Array 1 969-25 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVXS01000035.1 Rothia dentocariosa strain 1233_RDEN 70_990_12849, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 968 29 100.0 32 ............................. TTTTCCCCAGCACGGTAAAGCGCTACCGCCTC 907 29 100.0 32 ............................. TCTAATGCCCTGAGAACCACAGGGTGAGACGC 846 29 100.0 32 ............................. TACCCATCCGATCCCAGGGATGTACACTTCAT 785 29 100.0 32 ............................. CGTTGTTCTAGAAGCAGGGAACCGTCGTCGCC 724 29 100.0 32 ............................. GGCGGCGACTTGCTTGGGAACCTCGCACCAGC 663 29 100.0 32 ............................. GTCACCATCACCCCACCCGAAGAGGGCAAGCA 602 29 100.0 32 ............................. TCCTCAAACATCTTCAAGAAACGCTTGCGGTC 541 29 100.0 32 ............................. CAACGAGCACTGCGGCAACTCTCCACCTACAA 480 29 100.0 32 ............................. AAGACTGTACCGTCTTAGATGCATATAAAATC 419 29 100.0 32 ............................. TCGCGCAGCAGGCGACACTGGCGACACGTCCC 358 29 100.0 32 ............................. AAGCAGGGCAATCTCGTTCATGTCTGTACAGT 297 29 100.0 32 ............................. CATACCAAGACACATAGCAGACGACAGGGTGA 236 29 100.0 32 ............................. TGCCCGCACGGGCGGCGTAACCGGCCTTGACC 175 29 100.0 32 ............................. AGTATTCCGTTTCATGTGTCCGTTTCCTTTTC 114 29 100.0 32 ............................. AGCTTGAAGATACTCGCCAGCGACAGAATACG 53 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 100.0 32 ATGTTCCCCGCACCCGCGGGGATGAGCCC # Left flank : CGCCGTCCTTACCTCGAAGTA # Right flank : CGATTACGCGCACTAACCACCGCCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCCGCACCCGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCACCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [15.0-15.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 25949-27077 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVXS01000097.1 Rothia dentocariosa strain 1233_RDEN 216_34019_523009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 25949 29 100.0 32 ............................. CCGCGATGAACTGATCAAGCATCTTGAGAAGA 26010 29 100.0 32 ............................. TAAAGATGCAATCATTCAGTTGCTAATTGCCA 26071 29 100.0 32 ............................. GTGCACATCGTACAGTTGATGAAACAGCTAGG 26132 29 96.6 34 ............................A CCGAAAGGGTACCTTATCGTTGTTCGCCCGCCTA 26195 29 100.0 32 ............................. TTTCTTCTTTTGGGTAGGTGCCTTGTCCTTTA 26256 29 100.0 32 ............................. TACTAGTTCAGGTTTTAATTCTTCAACGGCTT 26317 29 100.0 32 ............................. CCGATTCAGATACTTGTCGGTACCGGTACGGC 26378 29 100.0 32 ............................. CTACGGGGCGACCTCTAGGATTCGCACCGTTC 26439 29 100.0 32 ............................. TTCTGAACCTCATACGCGGTATCGGTAAGGTT 26500 29 100.0 32 ............................. GCGTAGCCTCCATTGACGTACCCAACAGCGAC 26561 29 100.0 32 ............................. AGTCGCTTGGCGCGGTTGATGCGGTCTTCAAA 26622 29 93.1 32 .....................G......G ATCAGCTGATCATCTAAATACACGTCGTATCG 26683 29 96.6 32 .....................G....... CTGCCCCTACCATCCAAAGACATTAGAGAGGC 26744 29 96.6 32 .....................G....... TGGAATCTGCCCGGTAGCGCTTCTGCCCCGCT 26805 29 100.0 32 ............................. CACTATCATTCGTAGACTACTGGGCGGCCATG 26866 29 93.1 32 ...........A.........G....... CGGTAATAAGACCGTGCATAATACCGGAAAAC 26927 29 93.1 32 ......T..............G....... CAGTTACTCACTGTCAGTAGCATCAGCAGCAG 26988 29 93.1 32 ..............C.T............ GAAATGGGTACAACTCGGATAAAAGTGTCACC 27049 29 82.8 0 .....T..T...A...A....G....... | ========== ====== ====== ====== ============================= ================================== ================== 19 29 97.1 32 GTCTGCCCCGCGTGTGCATGGATGGTTCC # Left flank : GGGGAAGAATGTTGCCCAGAAGTCCGGTCTGAACCGGGTAGTTCTGGATGCGGCATTCGGCGTGTTCCGTTATCAGCTGGAGTATAAGACTGCCTGGTATGGTTCTACGCTTGAGAAGATTGACCGTTATTTTGCTTCGTCGCAGACGTGTTCGGAGTGTGGGAGGAAAGCGAAAACCAAGCTGACTCTGCGCGACCGTGTCTTCGACTGTGCGTACTGTGGGAATATGATGGATCGTGATTTTAACGCGGCCGTCAATATTTGCCGTGAAGCGCAGAGGCTTTTTAACAAAAAACTCGCCTCAGAAAATGGGGAGAGTCTAAACGGACGTGGAAGTCGAGGCGCTCTTCAGGGTGCTGAGACTGTGGAAGCGTCAAGACCACCTACGAGTCATCGTAGAGGGTCACCGTAGATGAGTAATCATCTGCCCATCTATTGCATTATGCACGCAACTGAATAGAGTTTTGCAGACATGCGGACGTTATACCTAGTCAGCAAGC # Right flank : CTGCCGTAAGCGATAGGGCTCTGGAACCGGTTTTCCTTATTCCTCCGAGATATCAATAGCCTGGAGTACCACCTGTTGAATTCCGGATAACGCCTCCAAGGAGCTATCAGCTAGGCAAGAGAGACTAGGAAACTCTGCAACGGTTCCCACAAATTCTTGGTCTTCTTCAGACCATTCGACGCGGTATGTGTATAGTTCTTCCCGAGGAATAGACATTTTATTCTGCCTCCAACTTCTTACAAAGCAGTTTTGTTTGCTTTTATATGCGTATCTGGAAGTATAGATAATTGCAGAGGGTGGAGCATACGCACGATATAGGGTAAGGTAGTAGCATACGAGTGAGCGCCCAGGTCCGCTAAAACTCTGAGGGCCCACCCTGTGAGGGCGTTATACTAGCCAGCGGCTAATAGCGTCGACTAACTTAGCGACCGCCTCGATGAATCGTGAACCTGCGTCAACAAGTCGCACGATCGTCCGGGCGGTTTCGCGTTAAAGCTGCA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGCCCCGCGTGTGCATGGATGGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTGCCCCGCGTGTGCATGGGTGGTTCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2190-25 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVXS01000022.1 Rothia dentocariosa strain 1233_RDEN 46_12179_198564, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2189 29 100.0 32 ............................. CATAACCTGGCAGGCAGTGCCAGGCGTAACAA 2128 29 100.0 32 ............................. GGGTACCCCAACGAGGGGTTCGCTGCCGCCCA 2067 29 100.0 32 ............................. GCGCCGCAGCATGGGCAGCCATGCCAACCGGG 2006 29 100.0 32 ............................. AGATACGCTCAAAGTTCGCATTATGTGCGCTT 1945 29 96.6 32 ............................G TAGAGAGGGAAGCTAACTAATGCCTAACGCAC 1884 29 100.0 32 ............................. CGTCGCCTACCACAGTAACATGCGGCTTCAAC 1823 29 100.0 32 ............................. CACGAAGTTCCGTAGGCATATCCGGCGGGGGT 1762 29 100.0 32 ............................. TACCGAGAGCGGACGTACATACGTAGCAGAGG 1701 29 100.0 32 ............................. GTGCCAGCCGCAATAAGCGCGAATCATGGACG 1640 29 100.0 32 ............................. CCGAATATCGTCCGTTTCTGGAAGATGCTGGA 1579 29 100.0 32 ............................. CTACGGACTTATTTACACTTACGATGGTAACA 1518 29 100.0 32 ............................. TGGAAGAAGCGAAACGCGCCGGGTTGGAGAAG 1457 29 100.0 32 ............................. GTCGGTTTGCACGCCGGGGGTGCGTTCGCAAA 1396 29 100.0 32 ............................. ATCCGAGAGCTTACGCAGGTTCATTGAACGTA 1335 29 100.0 32 ............................. CGTAAACCGAGTTTTGAAGTCAACGTTATAAA 1274 29 100.0 32 ............................. TCTACCTAGCGGGCGCGCGGTGTGCTATCGAG 1213 29 100.0 32 ............................. ATATGTTCGCACCGTGATTTTTACCCCCATAC 1152 29 100.0 32 ............................. CCCAATTTGCCGCGATACCCTGTGTATCTAGC 1091 29 100.0 32 ............................. CACCCTGAGGGCGCGGGCGGTGCAGCGGATAA 1030 29 100.0 32 ............................. TGGATTGGGGGCCACATCAGCAAAACGATGGG 969 29 100.0 32 ............................. ATGGGAATCCCAAGCCCGCACTGTCGAGCTCA 908 29 100.0 32 ............................. AACTGTCTTGAACCGAAAAATCGGGAAGTCGC 847 29 100.0 32 ............................. GCCGTGAGTACGCGCCCGTCCATATCACCGCC 786 29 100.0 32 ............................. TTTACAACCTGGTAACAAACATGATGGAAGGA 725 29 100.0 33 ............................. TAATAGCCACCTTGAGCCTCTGTACGAAAGTGT 663 29 100.0 32 ............................. AGAGGGATGGGTGTTCGCGTCTTATGCCGCTG 602 29 100.0 32 ............................. CCTAAAGCGGCTCTTGAAGAGCTGGAACGGTC 541 29 100.0 32 ............................. AAAGCAGAAATGCTAAATCGCTGATTGACAAA 480 29 100.0 32 ............................. CCACGGGGGCACCAGTCCCGACAGCACGCGGC 419 29 100.0 32 ............................. GTTCTTCCTAAACCGTACAAACCGGTCAGGGA 358 29 100.0 32 ............................. GCCGAAGAAATCTTGAATGCACGGATTTATCG 297 29 96.6 32 ............................T ATTTTGTGTAGACGGGCGAAGCCACGCCCGGT 236 29 100.0 32 ............................. TGCCGCTGCGTCATGGCACCACTCCTAAGTCA 175 29 100.0 32 ............................. TGGATTGGCGACCACATCGGCAAGACGATGGG 114 29 100.0 32 ............................. CAGCCCGGCGAATGGGAATACATACGCATCCC 53 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 36 29 99.8 32 ATGTTCCCCGCACCCGCGGGGATGAGCCC # Left flank : GGGCTCTGGAACGGTCGGGGAGAGGAGCAAGAAAGCGGGTACAACTATGGAGCTGATGAGTGATGATTGTTGTCGTATTATCCGCATGCCCGGTTGGTTTACGAGGTGATCTTACGAGGTGGCTATTAGAAATTAGTGCTGGCGTTTTTGTAGGAAAAGTGAGTGCGCGTGTGCGGGAGCATCTATGGAATCGTATTACGGTTACTTGTAGTGATGGACGTGCTCTTATGGTGTACTCGGCAGATAATGAACAGCGTCTTGATTTTAAGATTCATAATTATCCATGGGAGCCTGTAGATTTTGAGGGGGTTAAACTTATGATGCGTCCGTCTACTCCAAAAAAGGGGTTGGTACCTCGAAAAGGATGGAGCAAAGCAAGTCGATATAGGCGTGCTTCACGACGCAGGTAAGAGCATATCGTGTATTCTTGGAAGTAGGTTATGGGCTTTAAACTAATACTAAAACTTGAGGTATGGGGGTAAAACCCCATGTCAGAAAGT # Right flank : CTTTCGTACCACGCCGTCCTTACCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCCGCACCCGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCACCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [18.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //