Array 1 21063-20745 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB906180.1 Thioalkalivibrio sp. ALE11 F620DRAFT_scaffold00017.17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 21062 37 100.0 34 ..................................... CGTTGCGGTGTTCGCTGATGTGGTACATGGTGTT 20991 37 100.0 33 ..................................... TATGTCGACACCTGCGGATGATCCATGCGGTTG 20921 37 100.0 34 ..................................... ACGTCAGGCGCGTTTGCCTGCGCAGCCTTTGCAG 20850 37 100.0 32 ..................................... CTTAAACAGCACCTCGCTTGCCGCCTTGATCC 20781 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================== ================== 5 37 100.0 34 GTTGAACGACAGCCCTGAAGACAAAGGGATTAAGACC # Left flank : GGCGCTCTGGACCTTCGAGGGCTGGCTCTATCTGGCGGCCATCATGGATTTGTATGACCATCAGCTCATCGGTTACGCCCTGTCCGACAGCATGCCGGTGGCGTTGCCCCTGGAGGCCCTGGAGATGGCGGTTCGGCACCGCCGGCCGGGTCCGGGACTCATCCACCACTCGGACCAGGGCAGCCAGTATGCGTCCACGGCGTATCAGGGCCGCATGGATGCGCTGGGTTTCGTGCCCTCCATGAGCCGCAAGGGCAACTGCTGGGACAATGCGGTCATGGAGCGCTTCTTTGGCTCGCTGAAGAGCGAATGGACCGATGCCAGGGTGTACACCACCCGCGAAGCCGCCCGACTGGATGTCGTGGAGTACATCGAGATGCAGTACAACAGCGTCCGACCCCATACCGCACTGGGCAGCCTCTCGCCCCGGGAATGGGAAAAGGCTGCTGCTTAAGATGGGTGTCCGTTTTTACTTGACCAGAACAGACGGGCAACCGCGT # Right flank : CGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTCCGCCCGGGAACGGCTGGCACCGCAGGTTGCGCGGGCGCGGGAGGTTCTGGAAGCCACGGGTCAGTCGTCCGGCCTGAGTCTGTGGCCCGAGCGGGTGCGCATCCTCCCCAACGGGCCGCCACTGGACCCGCCGGCCATACCGGAGGGCGTGTTCGCGACCGTGCAGCAGGGCCTGCTGGAACGCCGCTGCCTCGACATCACCTACCGCTCACGCTCGAAGGAGCGGGTGCGAGACCACCGTATTCACCCTCTGGCGCTGGTGTTCCGCGAGCCGGTCACCTACCTCCTGGCTACCATCGAACCGCACCAGGACGTGCTGCATCTCGCGGCGCACCGGATCGAGGCTGCGGCCCTGACGGAGATGCCGGCGCGCGATCCGGACGCCGGCTTTGAT # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACGACAGCCCTGAAGACAAAGGGATTAAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 2 24818-23735 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB906180.1 Thioalkalivibrio sp. ALE11 F620DRAFT_scaffold00017.17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 24817 36 100.0 34 .................................... TCCCGCGCCAGGTCAAGCGGGTGCATATTTTCTA 24747 36 100.0 33 .................................... GCAGCACTCGCTCAGGATTTGATCCAGCTTCTC 24678 36 100.0 33 .................................... GCGCAGCGGCTGCCGCCTTCGCTTTCTCACGCC 24609 36 100.0 33 .................................... CTCGGGGGACAGAGCCAACGGCACCTCCGTGAC 24540 36 100.0 34 .................................... ATCCCCGATTCCTCCGGCGCGTGATCTTGTTCTC 24470 36 100.0 34 .................................... CCGCTCGTGCAGGTACTGCACGAGCGCGGGGTGA 24400 36 100.0 33 .................................... GCGCGGTCTTTGTCATCCTTGATTTGCAGGGCC 24331 36 100.0 34 .................................... GCCGATCCGGCGCATACGGGTGCGAAGGTTCTGA 24261 36 100.0 34 .................................... GTCCCCGGACACAATCGCTTCGCGCAAATGCGCC 24191 36 100.0 34 .................................... GGAGAACATGCGCAAGGGCGTGCAGCAGGCGCGT 24121 36 100.0 33 .................................... CTGTCTGCGACGCAGACACCCATTCCGGCTCTT 24052 36 100.0 34 .................................... GAACCGCACAGCATCCCTTGCCGCCCTTGGCTAT 23982 36 100.0 35 .................................... GCCGAGTTCCTCCGCCAAATATGCATCGACGAACT 23911 36 100.0 35 .................................... TGTTGATCTGAGTCTGGTGAGCCATTTCCTATCTC 23840 36 100.0 34 .................................... ATTCGGCGGTAGTGTGCGATAGCACACAATGAAG 23770 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =================================== ================== 16 36 100.0 34 GTTGAACGACAGCCCTGAAGACAAAGGGATTAAGAC # Left flank : CGCTCGGCCGCCTCCTGCACCAGAGCTGACGACTCGCCATGGCCCGCAACCGCTCCATCCCCTGGCTGATCGCCTACGACATCAGCGACCCGCGTCGGCTGCAGCGTTTTCATCGCTTCCTCCGCCAGCACGCCACGCCGGTCCAGTATTCGGTGTTCCTGTATGTGGCCTCCCACGACCGCGCCCGGCACTTCGCCACCACCCTCGAAGACCGCATCGACCCGCGTCACGATGACCTTCGCCTGTACCCGCTGCCCGCCAGCCCCGAATACCAGACCCTGGGCCGCTCCCATCCGCTGGCCGGCGTGCAGCTGTTCGGCAACGGCGTCACCCTCGGCCTGACCGGAGAACCCGACGCATGAACCACCCGACCCGACTCCCCCCGCGCCACGGCCCGGCCACCCGCACCCGAACGCTGCACGCCCCTCCGAGCACACCCCGGATCATCTGCAACCCCCCCTCGCAACCCACTGATTCCCGCGCTACAATCGAGCCGAGCA # Right flank : GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACGACAGCCCTGAAGACAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 14841-15223 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB906188.1 Thioalkalivibrio sp. ALE11 F620DRAFT_scaffold00025.25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 14841 36 100.0 32 .................................... AAGAGCCCGGCTGGGACGACCGCACCACCGAC 14909 36 100.0 34 .................................... CGACTCCAGCGGTTACGTAAGCCTGCGAATCCCC 14979 36 100.0 33 .................................... GGGCAATGGCATGAAGCAGGTCCAGCCCGAGCT 15048 36 100.0 35 .................................... GCGAAGGACGGGCTCCTCCCGGACGATCGGGAAGC 15119 36 100.0 33 .................................... TCGGCAATCTCGCCCAGCGCGACCCGCAGCAGT 15188 36 97.2 0 ....................G............... | ========== ====== ====== ====== ==================================== =================================== ================== 6 36 99.5 34 GTCTTAATCCCTTTGTCTTCAGGGCTGTCGTTCAAC # Left flank : CACCGCGTCACACTGCAACTGCACACTCCGCTTCGCCTACAGCACCAGGGGCACGCACTTGGGCCCGACGCCCTGGATGCCGAACGCCTGCTCATGAACCTCACGCGGCGTATCTCCCTCATCTGCGAATTCCATGGCGGCACCGCACCGAACTGGGACTACCCCACCCTCAAGGGCCTCGCACAAACTATCCGCAGCCAAAAGTCGCTGGAATGGCAATCGTGGTCACGCTACTCCTCGCGTCAGAAACAGACCATGCAGCTGTCCGGCGTTGTGGGCCAATGGACCCTCGAGGGCGACCTGCAGCCATTCAGCGCCATCCTTCAAGCCGGACAGTGGCTGCATGCCGGCAAGAACGCCAGCTTCGGTCTAGGTCAGTACAGTCTGAGCGCGGCTTCCGCATAAGCCCCTTCAAGGTTCCTACGCCCGTAGTGGTACCACAACACGCTTGCCGTTGAATCCCACGCGGAAACGCTGCAACCCATGCCCTGTCGTGGCGT # Right flank : AGGGCGGAGGTCGCGCGTTGGG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCCCTTTGTCTTCAGGGCTGTCGTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA //