTCACGGCGGACGTAGTCGGCCAGCA 39289 29 86.2 32 .....T........T.........AA... AAGGGTGACGCAGAGCCCGAATGGCTGCGTCA 39228 29 86.2 0 .....T.......TC..........C... | ========== ====== ====== ====== ============================= ============================================================================================================================================================================================================ ================== 13 29 88.1 46 CTGCTCCCCGCGCAGGCGGGGATGGTCCC # Left flank : GACACGGCCCGCTCAGCACCGAGAGTCAGACCGTAAATACGCAGATCACAACGAACGACCGCAAGTGACCGTGCTCTGAACGAAGTTGGACGCAGCATGCGTTCGGGATGCGGTCACTGTGCCCGTTCGCCGAACGTTTCCTTCCGGCGCCTCCAAGCTCTCACCACACACCGGCGCGAGCAGAAGACGGTGTTCGACCGCCGGTCAACGCCAGCCACCCACCGAGCCCCGCACTCGGGACACTCCACCTCGCCCGCACCGCTCAGCGCGGCAGCCGTACGCTTGCGCAACCGCCGGTCCGTACGCCACTGCCTGGCACGACACGCCGCAGAACAGAACAAGGCGTCAGGCCGCGCGCCTAGCTTCAGCCGGTCACCACAAGCCCGACAGATCCTCTCTCCGCCCTGCCCGGTACCCCTGGACACCGCGCCAGCGTAGAACCCAAGGCTACTCAGATCCGGGGATCAGAAACACGCACTCATGGCGAGAGGTCGGGCATC # Right flank : TGTGCTCGCGGGGACGGTCCCGGTGGGGTTCCGGGCTCGTCGGCGAAGGTGGACTGCTTCCCGCCTGCGTGGGGGGGCTGTGAAAGAGGGCATGGCTGGAGTGACTTGTGCTGCTCCGTCGGTTGCCTCACGGGTGTCAGCCGGCAAGCGGCGGGGTCTGCGATGCTGAGTCTGTCGTGCTGCCATGCGTCGGCTCTCCAACAACAAGCGAGGATGGACATGCTCCGTATGTCTGGTATGCCTGAGTCGGTGAAAGTGCTCAAAAACAGCTTCGCCTGGTTGTAAAGGTGCAGGTCGCGGAGTCTGCTCCCCGCGCACGCGGGGATGGACCTCGCAAGGGCGGGGTCGGTAAGTCGCTCTTGACCTGCTCCCCGCGCACGCGGGGATGGACCAGATGACGGCCGCCCCTGGTAGGACAGGAACGGCTGCTCCCCGCGCACGCGGGGATGGTCCCTTCCAGACGATCTCCAACCACGAATCGGGAAACTGCTCCCCGCGCA # Questionable array : NO Score: 3.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.52, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.22, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCAGGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCAGGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.40,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //