Array 1 2796330-2797197 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJEY02000002.1 Providencia stuartii strain FDAARGOS_294 unitig_0_quiver_quiver_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2796330 28 100.0 32 ............................ AATTATATTTAGATGGATCTAAATCACGCCCC 2796390 28 100.0 32 ............................ ATTGTAAGCTTGGTATTTTAGCTTCGCATACT 2796450 28 100.0 32 ............................ TTCAACAGCGCATAAGCTCATTAATGGAAAAA 2796510 28 100.0 32 ............................ TCATAAGATAGTAGCTCGGCACCTTCTCTTAG 2796570 28 100.0 32 ............................ TGATTGCTTTTGTCGTTAGGATCTAGTGGGAA 2796630 28 100.0 32 ............................ AGAGGGTCGCGGGTGGTTTGTTGGCGGTATCT 2796690 28 100.0 32 ............................ TGAACAGCAAACCGCATTACGCAAAGCCAAAA 2796750 28 100.0 32 ............................ AAACGCGGTACCGATTCTAGTGATGCCACTCA 2796810 28 100.0 32 ............................ GCTAACGAAGCCATTAAAACGCGCTGCGAGTC 2796870 28 100.0 32 ............................ TTGTTCCCTATGAGCGCAACAGCAAGGCACAT 2796930 28 100.0 32 ............................ TCATCTGTTCCAGCAGTTGGGGCTTTTCTTTT 2796990 28 100.0 32 ............................ ACGATGATAAAATAAAACCCCCGAATTCGGGG 2797050 28 100.0 32 ............................ TTAAAAATTGTTATAACTTCTCGATACAGCCT 2797110 28 100.0 32 ............................ AGTCGCAATTCTCGACGATATGTCCGTACAGC 2797170 28 92.9 0 .....................C..A... | ========== ====== ====== ====== ============================ ================================ ================== 15 28 99.5 32 GTGTACTGCCGTATAGGCAGCTTAGAAA # Left flank : CAAGGGTGCAGAATAAAGTAAATGATGTTTTGAAATCATTGTTGTTGGTTAATGTTTATCAGCGACATTCTTTGTTGGAATAGACCAAATGCCCTTATGGCAAGTAGGGCAGTATTTTTGATTATTTGTAAAGTCGTCATGGCACGGTACACAAAACCAATCCATAACCTTTAAAATCGGTAAAACGGAATGAAATTACTGAGTAAGTTTATACGTTGAATGAGTTAACAATAAGTTGATTAATCAAGCGAAGGTTAAAATGTCACTGTTACTTTTGAAGAGATTGTTTTATCCGTAGCTTCTAATAAGGCTCTTTCTATCTCTTTTGATGTAAGAAGGGGGGAAGATGCGTGATAGTTATCTTATTTTACCTTCTATTTTTATTGAAATTTTATTCTGTTTAAAAACAAAGTGTTATGATACCCTCTAAAAAATAAGGTATTTTGCACAAATTAGCTATAATTTATTGTTGCACGAAGGTTTTTTCCTGATAGTTTATA # Right flank : ATGATAAATGATTATCCTGTGTGCTTTCCAATAAGCTGCACAGGCTTCTTTTTTCGCTATTTTAAGATTAATAATTAGATTATATTTATTGAGATTTCTAGTTTATTAAAACAGTGCAATTCCTTTAAACAATAAAATTAATCGGTGAGGCAGGATGAAACTGCTAAATAAAACAATCTATACGCTTATTGTGGCATTTATATCAACAGCGGCAATGGCAGAGGAGTGTATAGGTGATAGTACCTATCAAGCATGTACAAGATCGAGTACTAATGCACAAGGCGATAATATTATTGAATCGTATGATACTGACGGTAACTCATATTCAATAACATCTGGCTCAAGAGACTATGCGGATGGTTCATCTGAAGTCTTTTCAGTTGATAGTGAAGGCAATGAATACTCGATAAAAAGTTGGTGTGACAGCTCTGGATGCCATACATCTGATAGCGAAGGGAATACGTGCACAATAACAAATACTGGTGAGATGATAGGCTGTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTGTACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 4185381-4184993 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJEY02000002.1 Providencia stuartii strain FDAARGOS_294 unitig_0_quiver_quiver_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4185380 28 100.0 32 ............................ TAATGATAATTTAGTGACTAATTTACCTGCTT 4185320 28 100.0 32 ............................ CTCTAAGTCGTCAAATAAAACCAGTTTCATAC 4185260 28 100.0 32 ............................ ACCTGAGTTTCATACCCCTCACCGGTTACTGT 4185200 28 100.0 32 ............................ TAGTTATTCGTCATTGAAATACTGACAGGTGG 4185140 28 100.0 32 ............................ AAGTAGTAACCGCAGCGTTTTTCACGGAGAAC 4185080 28 100.0 32 ............................ ATTGCTATAATTCGACCGAAATCATCTGGGTA 4185020 28 89.3 0 .C........A.............A... | ========== ====== ====== ====== ============================ ================================ ================== 7 28 98.5 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TTTTATATTTATGGATGACGCTCTAGCTAAAATATAAACACTATAGAATTTCTTTTCGATAAAAATCATTAGGGTAACTCTATTTTAATGCCATTAGTGTATAGCTGATGGTTATTTTATTTTTAATGGTGATGCAGAAAGGACTAGGGGATAATTGGTCAATAGGTATGTTTAACTTTACTTATTTGGTTAACCGGGATTTTATTTTTTCTAAAAGGTAAAAAGCGACTTTCAGCTTAACTAATGATTTTATAGGGCCATCAAACTATCTGTTAGGTGTGTGTGAAATATTTATTTTAATAGTATTTAATGTATAAAAGGTTGGGTTAATTTTTTCGTCTAATCAGCAAGTGATTTTCCTTGTTTTTTACCCTTTAAATTTTTAAGGTTTTTATATCCTTTTAAAACAATAGGTTATGTTACCTGATAAAAAAGAAGGTATTTAAGGAGAAATTGTTATAATTTACTGTTGCATAAAGTTTTTTTACTGATAATTTATA # Right flank : TACGTTTTAATATAACTTAAAATTTCTACCTTATCCTTTCTAGCACACCCTCAATAAGATTTAGTGATTTTCACTTATCATGCAGAATAAAAGACTGTTAGCCTTGATGCGAAGTCAGAATAAGGCTTATGATATTTTGTACAGGGAGATTATTATAGGAATATTACCTATGGTGAGGAGGGGTGTTGATGTGTATTTTGAAAATACCAGCTCGGTGGAGGTATTTATATGAATAAGCTTTTTCGAATGTGCAACCTATTGCTATTAACTGCAAGCTTCTCAATGGTCTCTTTATCTTCCTATGCAGATCCCAATGGCGGTCATGGTCATGGGCAAGGAAAAGAGCATCAAAAAAATAAGCCTAACAAAGGTCATAATGGTAACGGAAAAGAAAAAGCAGATCATTTATCCTTAAATAAGAGTAATTCAATATCAGTATCATTAACTTACAATGAAGCAAGAGCACTCGCTTTAGACAGTGGTATTACAGGCTATCACGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 4191429-4191221 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJEY02000002.1 Providencia stuartii strain FDAARGOS_294 unitig_0_quiver_quiver_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4191428 28 100.0 32 ............................ ATAAGCGCAGCGAATGCCGGGTAATACTCGTC 4191368 28 100.0 32 ............................ TGATACTTTTAATACATCTGCAAAAGCTCCCA 4191308 28 100.0 32 ............................ ACTAACAGGATGATCGCCATAGTAGCGATTGA 4191248 28 96.4 0 ...........T................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 99.1 32 GTGTACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGATGGGTTCTTAACATTAAGAACAGATAATATAATTTCTGTCTCATCAAAAGAACCGGAAGATAGTGAGGGAGAGCCCACTGAATGGGGGATAGGTGCTTTGCATTTAGCACCAAGAAATTCAGATCAATTTAATCAGCTAAAAGAGATCCAAGGTAAAAAGGTAGATATCACTTGTGACCTATACCATGCAACTAATATTCATCACAAAACTCCGGTTCTTTGCAGTGTTGAACATTATGTTTTGGTTAAGTAATTGGCAGTATGGCATAAAACTGAAAACATAAAGTATCGTAGAAAAATGAAATAGGGCAACCTGCTATTCGTTTGTGATGAGTGACTGAAGGTACGATATTTTTATCTTTTTTTACCCTTTATTTTTTGCTCAAAAAATTTCCCTTTAAAAATAATAAGTTATATTATGTCGTAGAAATGAAGGTATTTTGCATAAAATCGTTGTAATTTATTGTTGCGCTAAGATTTTTTCCTGATAATTTATA # Right flank : TTGGCGATATCGCACTCATGGATGATTTTCTGGTGTACTCCGGATGCAACTCCCGCTATCGCTGGCAACACCAGAGAAAATTGTAAAACCAAAACAAATAGTGAAAGTAAAACAAATTATGCGGGAACCATATATTTGACATAACCTAAAACAGCAAAGTTTATCGATTATATTCGTGAAGCATTACACCATCAACATGCAAAAAGGCATCTCTTAGTATTCCCAATGATTGAAACTCATTTAACTTATGATAATACGTCGACTCTACCTGTTCACGGGTAAGGCCTGTGAGGTAATCACTTTGTTGATTTGTTTCCCAATAAATCTCACCTTTTCCTTTTATGAAGTATCCTCTTAAAAATCCAGGCCATTTATCACGCATGTTAGATATCAACAGAGAGTGGCTATCAGACTGTGTTGCTTGAAATTCATGAAAAAAATCACCTCTAAAGATAAAAATATTATTGCATTTAGTACATTGATAGATATCTCTTACATAC # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 4210424-4209915 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJEY02000002.1 Providencia stuartii strain FDAARGOS_294 unitig_0_quiver_quiver_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4210423 28 100.0 32 ............................ CATTTTGACCAGCCTTGCTTGATGCTCTGACT 4210363 28 100.0 32 ............................ TTAACCTAATTTTATTTGCTTGTTGCGCGTTA 4210303 28 100.0 32 ............................ TTAACCTAATTTTATTTGCTTGTTGCGCGTTA 4210243 28 100.0 33 ............................ CAATCATATTGCCCACACTGTCACATGATGCGT 4210182 28 100.0 32 ............................ GCTAAATTGGCAACGGATAGCATCTTTAATCC 4210122 28 100.0 32 ............................ ATTTGCTGAAACTCTCGCTTCAGTGATGAAGC 4210062 28 100.0 32 ............................ GCCATGTTGGCCATTCAGGTTCACTAATTGTG 4210002 28 100.0 32 ............................ AATTTGTATCGAGAGTTAAGCCCTGTATAAAC 4209942 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 9 28 100.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CGCAAACGACAAAGGAATTAGGTGTGACTAAGATAGAGCTATTTCTTGGTGAACAGGGATTAGAGATTCTCCCAAGAAAGTGCGTAATATGTAGGTCAGGCAGGGCGCTGTATAACGTAGCCAACTATCTTTTTATGTGAGCATTGATGGCTGTTCATTGTGTCCGCTCGGTAGCGCTGAATAAAAAGTGTGTAAGGGAGGTAATGATCAGCTACTGATAGTTATTTAAGTGAGGTTCATAAATGCTGGGTAACTCATGGGTGACACGGGCTAAAATTGATGTCACAAAATCTCACAGATAGTTCAAATTTAACGTGTCACTATTAATTTTGATGGGTATAGAAGATGCACTGTTTTCCTCTTTTTTACCCTTTATTTTTTCACTTGAAATTTATTGATTAAAAATCAATGTGTTAAGAATCACTGAAATATAGAAGGTATTTTTCATAAAATCAGATGTAATTTATTGTTGAACATGGTTTTTTTCATGATAATTTATA # Right flank : CAGATAGCAGTGCGTGGTTACGTTAAATTCCTTGCTTACTACACCGATAATGATGATGCCCTCCAGTCAGCTACAGATGTTTATTTAGACGATGTAGCACAAAAACGTGCTCACAATATCCCAGCAACCAAATCCTTTGATGCTTTCCGCTATTGGGTAGTAGAGCAATCTGGCCGTTATGAAACTTTTGAAATGCCAGACGGTAGCCTACGCCGTGTCGCTAAATCAATCAGCTTTGCAAGAATGGATGACCTAGCTTTTGGCGAACTCTACAAAGCCACACTCGATGTGCTTTGGAACTTCATTCTATTCCGTAAATTTCCCACCCAACAAGCTGCTGAAAATGCGGCGGCCCAGTTATTAGATTTTACCTAGAGGCAAGACCAATGACCAAAAAATCAAAGACCAAAGAAGAGAAACAGTGGTTATCAGATGTAGCAGAACTCGGCTGTATTTGTTGTAGAAACATGGGGTATGGGGCAACTCCTGCGGAAATCCAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 5 4284049-4283300 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJEY02000002.1 Providencia stuartii strain FDAARGOS_294 unitig_0_quiver_quiver_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4284048 28 100.0 32 ............................ TTGCTCCTTATGAGCAGCAATAATTTGAAATA 4283988 28 100.0 32 ............................ TTGGCACAGGCGCTTCCTTCGTATTTGCTGGC 4283928 28 100.0 32 ............................ ATCAACCTGTACAGCTGGGAATAAAAACGTAT 4283868 28 100.0 32 ............................ TGCGCTATCACCAGATCCCCCGTTCCTGGTGT 4283808 28 100.0 33 ............................ AAGTGGATACAAGGTATGGAAACCTGAAGACAT 4283747 28 100.0 32 ............................ AGTAACCAATGGCGATAAAGAGTAACAACCTA 4283687 28 100.0 32 ............................ TGTATTTGCATTCATACCGGCATATTTCATTG 4283627 28 100.0 32 ............................ ATCTTTATCCCACTTGCGTAGGACGACGACTT 4283567 28 100.0 32 ............................ ACGATTTGAACGTGTGATGAAACAGTATGAAT 4283507 28 96.4 32 ...........T................ TTAACTCTCTGTATGGAACCTAATTTATTTTC 4283447 28 96.4 32 ...........T................ ATATCACTAGGAAATTCGTCATATTTCCCTAG 4283387 28 96.4 32 ...........T................ CGCCCACTCTCACCGTCCAGCGAAGCCATAAG 4283327 28 96.4 0 ...........T................ | ========== ====== ====== ====== ============================ ================================= ================== 13 28 98.9 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : ATTCAAGCGGTGCCAGAGCATGCCACGCCAATTAGTTATGTGCGTCAACATGTAAAAGGTGCAAAGCGTCTTGAACTGGATAGGTATAAGAAAGCTCAATTGTATTCAGTAAAATTAGGGCAGCCTATTGAGGTCTGTTTAAGCGCAATAAAAGAGCCTCAAACGCGTAGTCGTTTACCTTTTATTTGGATGGAAAGTCAGCAAACAAAGTCTAAAACAGAAGGCGATGGGCATCGTCCATTTCCACTCTTTATTCGGTGTGTTGCTGCGAAGGAAGCAAAGGCAGGCACGTTTAATTGTTATGGGTTAAGTCAGTCTATGGGGAAAGGCGAAGAGGTTGCCACCGTTCCACATTTTTGACCTTTTTTACCCTTGTTTTTTTGCTCTTTAAAAATTAAACATAAAAACAATAAGTTGCAGCAGACTGTAAAAAAGAAGGTATTTTGATAAAAATAGCTTTAACTGTTTGTTGTGACTTATTTTTTATTTGATACGCTATA # Right flank : AATGAAACATCTGCTTGATTTTATAATATTTTTCAAGGTGACCATTTTGGCTTGTTCTATAAAATACAAAGGTCGCTTCTAATTCTTTATTTTCGTCCAAAGTCACCGAGAATAAAGGCGAGGATTTATCAATCTGCTTTGTAAATACAACTGGTTTATATGAGGCACTTTGCTCACGAAAAGAACCATATTAGTTAGCCCCAATCACTTAGACTTCATCTTTATAACCAATTTGATAACGATTATCAATTGAGTTCTGAGATAAGCATCCTACTGAAATAAAACAAATATTTCCTTAGTGCGAGTTTGAAGTTGAGTTAAGGCTTCAAGTATATCATCATGATTGAGTATATGTTGTGGCTTCTTTTCTGTCGGTTAGATGGCCCATTATCCGGAGGAACGCCTTGAGAACGCGTATTACCATTTATCCTGAACCAATTTTATCAATTCTAATGTGCGGCCTAAGCGTTTATTATCAACGATAGCCCTTGGTCAACCTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 6 4297772-4297264 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJEY02000002.1 Providencia stuartii strain FDAARGOS_294 unitig_0_quiver_quiver_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4297771 28 100.0 32 ............................ ATCTTCCCGAATCAAGGTGGTGACTTCGTTTT 4297711 28 100.0 32 ............................ ACCTCAATCGATAGCAAAACCAAATCGGCTGG 4297651 28 100.0 32 ............................ AAAGTAACGTAGTGATACGTGATGATGGTTGC 4297591 28 100.0 32 ............................ AGCATTCGAACACGACCTACCACGCTTAACAA 4297531 28 100.0 32 ............................ ACACGAGATGCAAGGCTCATCCTTGTCTCTTT 4297471 28 100.0 32 ............................ ATAACCAAGAAGTCATCAGAATCAATTGACAT 4297411 28 100.0 32 ............................ AGTAGCAACAACAGCACGGAATCAGGCAATGT 4297351 28 100.0 32 ............................ GATTCATCGTTAGTCTCGATGTGATCTGCAAA 4297291 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 9 28 100.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AAATCAGCGCTAGATAAAATCTCAAATATTGAGTCGAAGCAGGGGTTGCAGCTACAAGAAATTGACCAATTAAACTTTCTAGCAGATACAAGAAGTATTCAAAATAGTCAGCGCATAAGTGAGTTGTTGGATACAAATTGGACTGGAGTCACAACAGACTATTATAAAGAAATGGCTATGTTCCAAGCATCGCAAGATATTTTTAAAGATTTAAATAGCATGTCATTATTTGGTGGTCGTTAAGACGTGTGCCAGTCTCAACTCATTTGAGGCTGGCGCAATTACCGTATCGTTATTTTTCCCTACAATTATTTTCTTTTCTCTTATCCTATATTGCATTTCTCTTAAGATGATTTACTCTTTATTTTACCCTTTGTTTTTGCTCTTTAAAAAATTAGCCAATAAAACAATAAGTTACTAAGTGTCATAAAAAAGAAGGTATTTTTCTAAAAAATAGGCTAACGAATTGTTATTTAGGGATTTTGTTTGGTAAGCTAATT # Right flank : TGAACGTTTCCAAAACAAACGCATTAAGCAAATTGATGAAGAAAGTAAGTCAATTTACTACGAAAACTACGAACCCTGCGACGTTCCTGATTCACGTTGGATTGATATGCTTATCGAAATGCCAAGTAATTTAATCTACAATCAGCGATAAGCAGAAGCAGAGCGATTAGCAAAAGAAGCAGCAAAGAGAGATGCTAAGCTTGAAGCTGCATCACAGATAGAGGACAATAAAAATTAATGCGCCATCTCGAGTAGTTGGCGCATGTGTATATTTATTCTTTAGGGTTTGAGCCAAATCGGTTGTTACCTGGGGTTCCATCAAGGCATGTAAACACAAAAATGACAAGACCACCAAAAGGTATAAATGTGAGCAAATACCACCAACCTGACTTATCTATGTCATGTAAGCGCCTAACAGTTACTGCAAGGCTAGGTATTAAAATAGCTACGCAATAAATCATCAGGAGGACTAGAGCTACGATCCCCAAACCATTTATATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //