Array 1 674881-676236 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR822027.1 Streptococcus thermophilus isolate STH_CIRM_998 chromosome STHERMO, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 674881 36 100.0 30 .................................... TAATACCTAGGTAACTCATATAATCATCTA 674947 36 100.0 30 .................................... GACAATGTCCAACCAGTGTCCAACAGAGAT 675013 36 100.0 30 .................................... TCATTCGGCAGACAATAAATATCATGACCT 675079 36 100.0 30 .................................... GACCTTGACACAAAATCCAGTAAATATTTT 675145 36 100.0 30 .................................... TGGCATACGGAAAAAGTAGATACAACTCAT 675211 36 100.0 30 .................................... TCTAACGGTCAGCACATCTCCAACGCGCTT 675277 36 100.0 30 .................................... TTCATTACTGAAAAACCTATAAATTTTTTA 675343 36 100.0 30 .................................... AAAAAAACGAAAAGAGGAAACGCGAGAGAG 675409 36 100.0 30 .................................... TACACAATGCCAATCGTGTGTTATTACCTT 675475 36 100.0 30 .................................... GGTATCACTTGGCGTTAATGAAATATCTGG 675541 36 100.0 30 .................................... CATGCATCCGACATCCCAGATTCAACTAAG 675607 36 100.0 30 .................................... AGTCGTGCCTTCATAACAGTCTAATTCTGT 675673 36 100.0 30 .................................... ACTCTTGAACAGCTACCAGACGAAGACTTA 675739 36 100.0 30 .................................... TACATAACTGAAGACGAATATCCAAATAAT 675805 36 100.0 30 .................................... AAAGCCTATAACGACTTAAATAACAAAGCT 675871 36 100.0 30 .................................... TTAGGGCTAACGCTTCCGATGTCTCTTTCT 675937 36 100.0 30 .................................... AAGACCGCTGTACTGGTTGGTATTCGTACC 676003 36 100.0 30 .................................... AAGATTTCAGTCTTGAAGCTGAGTACATTA 676069 36 100.0 30 .................................... AGCTACATACTATGTTAAATTAAGACAAGC 676135 36 100.0 30 .................................... TCCGAGCTGACCACGTTAGATCAGTCTTTG 676201 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 99.7 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGCTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGTTGTTTCATTTTAGTTACCGTATAAGATATTCACAAAAATCTGATGAAAAACTTTTACAGAAATTTTTAGAAAGTAAGGATTGACAAGAACAGTTATTGATTTTATAATCACTATGTGGGTATGAAAATCTCAAAAATCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCGGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTTGGTCTGTGGGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTACCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGATAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 929688-930451 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR822027.1 Streptococcus thermophilus isolate STH_CIRM_998 chromosome STHERMO, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 929688 36 100.0 36 .................................... CAACATAAGCTTCAATTTCATCACGTGATGGCATAA 929760 36 100.0 39 .................................... TGATAACGATGATTTGGTTGATAAGCCACCGTCAACATG 929835 36 100.0 39 .................................... TCTCCTGATGTCGATTTAAGAACATTAGGTGTATTAACA 929910 36 100.0 37 .................................... TCTTATAATGATATGTTTCGAAGAAATAAAAAAGAGC 929983 36 100.0 36 .................................... ACAAACTTGGTTCATGGGTACCAAAAGTACCAGAAG 930055 36 100.0 35 .................................... GTTTTCGATAACCCTTAGGACGTGTCAAAACTACA 930126 36 100.0 38 .................................... GCGTGCTTCGTATTTGCGTTCATTTTCTTCCCATGATG 930200 36 100.0 37 .................................... AAACTAGTTTTCATCAACTATGAAGGTTTCAAGTCCG 930273 36 100.0 35 .................................... CAATCCACAATCTAATGCGATACCCACGGTAATTA 930344 36 100.0 36 .................................... TGTCCGCTGGATATTTATCGCTTTAGTAATTTTCAT 930416 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 11 36 100.0 38 GATATAAACCTAATTACCTCGAGAGGGGACGGAAAC # Left flank : AGAGTTTGATTAGGGCTTTTAGAGAACTTGACCCTAGTCTCTATGAGACAAGTTACACAGGAGGGCATTAATGGGACTTTACTTTAACCTCAGCGAAGAAGAGCGTGAGTTTGCCAAACAAAAAACCATGTTTTGTCTGATTATTTATGATATCCGAAGTAACAAACGTAGACTTAAACTCTCGAAATTACTTGAGGGTTATGGCGTGAGGGTGCAAAAATCCTGTTTCGAGGTCGACCTGTCAAGAAATGATTATCAGTCTCTCCTTAAGGATATTGAGGGTTTCTACAAGGCTGATGAAGAAGACAGCATAATAGTGTATGTGACAACCAAAGAAGAGGTGACTAGTTTTAGTCCCTACCATAGTGCTGAAAAATTAGATGACATTCTCTTCTTCTAAGCCTTTATAGACCTTTAATCATATGGTACAATATAGATAGTGTTTCCAGTAGGTCCTACATCTTGTGCCTCTAGCAACTGCCTAGAGCATAAGATATGGG # Right flank : CTGATGATGCAAAAAGAAGTAGCGGACCGTATCTCAGCAGAACCAAATACCAAAGCTTACGGTTCACTTTCAATTGCGGTGCAATACTACATGACAGCAAAAATTGCTTTCATCGTGCCACGTACAGTCTTTGTGCCAGCGCCGAACGTTGATTCAGCCATCCTCAAGATGACCCGCCGTGAACAACCACTTGTTCAAGTTAAAGACGAAGATTTCTTCTTCCGCATTGCTAAAATCAGTTTTGTTCACCGTCGTAAAACCCTTTGGAACAACTTGACAAGTCACTTCGGGAAGTCAGAAGAGGTCAAGACCAAATTAGAAAAGGCTCTGGAAGCAGCTGGTATCAAGCCGTCCATTCGTGGAGAAGCTTTATCTATTGCCGATTTTGCAAGATTGGCGGATGCCTTAAAAGAAGTCGGATTATAATGAAGAGACCCCAGCCATTTATTGTGGTTGGGGTTTAAAAATCTTTTAATAGCTTGTCTTTGTAATAATTAAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAAACCTAATTACCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 3 1437829-1436207 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR822027.1 Streptococcus thermophilus isolate STH_CIRM_998 chromosome STHERMO, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1437828 36 100.0 30 .................................... AAAGGTGGAAATTACATTTCACAAAAAGAG 1437762 36 100.0 30 .................................... GGTTAAAGAATATAACTATCTTGTTAGTCA 1437696 36 100.0 31 .................................... CGTTCTCTTTGTTTTTTCTCATACTAACTCT 1437629 36 100.0 31 .................................... CCTAAAAAACGGTGAAAATCGTTCTCGACAA 1437562 36 100.0 30 .................................... TTTCAGAAAGTGAAGCCTTGTGGCTAACGC 1437496 36 100.0 30 .................................... TTTAAAGCGTCCGAATGTTAAGCCAAAATA 1437430 36 100.0 30 .................................... AGTGAAATTTAACGAAGTAATGCATAAAGT 1437364 36 100.0 30 .................................... TTGGCACTACACCTCAAACAGTGAGTGCAT 1437298 36 100.0 30 .................................... CCGTTTCAAAAAAGGAGTTGCTGAGCGATA 1437232 36 100.0 30 .................................... CGTAGAGAAATAGAATAGGTGGCGCGTGTA 1437166 36 100.0 30 .................................... GATGTAGCGCTAGTTTGCGGGCAATTGGAT 1437100 36 100.0 30 .................................... CGTAGAGAAATAGAATAGGTGGCGCGTGTA 1437034 36 100.0 30 .................................... GATGTAGCGCTAGTTTGCGGGCAATTGGAT 1436968 36 100.0 30 .................................... ATCAGTAATATCAAGGGTTTTAGAACCCTA 1436902 36 100.0 30 .................................... CTTACTTGCACAAGCATGTTTCAATCTTAT 1436836 36 100.0 30 .................................... CCGCCGCTTGGAGTAGTAGCTTGCAAGGTT 1436770 36 100.0 30 .................................... GGTGGTGCTACACATACACTACGCTACGCT 1436704 36 100.0 30 .................................... GGATGATGCGATTAACGAAATGCACAGATT 1436638 36 100.0 30 .................................... GTTTCCACTAAAATGCGTGTCTGACATGTC 1436572 36 100.0 30 .................................... TAGAGGTAATGACGGACTGCCTGGCAAGGA 1436506 36 100.0 30 .................................... GTTTCCACTAAAATGCGTGTCTGACATGTC 1436440 36 100.0 30 .................................... TAGAGGTAATGACGGACTGCCTGGCAAGGA 1436374 36 100.0 30 .................................... TAACGCATTGACTAACTGGGTGACAGCTCT 1436308 36 100.0 30 .................................... ATATCCTTGTGTTCTTTCATGGTTGTGTAA 1436242 36 97.2 0 .............................T...... | ========== ====== ====== ====== ==================================== =============================== ================== 25 36 99.9 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTGGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAAATGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : TTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAAGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTACTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGATCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //