Array 1 515-1580 **** Predicted by CRISPRDetect 2.4 *** >NZ_AETJ01000158.1 Salmonella enterica subsp. enterica serovar Montevideo str. 556152 isolate FDA_2010_219_Red Pepper-1 SEEM6152_85, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 515 29 100.0 32 ............................. GGTCAGGCGATCATATTCGCGTGGATTGACGA 576 29 100.0 32 ............................. GTTCAGGTTTCGCGTCATCTGACGTTGGTAAT 637 29 100.0 32 ............................. TGTCCGCAATTGAGCGTTTCTCGGCTGATATC 698 29 100.0 32 ............................. ATCCGAGTAGCTCAACTGGGGGATATCCCCAA 759 29 100.0 32 ............................. GCGGTGCGGCAGGCGTTCCATGCCTCCATAGC 820 29 100.0 32 ............................. TTCACCTTTCCCCACAATGTCAGAGGTTATTT 881 29 100.0 32 ............................. ACCACTGTCCGCAATCTGTCGGCGAACTACCG 942 29 100.0 32 ............................. GAGATCCCCCAGCGTGAATATCTGGGAGTGTC 1003 29 100.0 33 ............................. GCTGAATTGCTAAATAAAGCGGCCTGCGCTGCC 1065 29 100.0 32 ............................. ACGATTTATGAAATCCACCCGGTAAAAATGAA 1126 29 100.0 32 ............................. ATGATCCGTGAGGGGGTGGCAACGCACGCGTT 1187 29 100.0 32 ............................. GGACAGGTAACAGCGTGCTTGGTTCTGGTAAC 1248 29 100.0 32 ............................. AGTGAGTATCAACTCAACCTTATTGAAGATAT 1309 29 100.0 32 ............................. AAATAATTGCGCAGTTTTAAATGCCTGAATAT 1370 29 100.0 32 ............................. TCACAGTCACCGGTGATGACGGCGTCGTCGCT 1431 29 100.0 32 ............................. CGCAAATGAGCCAGGCGGACAGGCATTTTAAT 1492 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 1553 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGTAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCATAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAGTGCTTTATAAAGAACGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGTTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 17717-18055 **** Predicted by CRISPRDetect 2.4 *** >NZ_AETJ01000158.1 Salmonella enterica subsp. enterica serovar Montevideo str. 556152 isolate FDA_2010_219_Red Pepper-1 SEEM6152_85, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 17717 29 100.0 32 ............................. GTCGCGGTGTGAGCGGAAAGCCTGGCGAACAG 17778 29 100.0 32 ............................. CGAGCTCGTCAGGGAGGGAAAGGTTATCCGGG 17839 29 100.0 32 ............................. GTAGGTAGCGCCCAATGGATGTTGGGGGAAAT 17900 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 17961 29 100.0 34 ............................. GAAACGAACATTAACTAAAAACCGGTTTAAGCGC 18024 29 100.0 0 ............................. | A,G,G [18026,18034,18040] ========== ====== ====== ====== ============================= ================================== ================== 6 29 100.0 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGTGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTCCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GAGTTGTTTTTCTTGCGGAGCAGGACGGCGTAGTGTTCCCCGCGCCAGCGGGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 82631-81747 **** Predicted by CRISPRDetect 2.4 *** >NZ_AETJ01000146.1 Salmonella enterica subsp. enterica serovar Montevideo str. 556152 isolate FDA_2010_219_Red Pepper-1 SEEM6152_74, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 82630 29 100.0 32 ............................. CACTCTGCGTAATGGCAAATTCCAATTCTTTC 82569 29 100.0 32 ............................. TTGACACAATAGCGAAATCAATTACTGAAAAG 82508 29 100.0 32 ............................. GACGCCAATTATACATTGGCTCTATATGAATT 82447 29 100.0 32 ............................. CTCCCGGCCGAGGCCGTGACGGTGAAACAGAA 82386 29 100.0 32 ............................. GTACAGAAAAAAGAGGCGTCGCATGTGGCGAT 82325 29 100.0 32 ............................. GGCCTCACAGCGGCGCCCGCTGGTCACGACCA 82264 29 100.0 32 ............................. CCCGCCGTCTGTCACACCTGTTATGTAATTGT 82203 29 100.0 32 ............................. TTATCCACCAGCAATCAGGGGCCGGATATACA 82142 29 100.0 32 ............................. CAAACAGTGCATAATTCGCAAAATTTGCGCTA 82081 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 82020 29 100.0 32 ............................. ACGAGCACTGCAACGGCGAACTGGCAATGGCA 81959 29 100.0 32 ............................. GAATTATTTAGTTGATCTGAAGAATTCAGGAA 81898 29 100.0 32 ............................. AACAGTGCAACCAGAAAGTATTAAAAAACCAA 81837 29 100.0 32 ............................. CAAAAGGCCGACGGTGTGTACACCTCTAAAAA 81776 29 93.1 0 A...........T................ | A [81749] ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGCGGAC # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //