Array 1 2435-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_AWIL01000003.1 Vibrio parahaemolyticus S141 Contig3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2434 28 100.0 32 ............................ ATGATAAGCGCCGCCGCCTTTATCGAAACTAC 2374 28 100.0 32 ............................ GTTTTGCTCTACAAAGAGAAAACGAGTCTTTC 2314 28 100.0 32 ............................ TGTGTGAACAAACCCAACGCCATCGAACGGAC 2254 28 100.0 32 ............................ TCTATGTGTGATATCAATGTCATTGTGGCCAA 2194 28 100.0 32 ............................ GCAACAAAATAGACTTTATGATCGCTTGATGG 2134 28 100.0 32 ............................ GATGTGTTGAGTATCAGAAATTAATTGGTCTT 2074 28 100.0 32 ............................ AACTATCCGTAAAAATGGCGCAACTATCCTAA 2014 28 100.0 32 ............................ GCCAGCGCTGCATTCTGAGGAAATAGCAATTC 1954 28 100.0 32 ............................ AAATCAGCAAATCAAGAATTCGAGGAATTCGC 1894 28 100.0 33 ............................ TTCAGCCTCTACAGGAAAAAAGACAGGTAAGTT 1833 28 100.0 32 ............................ CCTATTGGACAGTTTTGGGACCGTGGACCCAG 1773 28 100.0 32 ............................ AATATGAACTTTGAAGCGCGAGACGGTGGTGA 1713 28 100.0 32 ............................ ATAAGCTCATTAAAGCCAGCCCCGCCGTAAAT 1653 28 100.0 32 ............................ AATCTTGAATTGTTATCGTAGAGCCGCCAATT 1593 28 100.0 32 ............................ ATATAAAAGTCACGGCGTTCTATATTACCATC 1533 28 100.0 32 ............................ ATTATCAGCCCATGATGCGACAACAGTTTGTC 1473 28 100.0 32 ............................ GCGTCCACTTCTTCATGTAGTTTTACCGCGAA 1413 28 100.0 32 ............................ TGGGCTGATGCGATTGCCGATCTACGTATGGA 1353 28 100.0 32 ............................ TAAAAATGAAGTTGTAACAGAAACGCCAACAA 1293 28 100.0 32 ............................ TCAGACGATATTCACGCACGTTTAGAAGACTT 1233 28 100.0 32 ............................ AAACCCTGTGATTTCTAAAGTTTGAGTAACTT 1173 28 100.0 32 ............................ CTCAGCGCGTAATAGATATTCATCATTATCAA 1113 28 100.0 33 ............................ TTGGGGAGACAACGCTCGGCAACAAAGAAAACC 1052 28 100.0 33 ............................ GCAAAGCGACCGTCAACCATGCCGAAAAACATG 991 28 100.0 32 ............................ TGTTATGCGCAAAAACAGAGTAAATGAGCTTT 931 28 100.0 32 ............................ TGTCCTAACGATAAAGAGCTGTTAAGAGATTC 871 28 96.4 33 A........................... TTCCTGTAATAATCCGTGATATCTAACCTTTAT 810 28 100.0 32 ............................ TGGAATAAAAAAGGAATCTGTCGGTGAAAATC 750 28 100.0 32 ............................ TAACCCCTACTCTTCACGCAGAGTCATACGTG 690 28 100.0 32 ............................ AGTGTTTGGCGTCCTTGGTAGCAAGTTTGATC 630 28 100.0 33 ............................ TTGCAAATGTAGTACCAGTAACTTTAAAAGTAT 569 28 100.0 32 ............................ ATTGGTGGTGCTTTCGGTCTATCTAGCGCCAA 509 28 100.0 32 ............................ GTTCCGCAACTTCAAAATCCTGCCAAGGGTGC 449 28 100.0 32 ............................ TATCGGACTCCTAGCGGTGAGATAACATTCTC 389 28 100.0 32 ............................ ACATACGCTCAATACCCTGTTGATATGTTTGG 329 28 100.0 33 ............................ CAAAGTGAGATTTAATAACCTCAATATAACGAG 268 28 100.0 32 ............................ ATCATAGGATTAATTCCAGCCTTACGCATATC 208 28 100.0 32 ............................ GCTAATTCTGCGGCTAATGTCAACATGAAAAA 148 28 100.0 32 ............................ CCAGTGGTTACATGCTCAAGATGTTCGTATGG 88 28 100.0 32 ............................ AGCTCACGCCGTAAAAAAGCTGCACGTTCGAT 28 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 41 28 99.9 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GAACGATGTGACTTACGTTAGCTTTACTCGGAAACAAGTCAAATCCCCTGAGCGAATTGAACGCGATATGCAGAAAAAAGCGGAGCTTTGGGCGGCTAAATCTGGCAGGTCATTACAAGAGTGTCTTGTGGAGCTGGAAAAGACTAAGCCGACCTCGCTCTGTTCATTACCGTTTATCTATTTACATAGTCAACAAACCAAACAACGTTCACCGGATAAGAGCAGCAAATTTCCGTTGTTTATTGAAATGAAAGCTATCGGAGTAAAACAAGAAGGTTATTTCGACTGCTATGGGCTGAATTCCAAACTTAATCGGCAAGATTGCTTAGGGACTGTTCCGCAATTTTAATCAATAAAGGGTAAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATAGGTATAAAATACAGCTAGTTACAATAGATAGATTTTGACAAGGTAAAAACATGATTTTTATCCTATCTATCTGTTGTAACTTTCTTTTATTGATTTATTCTGTT # Right flank : A # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 18-225 **** Predicted by CRISPRDetect 2.4 *** >NZ_AWIL01000470.1 Vibrio parahaemolyticus S141 Contig470, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 18 28 100.0 32 ............................ AGATTGATGAGCAATGGTTTTTTCTGCACTCC 78 28 100.0 32 ............................ AAACGATTACCGACCTTTCCCATTATTGACTC 138 28 100.0 32 ............................ ACAGTGCTGCAGAACTCATTGAGCGCATGGAA 198 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AAAGCTGCACGTTCGATG # Right flank : CGGATTGGTTTTAGAAT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [15.0-18.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 22189-21319 **** Predicted by CRISPRDetect 2.4 *** >NZ_AWIL01000086.1 Vibrio parahaemolyticus S141 Contig86, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 22188 28 100.0 32 ............................ CGGATTGGTTTTAGAATGGAATGCAGTGATCG 22128 28 100.0 32 ............................ GTGCAAATCCTCAACGCCCGCAATATCATTGA 22068 28 100.0 32 ............................ TGGTTGCTCATACGTTGTTTATGTCGGCCATT 22008 28 100.0 32 ............................ AAAACCAATATGAGCCAGCAGATTTATCGGAT 21948 28 100.0 32 ............................ TGCTGTGACTACCGTGACCGCCTCAATGTCTA 21888 28 100.0 32 ............................ AGGATCATCTCAGGGCTCAACTAATGCGCCTC 21828 28 100.0 32 ............................ GCCCAGCTTGGTGACGTAACTGCTGTTACTAT 21768 28 100.0 32 ............................ TACTTTGTGTGTGAATTCCATAATTAAAACCT 21708 28 100.0 32 ............................ ACAATCATTCATACCGGTCGCTGCAGCAACGC 21648 28 100.0 32 ............................ ACTCTGGGCGTTTATGAATCATTGCCAAAACA 21588 28 100.0 32 ............................ AGATAACGATAAAGCAGGCTGGGAAGTCGTTC 21528 28 100.0 34 ............................ ATCATCGATTAGCGTTGAGCGCTATGTTGATTCA 21466 28 100.0 32 ............................ TGTCACAGCCACGAGCGCGTCCCTGGTTAACT 21406 28 96.4 32 .............C.............. TTTAATCGCTGAATCGGCGGGGTTAGTAATCT 21346 28 85.7 0 ...A......A..C............G. | ========== ====== ====== ====== ============================ ================================== ================== 15 28 98.8 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : | # Right flank : GGCTGAAACGGTGTCCTCAAGTGTAAGCTTTATTCATATCGAGAGCTTTACGCTAAGTCGTAAAATTTAGATTTTATTCTCATAATATTTAGCCAAATAATTTCCTACATTAAGTTTAATAATAACCTTACTTAAAGGTATTTTTTATTTTCCATGTAGGGTAATAAATTTTTTGAAGTGTTACGAAAATCCATAATTATTCATGTTTAATTTAATTTAATTTGCCAAAATTTAACAAAAAACAAAAGTCAAAAGATATGATTGCTTGGAAATAATCGGTGAATAATGCATAAATTAATATTATGTGTATTATTATTGAAATTAATGATTGAAGTGTATCGTCTCGCGATAAGGAATAAAATAGTGTTGTGTAATGTTTGTAAATTGAATTATGACAAAACTATAAGGCTAGGTAGGATAGCCATTTGTGATGAATGTTTGATTTCTGCAAGTGATTTTTATAAAGAGCATAGTCATGAAAAGTTTGAAATTATATTTCA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //