Array 1 1-259 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV815315.1 Rothia sp. HMSC036D11 Scaffold234, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =============================================== ================== 1 33 100.0 47 ................................. GCGAGGCCCACCCGGGCGTGGAGGAGGAGTCCGCCCAGGTGGGTGTC 81 33 100.0 41 ................................. AACGGTGCGGGCTGGCGTATCCGGGCGACCAAGTGTGCGTC 155 33 100.0 39 ................................. ACAATGATGGTGGCTGACATGAGTAAACCACTATAGGTC 227 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =============================================== ================== 4 33 100.0 43 TCACCTGTGAGAACAGGTGACTTTCATTGAGGG # Left flank : | # Right flank : GCCCGCGGCGTGTACGTTGTACCTTGCTGTTCATATTCGTGTCTCACCTGTGAGAACAGGTGACTTTCATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCACCTGTGAGAACAGGTGACTTTCATTGAGGGGGCGGTACGACGGCTGATGCTATCGACGCTATATCCGGTCTCACCTGTGAGAACAGGTGACTTTCGCTAAAGAGAGAAGAGGCCCCGTCTCATCACCCATGAGACGGGGCATCTTTGCTAGAAAAGCAGGTGCTAGTCGATAGCGTCGAAATCGACTACATCAAACCCGAGGATTCCTTCGGATGCGCTCACCACCGGCTTATCGCGCACCACGTGCCGGTTCGCAATCCAGTTGCGGAACGACTCTTCATCCTGCCAGTGAGTCAGCGCAAAATATTCGGTACCGCCACTGGTG # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCACCTGTGAGAACAGGTGACTTTCATTGAGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 369153-368989 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV815315.1 Rothia sp. HMSC036D11 Scaffold234, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 369152 36 100.0 28 .................................... GATAGTTGGCACCCCGCATATCGGATAC 369088 36 100.0 28 .................................... GGTTTTTGAGGGTGCCGTCCGTACATTT 369024 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 3 36 100.0 28 TAAGTCTAGCAAGGATAGTTAGTGAAGATTCCCAAC # Left flank : GTCTAGCAAGGATAGTTAGTGAAGATTCCCAACCCAAGGATTTCAACCCATGATGCCCAAGTAAGTCTAGCAAGGATAGTTAGTGAAGATTCCCAACCGGGTCTATGGCCTATGTCAACCGTGACTAAGTCTAGCAAGGATAGTTAGTGAAGATTCCCAACCGAAGACCTCGACACCCGCGCCCGCGCCTAAGTCTAGCAAGGATAGTTAGTGAAGATTCCCAACAGACCCGTCGCCTACCACAGTGACATGCTAAGTCTAGCAAGGATAGTTAGTGAAGATTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTAGCAAGGATAGTTAGTGAAGATTCCCAACTATCACCGGCGGGCTTGCTCAGAAACA # Right flank : CGAGTTGCCGTATGAACAGGTATCCCCTTAAGTCTAGCAAGGATAGTTAGTGAAGATTCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTAGCAAGGATAGTTAGTGAAGATTCCCAACTGATGTTCCTGCCCTTGATGCAGGTGGCTAAGTCTAGCAAGGATAGTTAGTGAAGATTCCCAACTAAAGAAGGGCGCTTCGTAGGGGTGGGATAAGTCTAGCAAGGATAGTTAGTGAAGATTCCCAACTAGCAACATAGCGTCGCTTACCCGAATATAAGTCTAGCAAGGATAGTTAGTGAAGATTCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCTAGCAAGGATAGTTA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TAAGTCTAGCAAGGATAGTTAGTGAAGATTCCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 369313-369597 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV815315.1 Rothia sp. HMSC036D11 Scaffold234, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 369313 29 100.0 35 ............................. TTAGCATGTCACTGTGGTAGGCGACGGGTCTGTTG 369377 29 100.0 35 ............................. TTAGGCGCGGGCGCGGGTGTCGAGGTCTTCGGTTG 369441 29 100.0 35 ............................. TTAGTCACGGTTGACATAGGCCATAGACCCGGTTG 369505 29 100.0 35 ............................. TTACTTGGGCATCATGGGTTGAAATCCTTGGGTTG 369569 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =================================== ================== 5 29 100.0 35 GGAATCTTCACTAACTATCCTTGCTAGAC # Left flank : ACTATCCTTGCTAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAATCTTCACTAACTATCCTTGCTAGACTTAAGGGGATACCTGTTCATACGGCAACTCGGTTGGGAATCTTCACTAACTATCCTTGCTAGACTTAAAATGTACGGACGGCACCCTCAAAAACCGTTGGGAATCTTCACTAACTATCCTTGCTAGACTTAGTATCCGATATGCGGGGTGCCAACTATCGTTGGGAATCTTCACTAACTATCCTTGCTAGACTTACTGTTTCTGAGCAAGCCCGCCGGTGATAGTTGGGAATCTTCACTAACTATCCTTGCTAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : | # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAATCTTCACTAACTATCCTTGCTAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 59-287 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV815316.1 Rothia sp. HMSC036D11 Scaffold242, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================== ================== 59 37 100.0 27 ..................................... GGCGGCGGTAGCACCCCCGATCGCGCA 123 37 97.3 27 ....................................G GGAACTCGCACTGATACCTATCTATCG 187 37 100.0 27 ..................................... CTTCTTGACGTTGTAGGTACCGGTATG 251 37 89.2 0 .................................NNNN | ========== ====== ====== ====== ===================================== =========================== ================== 4 37 96.6 27 GTTGGGAATCTTCACTAACTATCCTTGCTAGACTTAT # Left flank : AATCTTCACTAACTATCCTTGCTAGACTTAGGCGGACTTCTAGCCATTGCGCTGTTTTG # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAATCTTCACTAACTATCCTTGCTAGACTTAATATCTAGAATATACAGCCTAGTCAGGGTATAGTTTAGGCTGGTTTTTCGATCGAAAAACCAGCCTAACACCCAGTATTTTTCTCTGTGATTACCATCTTCAACGGAAAAACTGAGATCATCTTGCAAGTTCAGGAGGGGTGGGTGAACAAAAATCTCTTAGATTTTTGTTCACCCACCCCTCCTGAATTATCAGAAAACGTCAAGTGCATCTGGGGGCTCTTCGATATTCTTCCGCTGTGGCCCCAGATAGCGAATTGTTGCTACCCATTGAGAATCTGTAGCCTTCATAATACGTACTGCCCCTCCAGGCGGTACCTGAATCTGAAGCTGGAATAGATCTCGCCCAGTTGCATTACCATTTATATAAT # Questionable array : NO Score: 2.53 # Score Detail : 1:0, 2:0, 3:0, 4:0.83, 5:0, 6:0.25, 7:-0.15, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGGAATCTTCACTAACTATCCTTGCTAGACTTAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 1 1-245 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV815300.1 Rothia sp. HMSC036D11 Scaffold132, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================== ================== 1 28 100.0 44 ............................ GAGACCTTCACGCCGGGCAACCGTGTGCAGGCAACATTCGGCCC 73 28 100.0 43 ............................ GAGACCGGCGTTTCACATCACCATGCGGGGCGCTCTGTTCCCC 144 28 100.0 46 ............................ GAGACTCTTCTTCGTAAATCGGGGTCGTAAATGTCACCATTTCCCC 218 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ============================================== ================== 4 28 100.0 45 TCAATGAAAGTCACCTGTTCTCACAGGT # Left flank : | # Right flank : TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGAAAGTCACCTGTTCTCACAGGTGAGACGTTATCAGCCGTGATGTTCAGTCCGATGCGGAGGACCCTCAATGAAAGTCACCTGTTCTCACAGGTGAGACGATTCTGCAACTAACATGGGCTAAAGGCTTCGAGTTGTGCCCTCAATGAAAGTCACCTGTTCTCACAGGTGAGACCGGCGTTTCACATCACCATGCGGGGCGCTCTGTTCCCCTCAATGAAAGTCACCTGTTCTCACAGGTGAGACCCCTATATGGCGGATTGAGCTAGACGCGAGCGCGTCCCCTCAATGAAAGTCACCTGTTCTCACAGGTGAGACTTGCCATTTGCCCATGCAGCGGCAGAATGATCCACACCCTCAATGAAAGTCACCTGTTCTCACAGGTGANNNNNNNNNN # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAATGAAAGTCACCTGTTCTCACAGGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 412-737 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV815300.1 Rothia sp. HMSC036D11 Scaffold132, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 412 36 100.0 39 .................................... GATTCTGCAACTAACATGGGCTAAAGGCTTCGAGTTGTG 487 36 100.0 35 .................................... CGGCGTTTCACATCACCATGCGGGGCGCTCTGTTC 558 36 100.0 36 .................................... CCCTATATGGCGGATTGAGCTAGACGCGAGCGCGTC 630 36 100.0 36 .................................... TTGCCATTTGCCCATGCAGCGGCAGAATGATCCACA 702 36 91.7 0 .................................NNN | ========== ====== ====== ====== ==================================== ======================================= ================== 5 36 98.3 37 CCCTCAATGAAAGTCACCTGTTCTCACAGGTGAGAC # Left flank : TCAATGAAAGTCACCTGTTCTCACAGGTGAGACCTTCACGCCGGGCAACCGTGTGCAGGCAACATTCGGCCCTCAATGAAAGTCACCTGTTCTCACAGGTGAGACCGGCGTTTCACATCACCATGCGGGGCGCTCTGTTCCCCTCAATGAAAGTCACCTGTTCTCACAGGTGAGACTCTTCTTCGTAAATCGGGGTCGTAAATGTCACCATTTCCCCTCAATGAAAGTCACCTGTTCTCACAGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGAAAGTCACCTGTTCTCACAGGTGAGACGTTATCAGCCGTGATGTTCAGTCCGATGCGGAGGAC # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATGAAAGTCACCTGTTCTCACAGGTGAGACGCTACCCACCCGGCGCGAGGCTTGGAGGTAACCACGGCCCTCAATGAAAGTCACCTGTTCTCACAGGTGAGACTCTGCTGCCAATCGGAGCGGGTCTCGCTGAGACTCCCTCAATGAAAGTCACCTGTTCTCACAGGTGAGACAGCCCCTCAAAAGTCCCCAGTGCTATACCGGTTTCTCAAGAGACTACGCGAGCGCGAGGGGTAGACCACTGATTTTTAGTCTACAATACCCACAAATATGACCACAAAAATTGCTCTGACCTGAGACTACACTACCGCGAGCGAAACCCGGGATTTTCGGTGAGTGCTAGGTACTCGCATCACGGCGAATATGCTAGATGATGAGCACGTCATTATCTGTGGTACCA # Questionable array : NO Score: 2.97 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTCAATGAAAGTCACCTGTTCTCACAGGTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.50,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 1010-835 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV815300.1 Rothia sp. HMSC036D11 Scaffold132, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ========================================= ================== 1009 32 100.0 38 ................................ AGGGAGTCTCAGCGAGACCCGCTCCGATTGGCAGCAGA 939 32 100.0 41 ................................ AGGGCCGTGGTTACCTCCAAGCCTCGCGCCGGGTGGGTAGC 866 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ========================================= ================== 3 32 100.0 40 GTCTCACCTGTGAGAACAGGTGACTTTCATTG # Left flank : TACGATGAGGCGTGACGACACGCGACGTACTCTTATCGCCTACGACATTCCGGATGACAAACGCCGCGGACGAATTGCGAAGCTGCTCTTATCCTATGGTGACCGGATACAGTACAGCGTGTTTATCGTTGATGTAATTCCCTCTAAGCTTCTTCGTCTGAAGGATGAAATTAGGCAGCAGGTAGAGGCTAGCGAAGATTCAGTACTTTTTTGTGATCTTGGTAGACTATCGGAACTTGGTGAAAAACGCTTCAGCTATGTGGGGCAACCGCGTGGTACCACAGATAATGACGTGCTCATCATCTAGCATATTCGCCGTGATGCGAGTACCTAGCACTCACCGAAAATCCCGGGTTTCGCTCGCGGTAGTGTAGTCTCAGGTCAGAGCAATTTTTGTGGTCATATTTGTGGGTATTGTAGACTAAAAATCAGTGGTCTACCCCTCGCGCTCGCGTAGTCTCTTGAGAAACCGGTATAGCACTGGGGACTTTTGAGGGGCT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCACCTGTGAGAACAGGTGACTTTCATTGAGGGTGTGGATCATTCTGCCGCTGCATGGGCAAATGGCAAGTCTCACCTGTGAGAACAGGTGACTTTCATTGAGGGGACGCGCTCGCGTCTAGCTCAATCCGCCATATAGGGGTCTCACCTGTGAGAACAGGTGACTTTCATTGAGGGGAACAGAGCGCCCCGCATGGTGATGTGAAACGCCGGTCTCACCTGTGAGAACAGGTGACTTTCATTGAGGGCACAACTCGAAGCCTTTAGCCCATGTTAGTTGCAGAATCGTCTCACCTGTGAGAACAGGTGACTTTCATTGAGGGTCCTCCGCATCGGACTGAACATCACGGCTGATAACGTCTCACCTGTGAGAACAGGTGACTTTCATTNNNNNNNNNNN # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACCTGTGAGAACAGGTGACTTTCATTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.50,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 4 10308-9989 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV815300.1 Rothia sp. HMSC036D11 Scaffold132, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ================================================= ================== 10307 26 100.0 48 .......................... GAAGCTATTTCCGACTCCAACAACATCACCGGTAACTTGTCTCACCCA 10233 26 100.0 44 .......................... GAAGCTATGAACGCCGTGTACACCAAGACCGGCCGTCTCACCCA 10163 26 100.0 48 .......................... CATGCAGTGCGTTCACGTTTCGCGCACCACGTCACGTCGTCTCACCCA 10089 26 96.2 49 ...G...................... ACGTTGAGCATGCGGGTCTTCACGTCATGGCGGGCCCGTGCCTCACCTG 10014 26 76.9 0 ...G..CA..............TT.A | ========== ====== ====== ====== ========================== ================================================= ================== 5 26 94.6 48 TGAAAATGGGTGACTTTCATTGAGGG # Left flank : TACTGGTTCGAGGGTAACTTCGAGTCTTACGAGAAAAACAAGATCGAACGTCTGGGACCGGAAGCTGCGAAGCCGCACCGCGTGGTGCACCGCAAGCTTACTCGCTAAGTTAAGAAAGATAAATGCCCCGCTTGTCCGCTATTTCTGCCGGATGTGCGGGGTATTTTATTTTGGATTGTTTCGAGGAACGCGAGCACCTTGTACTTACCGAAAATCCTGGGTTTCGCTCGCGTGAGTGAAACACCTTGTCAGAGTCGTTTTGTGTCTGAACGATTGCCTCCGATAGACTGAATAATACGAGCGGTTGTCCCTACGCTCGCGAAAGTACCTGAGAGACCAGGAATTTACTGGATATTTTTTAGGTGCTGTCTCACCCATGAAAATGGGTGACTTTCATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TACCTAAGATGGTTCCGAGGTGCTCAGAACCCAGGCTTAACACGAGAAATATGTAGGAAGAGAGATATGACGAAACATAAAGCATAGCTTCATAAATACTGATACTATAAAAAGTACACAGAGCTGTTGGTTTACATTTGAAACTCACCTCAAAACCCACTTCTCTCAAAAGCGTTTCGTGCGCTGCGTATAAAGCCTTTCAGACTTTATCGTAAACACAAGCAATATAAGTAGAACAATAGCGTTCTACATTAGGTTAGGAGAATTCCGTGTCAATTTCGGATAAAGCTAATATCAGCTTCGAAGATTTGAAGGAAGCATGTGCCGCTGGTGGTGCCTCAACCTTGGTTTCGGTAACAGAGCTTAAACCTGCTGCCGGAGAACACGCATCAGTTGCTCCAGCTAAATTTGTTGAGGGTTCCAAGTCAGTCTTCGCTTTTGAAACCCGATATATTGATGGTGAAGCTGCCCGGGTAGTGCTCATTGATAGCAAACAATCT # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:-0.02, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGAAAATGGGTGACTTTCATTGAGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.69%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //