Array 1 1058-2100 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHQT01000277.1 Leptospira noguchii strain U73 U73_Contig_277, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1058 37 100.0 34 ..................................... CCTAATCGTTCTATCGGACGGAGATCTTGCTTTA 1129 37 100.0 35 ..................................... CGATTTTGGTCACCCCGTTGTGTAACTCTAATAAT 1201 37 100.0 34 ..................................... ACAAGTTGTGTGTTCGTCAAATCGAATTCGATAG 1272 37 100.0 32 ..................................... CCCTCTGACGTTGATACGCCAACAGATCCCGT 1341 37 100.0 33 ..................................... TCTTAACGGTTTTTTTGATTTGAATCGCGTTGT 1411 37 100.0 36 ..................................... TGAATCAGAATCTTATTTGAATCCAAATTCTTCTTG 1484 37 94.6 35 .......T...............G............. AAAAGAAGAAGAGGAAAAAATCAAAAGGGATACAA 1556 37 100.0 37 ..................................... CTCTGCTAAAAAACATTAAAATTTCCTAATATTATAT 1630 37 97.3 34 .......T............................. TTCAGACGCTTTTGATTTGCCCGCAATTGCGTTT 1701 37 97.3 36 .......T............................. AATGTCGGACCTTTTTCATAAAGATATTCCGTTCGA 1774 37 97.3 35 .......................G............. AAAGGATATAAAATTGAATCCTCTAAAATTAAAAA 1846 37 91.9 38 .......T...............G..C.......... TTTAAGTTTTCCTGGGGTATCAGAGTCCTTATTTGTGT 1921 37 97.3 34 ..........T.......................... CATTCTGCTTTTCTAATGCGGCGGCCGCTTCGAT 1992 37 83.8 34 T......T..............AG..C.A........ TTTAAATGCGTCAACGCTGACGCATTTGGAAGAT 2063 37 67.6 0 .......T...........AG.AT.CATA..A...GT | C [2085] ========== ====== ====== ====== ===================================== ====================================== ================== 15 37 95.1 35 GTTTCTTCCTCTTGTTTGAGAGGAAGTGGATTGAAAC # Left flank : GTTTATAGAGAATTTTACTAGGTTGTTTCAAAACTAAAAACTTTGCGAATGTTTACCGACGAGTCACTGTTTTATTGAGTCTAAATTCAATTGTTTTTGAATTGATCCTTTCAAAATCTCTAAAATTCGTAAGACCTAAAAAACATTTTTTTTAATTTTAATTTGAGACTGCTTCTAAAAAATCCTTTTGCTTCTTTTCAAAAAATTTCAGTTAGGTGAGAACTTTAACTTCATTTATAGCTTAAATCTATCTTTCCTGGACCTCCTTGTTATAGGTTTGCCTTTGAGTAGCCGATCTTTTACAATGAATTGTTCTTTGCGAACCTGTTTTTCCCGATTTATTACGGACCTTTCGCGCTCTTGTATAGATTCGTTGTTTGGCGATTGAACAGATTTGCTTAACAATTGTGCAGTATGGTAAAATAGGTTCGCGATTATTATGTCTAGAAAGTTTAATAAAGCATTTTATAATACATTATTTTCAACCCTATTAAGCCGTT # Right flank : TGTCTAAAATTCCGTTCCTGAAACGGTGCTACTTTCAAAATTTATAATACTCTAATATATAAGATAAATAGTATTCTAGTGAATTGATAGGCAAGAATGATAATTTCTAAGTTTTGTGGTAGTTCCCGCAAATTTAGGGAAATTGAATATCAAACTGCTACAGGCTAAATGTATAAACTACGACTGATTTCCATTTAACAAAAGTTAGTAGGAAAAAATTTTTCTAAAAATAGGAGTTCCTACATTCATTTGTATTTTTACAGACTGAAGCCTCTCTTTCGGAGAATGACTTAGAACTTGTCTCAAAACCGTCCAATATGGGAACTATTACGAAAATGGAACGACATTAGAATTGTTTGAAAGATCGCAAATTGCTAAATGCGATTTAATTTATAGGAATTACTATACTTTATTAAATATTTCTAAAGAATGACCGAGCAAAATTCTTTGAGATTTTGGGACAAACACTTGGTTTTATAAGTTTTACTGTAAAAATTTAG # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:0, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTCTTGTTTGAGAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.50,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 1 12019-10831 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHQT01000035.1 Leptospira noguchii strain U73 U73_Contig_35, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 12018 29 100.0 32 ............................. TTTTTATGATTTTATCTCTTTCCAAGAAGATA 11957 29 100.0 32 ............................. TCCGAATTCGGCCATTGCCAATTGAGTGACAA 11896 29 100.0 32 ............................. ATGATTATGACGGACTTTTGAATATTACAAAT 11835 29 100.0 32 ............................. GATCTTTTCATGGTCCAAACTATGCGCGTTTT 11774 29 100.0 32 ............................. GGTTTTCGCTGGGTAAAATTAAATTAGGATCT 11713 29 100.0 32 ............................. AACGGATGAGACAGGATATGTTAGTGATAGAT 11652 29 100.0 32 ............................. TTTATCGACATAGACCCAAAGGGAACTTGCCT 11591 29 100.0 32 ............................. CGCTAGTACTGCACCGTATTCTTTGTCTCTTT 11530 29 100.0 32 ............................. ATGTCTCTCGTTACATTTAGATAACTCGTCCC 11469 29 100.0 32 ............................. GGCAATGACGTAGACTGGGTTGATATAGTTGA 11408 29 100.0 32 ............................. AATGCGACCTTGCTTAGAAAAGGAACTGATAT 11347 29 100.0 32 ............................. CGGACAATAGTGATAAACCCACATTTGATTTA 11286 29 100.0 32 ............................. ACATTTCGCGCAAGGTTGAAAACGGCCTCCGT 11225 29 100.0 32 ............................. TAGCCCAAAATTGTTCGACTCCTGAATTGAAA 11164 29 100.0 32 ............................. GACACATTTTTGCAGGGAATTTTCCCCGTAGA 11103 29 100.0 32 ............................. GGACTCCAAAACAAGTTTTAAAATGGATTCAA 11042 29 100.0 32 ............................. TCAATATGCAAGAACGGGTTGCGGGAAATGTG 10981 29 100.0 32 ............................. GTATATAACGGATTACTTTTCCTGTTAAATTG 10920 29 96.6 32 ......................C...... GCGACCAATCGCGTTTTAGACTGGGCTGTAAA 10859 29 93.1 0 .........................TT.. | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.5 32 CTATTCCCCACAGGCGTGGGGTTGAACCG # Left flank : CAAAGTAAATTGTTAAAACGCATTATTCCCGATATGAAGGAGTTAATCTATGGTGGTACTGATCCTGGAGAGGGTGAAGACTTCACAGAGGGGCGAGATGTCGCGGTTAGCCATTGAGTTAAAACCGGGCGTTTTTGTTGCAACCGTTGGCGCAAGAGTTCGTGATCAAATCTGGAAAAAGATTTGTGAAGAATGGAAATCGGACGCTCTCATGCTCTATTCGAGCAACACCGAACAAGGTTATATCATTCGTTCGAATGGAGATCCATCCAGAGAGATTGTCGAGTTTGACGGTATTCAATTGATTGCCAAGCCCGATCCGAAAAGTGACCATATACAAATTACCGATGAGATTGACGAATCAAATACCGAAATCAATTCTCCATTTCCAAATATAGAAGAATTTTTTGTAGAGAAGGCAGACTCTCTTCGCGCAGAACTGGATCAAAATCTAAATAATCCGTAGACATAATATTAGATCTACTATACAAATTCTTAGA # Right flank : AGGATTTCGTATCTCACTGACCTCTGACATTCCTCAAAAAGCTTGGCCTTTACTTTGCTGATCCGGCAAACCACTGATTGCTTGTCTTTCCTTTACAACATATATACTACGATAGAGAGTTTGTCCTATTTGAAATCTTCATTTAGATTTCTTCCTGGCGTTGTTGAATATTAGCAAGGCCCCCAACTGTCCTCAAGACTTTCGTAATAGGGCAACCTCACGACCAACCGCAGCACCGAGAAGCGACAGTGTCGCTGCGGATGGTTCGTCATCCCGGTCCGGAAAGGGGGCGTTTCCCAGCCCTTACCGGGCTGGGCCGGGCTCTCCGCTCCGGTCCTTCGGACCCCGCTCGATCCCTAACGCGACGATCCATAGAGAGTCGTGTTGCTGAGTTCAGAGAGCAAAGCGAACGAACGCGACGACAGCGGATCTCCTTCTTGAGATTAAGAAAAGTAATACCGAACCTTACATCGGATCGGCAAAACTTTTCTGAAGAATTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCACAGGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGCGTGGGGATGAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4717-4466 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHQT01000033.1 Leptospira noguchii strain U73 U73_Contig_33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 4716 37 100.0 34 ..................................... TCTTCAGTAGCTCCTGCTTCTTGAATAAAATAAG 4645 37 100.0 34 ..................................... TGCATAAAACCATCTTTGTCATAAGACCGTTTGA 4574 37 100.0 35 ..................................... CATAAATAGATCAAGAAGCGTATCCGCCGCACGTA 4502 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 4 37 100.0 35 GTTTCTTCCTTTGTTCGCAAAGGAAGCGGATTGAAAC # Left flank : TGTAATATCTTGATTTGTGAGAGTTCCCACATCACTTTACTGACAAACCTAAATTTTGTAATAGTTCCCACATTTAAATACTACAGATTCAAGTATTATAAAATTCTATTTTTTATTGTAATAGTTCCCACATTTAAGGAATCGATCTGTAAAGTTCAAATTCCAACTTTTTAGAATCATAAGTTCCTTACGCCGAACTCACGTAATATTACAATGACTCAAAACCAAATATTACGTCTCTTTAGATATTTAAGAATAGTTTATTTTTGTTATATTATTGACCTTTAAAATCCGATTATTCTATAATAAAACGCTTTTGCGAACCCGTTTCTCCCGATTTTACACGGGACTTTCGCACCCAAACGTATACACGTCGTTTGGCGATTGAATGGTTTTGCTTAACGTTTATTCAGTATGGTACATACAGACTCGCAATTATTATGTCTAGAAAATGTTATTAACCTTTTTCTTATACATCTTTGCGGGGCTTTTGAGCCGCT # Right flank : AGGTCAAGCGAATCACCAAACTTCTTTTTGATTTGTTTCTTCCTTTATTTACAAAGAAAGAAACAAAAAAGAAATATGATTCATTCCTTTAACGTGAATACGATGTAATCAATGTAAAAACAATTGAGGCGAGAAACTTAGTGTTTCATAGATAGGCCTTTGTTTAGATCACGCTCTAAACTCAAATCCTCAGGAATATTTTTTATATCCGATTTGTAAAAACAGTTTAATTTTTTAATTGTCAATTACTTGTGAGATTGAACATTCTGAATTTCAAATGAAAGTATGGAATTTCCCACAAATCATTGAGATTCACTACTTTTTCGCCGCTATAAATTTTTTGTATGAGCGCTACATTCCATTTTTGTAAAAAACGAACCTTTATAAAATTACAATTTTTAGATACGCACATTCCACATAACGACCGTTTATCTCTAAGTTAAGTATCATTTCAAATGACTTTCAATTTAAACATAAAATATCATTTTTCCTCCATCGGA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTTTGTTCGCAAAGGAAGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.30,-8.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 1793-1122 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHQT01000039.1 Leptospira noguchii strain U73 U73_Contig_39, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 1792 37 100.0 34 ..................................... TATATCCATTGTGATGACCGTTCCGAACAATCCC 1721 37 100.0 33 ..................................... AATTCCAGGATCTGTTTGGTGCCAACCGTTTGT 1651 37 100.0 33 ..................................... TAAATAAGAAAATTGCTGGTGACGGCGATGAGG 1581 37 97.3 33 ..........................C.......... ATCATCTCCCGACAAGGTGATTGGAATCGCTTC 1511 37 100.0 35 ..................................... CGAGAGATGGTTCCAGAATGTTTTTTTATGTTTGG 1439 37 97.3 35 ..........................C.......... CACTCCGGTTTGTAACGCTCCGGAGGGATTAAAGT 1367 37 97.3 33 ..........................C.......... ATAAAAGGGAGGTCATTTGGTCCGATTGCGCGT 1297 37 97.3 33 ..........................C.......... ATGGAAGCGGCAGGGGAGACGTTGGAACAGAAC 1227 37 100.0 32 ..................................... TCTAATGCTTTCATGTATTCGGATGCGATTTT 1158 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 10 37 98.9 34 ATTTCTTTCTCTTATTAAAGAGGAAGTGGATTGAAAC # Left flank : AGAAAGATTACCACATTCCAAAGATAGAATTTTATCTTCTTCGATTTTTCCCCATTGAATTGAGTCCTTTTTTTTAAATCGTATATAGTTAGTTGCCATACAAAATACCTAAACGTATAATAAGAGTTTTATAAAAATGCCATATTTGTGATCAATATAATTTTAAAATAAAACAATCGGTAAAGAACATATTTAGTTGAACAACATTTTTTGTTTATTTTTATAGAAAACCCTCCCCATTGCAAAAATGAAGCGGTTTTTTGGTTTCCAATATTCTTGACTTTTAAGAGGCGATCATTTTATGTTATAGCACTTTTTGCGAACCTGTTTCTCCCGATTGATTGCGGTCGGTTCGCGTTCAAAGGATTTATCTCTGTTTGTCAATTTGGAGGTTTTGCTTAGCATTTATATAGTATGTCACGTTTAGGTTCGCAATTATTATGTCTATAAAAGCTAATAAAGCTTTTTCTAATGTATAAATTAGTATCTTTGTGGCCGCT # Right flank : GTTTTGGAACGGGCGAGAATCATCGTGTCGCCAAATTTCTTTCTCTTATCAAAGAAACGGGTTGAAACCTCAAAAAGACGATTATTATAAAAATAAAATTATATAACGTAAGTTAGGTGCCGATTATTTTTTTGTAAAAAAGTGTGCAAATTGCTATAAACGATTTGAGTTCAAGTTAAAAAATGTAGAAATTAATACATTCTATAAATTAAATATACAAATCTATCGTTCAACTTTATAGTAAAATGCAATTATGAGGCGCAGCTCGTGGGAACCTCATACAAATTAAGAATATTCTACCTCGATTTTCCATAGAAGATTTTGTCAAATTGCCGGTTGAATTTATGGAAGGATTTGAAAAAATAGAGTTTCGGAGAATGTTTTAAAATAATAAGTCTGTAATCAGGTTGTAGTAAGTAAGCATAATTTGAAGTTCTAAATCAAGTAAGTTGTGTTTTATCATATTTCCTAAATTAGAGTTGTTGAAAAATTTGGAAAAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCTTTCTCTTATTAAAGAGGAAGTGGATTGAAAC # Alternate repeat : ATTTCTTTCTCTTATTAAAGAGGAAGCGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : NA // Array 1 2270-1100 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHQT01000038.1 Leptospira noguchii strain U73 U73_Contig_38, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 2269 37 100.0 33 ..................................... AGTTTCTTCGGGTTATCGCTCTCCGGCTGTAAA 2199 37 97.3 35 .................T................... TTTTTCGAAACGAGATTTCATAGATTTTAGCGCTT 2127 37 97.3 34 .................T................... TATTTTATTCGATTCGTATTCGCGCTTTGGAATT 2056 37 97.3 34 .................T................... TTTTTTTCTGAGGATTAATTTTGCGTTGATCCAA 1985 37 100.0 30 ..................................... GATTTCGTTAATCGAAATCGATCCGGAATC 1915 37 100.0 33 ..................................... CCTAATCGTTCTATCGGACGGTGACCTTACTTT 1845 37 97.3 32 .................T................... AATTTGTCCATTTAGTTATCCATGGCGCCAAG 1775 37 97.3 34 ..................A.................. ACGTTAGTTATCTCTCAGCCTTACCGGTTGAGAA 1704 37 94.6 34 .................T.................T. ATTTAATACCCTATAGATTGAACGTAGTTGGGGA 1633 37 97.3 31 .................T................... TGTTTTATCTGGACTGATTGTTTGTATTTGC 1562 37 97.3 33 ..........................C.......... AAAACGGGAAAAAGCACGGACCGGGAAAAATCA 1492 37 97.3 34 ..........................C.......... GCTATGGGGTCTCGTTCGTTGCTCATGCTATTAA 1421 37 100.0 33 ..................................... TGTTTAACTTTGCTGAAAGCATCTTTTTTACAT 1349 37 100.0 35 ..................................... AGTCTGCATCACACCTCTCCAAGCTACATAGAATT 1277 37 100.0 30 ..................................... GATTTCGTTAATCGAAATCGATCCGGAATC 1207 37 97.3 34 .................T................... TTCTAAGGTGACGTATTTTGAATCATACTTACAT 1136 37 94.6 0 .................T.................T. | ========== ====== ====== ====== ===================================== =================================== ================== 17 37 97.9 33 ATTTCTTCCTTTGTTTGCGAAGGAAGTGGATTGAAAC # Left flank : ATAAGCCATAAATTCTGAAATACACAATCGATTAGAGCTTCTATATTTTTACAATATTCCATCATTTACTTATAATAAGGTCCTGCAAATTTTAGAAACAAATCCAGTTTGGCCAAAATTCTGGACGCTATGGTTTCTGAGTTAATCAAGTCTTCAAGTCCAGCGTCTGGACAATCATCTCAACAAAAATGAAAGGATACTTGAATGGAATTTAAGTTAAATTTCAAAATTAATCTTTTTAGTCACACAAACTTAACAATTCGAAATTCAATTTTCTTGACTTTAAAAAGCAGATCATTTTATGATAAAACGCTTTTTGCGAACCTGTTTCTCCCGATTGATTGCGGTCGGTTCGCGTTCAAAGGATTTATCTCRGTTTGTCYATTNGYAGGTTTTGCTTAYCYTTTATATAGTATGGCTCCATTAGGTTCGCGATAATTATGTCTAGAAAAGTTAATAAAGCTTTTTCTAATACATCGATTAGGGCCTTTATAGCCGCT # Right flank : ATTTAAAACATCTTCGAAAAACGTTAACACGACTTAGTCGCCCCTGAAAAAGTGTTCAAATGACGAATAACGCAAATAAAACGTTATCCAGATGGATCGAATCAAAAACAAAACCACCGTAAAGCATCCAGAAGCCACGTAAAAGGCGGTGAAAATGAAACCAGAAGAAAGCTCAAAACAAAAAAATCAAGGTGAACTATTTCGCAACAGATTAGACCAAGATCATAGACACCCGTTGTATCAAATAGCGAACAAGATAGACTGGGAAAAGTTTGAGAAAGAATTCGGAAAGTATTACACAGAGAAGATGGAAGACCGGGCTTACAAATACAATTGTTAGTTATACTTCACTACTTAGAAAACGCGTATAACGTGTCTGATGAGAAGGTTATTTAGAAAATCKGTATTGGCAACATTTCAAGTGACTAGGTTTTAGTCTTAGATGTTAGTTATATTTTCGTAATAGAGCGATTTCGGTTTAAACAAAGTAAAATCTCTCT # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCTTCCTTTGTTTGCGAAGGAAGTGGATTGAAAC # Alternate repeat : ATTTCTTCCTTTGTTTGTGAAGGAAGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.50,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 27542-28007 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHQT01000013.1 Leptospira noguchii strain U73 U73_Contig_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ====================================== ================== 27542 38 100.0 32 ...................................... AGTATCAATCGCATCAACAACAGACTCGTCGG 27612 38 100.0 38 ...................................... TTAAAGCTATTACAGAAAGTTCAATAGCTTATGCAGCT 27688 38 100.0 33 ...................................... AGACCATTGGAAGTACGAGAGAAAGAAGTTAGA 27759 38 97.4 32 A..................................... CTCGATGATTCGGCCTCTGCCTCTATTTTATT 27829 38 100.0 32 ...................................... TTTTTTGCAACAAATGGTTATGAAGTAAAAAT 27899 38 100.0 33 ...................................... CCGATACAGACGATAAATAGAGAGAGTCCCGTC 27970 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ====================================== ================== 7 38 99.6 34 TGTTTAATCTCTTCTTTTAGAGAAGAGTGGATTGAAAC # Left flank : CTCAGCGTCTCGCTTCTATTGGCGCTCGACAGGCTGGACAAGTTCTTAAAGAATAATAGAGTTGTCGAAAATTTCATAGTTCAGATCAAAAAACTTTTTCAATCAACCATTTCCATAGAGCAGAAACTGGGAAAAGTAATTTTCAATAAATCTAATGTTTTTAAAATATTAGATTTTACAACAAACCTAATTTCAAAATTAGCAAGCAAACGTTCCCTTAATTACGTCTCTTTAGATAGTTATAAATTTATAATGTTCTACTTTTTTAATCTATATTATTGACCCCGGAAAGACGATTATTTACAATAAAACGTTTTCCGCGAACCTGTTTCTCCCGACAAATCACGAACCTTTCGCACTCTTGTATTGTTTCTCTGTTTGGCGATTGAACGGTTTCGCTTAACGTTTGTTCAGCATAGCAGAAATAGGTTCGCAATTATTATGTCTATAAAGTCTTATAAAGCTTTTGTAATTCATTATTTTGGATCCTATCAAGCCGC # Right flank : CGATTACTTATATAGTTTTCTTGGATTCAGTCGCATTGTGAAGTTTATAGATTTTTAAATCGCATTCTTACTGTTCAATTCAGCGGTAGTTCCCACAGATTTTGTCGCATTACGAGTTTTTAAACATTCATTTTTCGTAATTAGAATTTGTAATAGTTCCCACATTTTATTTTTACGGAAAAATCAGTTTTTATAAAGTAAATCTATTGTTTTGAGTTTTTTCTGGTTTCATTTTCACCGGTTTTTGGATGTTTTTCGGTGATTTTGCTTTTTACATTTCAATTCTGGATAACATTTCATTTGCGTTGACCCTTTTTCAGAGACGACTATAAACTACCTACATAAGTAAAATTGAACTTCTTTTTTAGAAAAGAGTAAATTGAAACCTCAATCGTCAGAATCCAATTAGATTTCATGTTTGAAATTCTCTAAAAGTCTGTCTCAAGCCTAAAATGATCAAGATTTGATCATGGAAATTTCACAAACGCCAGATGTGGCGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTTAATCTCTTCTTTTAGAGAAGAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.10,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //