Array 1 46955-49050 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDDZ01000014.1 Enterococcus cecorum strain D-104 104-D_contig_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 46955 32 100.0 33 ................................ AACGAACTCTTTAATAGTAGATATAGAACGTTT 47020 32 100.0 36 ................................ AAAGCAAGTTCCTTAATCAGAGTATTACGCAAGATT 47088 32 100.0 33 ................................ TTGTATGGAGGAAAATTAAATGATTAATTTACA 47153 32 100.0 34 ................................ AACTTTTGGCGATGAAAGATAAAGAATGTCTCCA 47219 32 100.0 35 ................................ TATTTTTCCGGTCGGTACTGCGTCGAAATAGCGAT 47286 32 100.0 34 ................................ AGCGTTTTAGCTAAGTAAATACTATCACAAAAGA 47352 32 100.0 35 ................................ ACGGCTAGCAATTTCTGTTTCAGTATCAAACGCAT 47419 32 100.0 36 ................................ CATAACAAGCCTACCTTCTCGATAAGCTTGCTCCGC 47487 32 100.0 34 ................................ ATACTAGAATGAAGGTATTCTCTAATCGTATTAG 47553 32 100.0 34 ................................ CAAACATCCTTTCTCCTGCTTACCCGGCAGTTCG 47619 32 100.0 34 ................................ TTGACTTTCTCAGACGATGAATGAGAAGTACTAA 47685 32 100.0 34 ................................ TATTAACATCAAGTGCTTTTAACATGTATTACCT 47751 32 100.0 34 ................................ GCTAAAAATTGTTGGATTCGACAATGTAATTTTT 47817 32 100.0 34 ................................ TCCCCAAGCTTTCCACGCTACAGCACCAATTGTA 47883 32 100.0 35 ................................ TGAGAATCCTGAATTTACTACTTATTTTAGATTTA 47950 32 100.0 35 ................................ ATCATATCAGCATCAAAATATAATCGATAGCCATT 48017 32 100.0 33 ................................ ATAATAAAATTCCTCCTATTAAATAAAATTATT 48082 32 100.0 35 ................................ CCTACTGCAAGACATACGAAACATGGATAGTGATC 48149 32 96.9 34 ............G................... AAGTTGGTAGCGTTGATGACTACCGTTTGACTAA 48215 32 100.0 35 ................................ TCACTCATCGGTTACCACCTCGATGTCAGCAAAGT 48282 32 100.0 35 ................................ AAGATCAGGGCAAAATTGTGACTTACGATATTCGC 48349 32 100.0 37 ................................ CTTGATGCGGCTATGATGAAACGCTGCGACCATCACC 48418 32 96.9 34 ..T............................. GTTTACTTTTCTTCACAGGCCTGCGCATCAACGA 48484 32 96.9 35 ......................A......... CATTAGCACTACTGGTCTGAGTCGATTGCCCAGCT 48551 32 100.0 34 ................................ CAAAAATCTGCATGATAAAGTCGCTAACCGCTTG 48617 32 100.0 36 ................................ AACGAATTTAAAAAAGAAATTGGAGGGGAAGTAACA 48685 32 100.0 36 ................................ TAAATGGTTAACTTTATACATAACAGACTTTAGAAT 48753 32 100.0 35 ................................ CAAATACGGTTGGTCTTGTTAAGATGCCGCCTTTT 48820 32 100.0 35 ................................ TAAAAAAGACGGCACATCCAAATGACTGTCTAAAT 48887 32 100.0 35 ................................ TTCAACATATTCTAATTCCATTCGTCGCTTAGCAA 48954 32 96.9 33 .............C.................. TAGTGAAATACATACCAAAAAGTGCATTAAAGT 49019 32 93.8 0 A............C.................. | ========== ====== ====== ====== ================================ ===================================== ================== 32 32 99.4 35 GTCTCACCTTACATAGGTGAGTGGATTGAAAT # Left flank : CAATTACTTGCAAAATCAATTCGTGGTGATATTTCAGGTTATCCCCCTTTTCTCATATAATTTGGTGATAACAATGATGGTATTAATAACATATGACGTAAATACAGAAGATAGACATGGAAGAAAGAGGTTGAGGAAAGTTGCAGAATTATGTGTTGATTATGGACAAAGAGTTCAAAATTCTGTTTTTGAGTGTTCTTTAGCCCCTGCTGAGTATGTTGAAATTAAAGAAAGACTATTAAAAATAATTGATGAAACAACGGATAGTATCAGATTTTATAATCTCGGGAAAAACTGGCAACATAGAGTTGAAAAAATAGGATTTGATAATTCGTATGATCCAGATAAAGATTTGTTAATTTTTTGAGTTGAGCGAACCTATAGTGAACAGAAAATCATATATAGGTTCGCCTTAAATAAATGATATTTATCTAGATTTTTATCAATTATCAAAATGGTTATCACTTATAATTATGTTATAAACTGCGCTATTTCGCGCA # Right flank : TAGTTTTACTGATACCACATCATTAAGAGTACAATTTGAGAATTATGTAGACCAACCTCCCCAAGCTAAGTGACTTTTGGGAGGTTGGTTTGGTTGGGTTATTCTGCTAGTTTGACGATTTGGGTGCCGTGGAGTTCGTGGATGCCAAGTTGGTGGGCGATTTCTTCGGCATTTTCGTAAGTGATTTGTCCGCCTGGTAAGATGGTGATGCGATCAGCTGCATAGTCAATCAATTCTTTTAAGCGTGGGAGAGTGTCTAAGATGGATTCACTCATTGGACCACCATGGGTAAGGATACGATGGACACCGTGATCAGCTAACCAGTCAATGGCTTCAAATTGGCGTTCGACGGGTATTTCGTCAAAGGCCATGTGGAAAGTAATCTGTAAACCTTCTGCGACTTCAATGAGTTCTTCCATCGCCTCTTCGTCAATCCAGTTACTTGGAGTCAGGCAACCAAAGACCACGCCATCGACACCAAGTTTTTTTGCTTCAATCAG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACCTTACATAGGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.38%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //