Array 1 3679562-3671387 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053661.1 Thermoleptolyngbya sichuanensis PKUAC-SCTA183 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================================================================================================================================== ================== 3679561 35 100.0 46 ................................... GTTGTCGAGGAACCTGCAAACGGATCAAGCACTAGATCACCAGGAT 3679480 35 100.0 39 ................................... ATTTACTTCCAAATATAAATCTAGAGAAGTTATTTGCAC 3679406 35 100.0 37 ................................... GTCATATACCAGAGTATGTATTTTCGCTTCTGTGAGT 3679334 35 100.0 38 ................................... TCTACATCTGTTAGATCAGTGATGTTACCTAGTATATT 3679261 35 100.0 38 ................................... GTACGTTCGCGTCGTAGTTGCGCCGTACTGCCCGCAAC 3679188 35 100.0 40 ................................... ACGTTCAAGTTCTTAGAGCACTTCAATCTCTTGGAATCAA 3679113 35 100.0 32 ................................... GGTCGATGGCGCTGTAGCGCCCAATCACCTCT 3679046 35 100.0 43 ................................... TACATTACCTACGACTTTGCGTTTTTACTACGCAGGACTAGGA 3678968 35 100.0 36 ................................... TATTGGGTATTGCTTCATAGTTATTTAATTGGTGTG 3678897 35 100.0 42 ................................... GCTCCACCGTCTTCCGTTGGCGACAGTACTGGGGACGGCAAG 3678820 35 100.0 41 ................................... AATCGTCTTCGGTTTAGGCGATCGCCTTTTCTTGCTCGTCT 3678744 35 100.0 43 ................................... TAAACTCTGCTGTCAATTATTTTTAATGAACTAAAGCCTCCCA 3678666 35 100.0 37 ................................... CTCTTATAGAAAGCCAATCACCTCTTCTAAAAAAGTT 3678594 35 100.0 37 ................................... TTATCTAACTGCCTCTAGCCTTATCTAGAGCTTCGGG 3678522 35 100.0 40 ................................... CCGTTGTGGGCGAAAACGAATATATTGTCCAGTCGGTAAT 3678447 35 100.0 39 ................................... GCCGTATTTTATCTAAAATAGATAACTTTGCTTACATGA 3678373 35 100.0 42 ................................... ATTCAGACGACGAGACCAGTGGTAGCGACGCGCTTATTTCGT 3678296 35 100.0 43 ................................... ATCTGCCGCCGGAAGCCTTCAAGCCTAGCGATGCGATCGCCCT 3678218 35 100.0 43 ................................... CACCACTCGTAGGCGTAGTCTACAGATAATGACTCAGTTGTCT 3678140 35 100.0 34 ................................... TCGTTTTCTCGCCTGGACGATGTGGGGGGATGCG 3678071 35 100.0 42 ................................... TTAACTCAAGTTGCTAACTTATAGTCGGATCAGAAAGGAGTA 3677994 35 100.0 39 ................................... AGCTTTATCTAGAGCTTCGGGTAGCCCTCCGTCACATTT 3677920 35 100.0 41 ................................... TTTCTTCCATCGTCAGCAGCTTCTGTGCCGAGTCAGGATTG 3677844 35 100.0 40 ................................... ATTTTTCCTCTAAACTTTTTCTTTTTTGGTATTACTTGAG 3677769 35 100.0 39 ................................... AAACCATAGAAGAGCAAGGGTTTACTTACATAAAAAGAA 3677695 35 100.0 36 ................................... CATCCGAGTCATCTAACTCCTCATCGTCGTCTAAAA 3677624 35 100.0 33 ................................... TTCATTTTCTAATCTAGTAATTTTATTTTGTTG 3677556 35 100.0 36 ................................... GGACTAGAGTCTCTAGCTGAGACTGTGACTTAAGCC 3677485 35 100.0 36 ................................... ATTGTCTCAAGAGTTCCAGCAGAAGAGACTGCTTGG 3677414 35 100.0 46 ................................... ATAGCAGTCCCATCCGTAACGGAGGCTTCTACCGTCAACATAGTTG 3677333 35 100.0 41 ................................... TAGTTTTCGGCTTCGGCTTCGGTAAGCCAGTCTTCGATAAT 3677257 35 100.0 39 ................................... TTTCCCCAAACTCGTTTTTCTGCACGAGTAAAAAGCCGG 3677183 35 100.0 43 ................................... GCCCACGGCTCAGCCCCTACCACCGCTTCAGGCTCCCGCAGAG 3677105 35 100.0 34 ................................... ACTAGACATTTTACTGTAAAAATAAGATAGTATG 3677036 35 100.0 40 ................................... GTAAGGGTTCAATTCCAGGAACGTTTGACAGGAGCAATCT 3676961 35 100.0 34 ................................... GAGTATAAAGTAAATGGCAAGAAGTTAACTTCAA 3676892 35 100.0 39 ................................... TTTAAATTTCATAAATTTAGCCGATGTCTCTTTGAATAA 3676818 35 100.0 54 ................................... CGCTCAAGTCGAAGCGCTCGAAGGCTTTGAGGTTGGCAAGCAGTGTTGATATGT 3676729 35 100.0 40 ................................... AGCAGGAATAGTCCATTGAATAGAAGCCTCTTGTGCATTA 3676654 35 100.0 33 ................................... AGTTGTAATTATCTAACTCTAACTGGTACTGGT 3676586 35 100.0 38 ................................... CCTTGAAGTCGAAAGGTCACGCTTGAAGTCACAGGAAA 3676513 35 100.0 39 ................................... CCGAACTCGTTTTTTTCTACGAGTAAAAAACCGGCCAAA 3676439 35 100.0 42 ................................... CCTTTTTTGTGCGGTAGTCTTTTGACTGTGATTTTGAGTCTT 3676362 35 100.0 34 ................................... TGTAGTTAAAGCATTTCCTGCACTAGGTATTAAA 3676293 35 100.0 34 ................................... CCTTTCACGTTACTCTCCTGGACAATAGAGTGTG 3676224 35 100.0 37 ................................... TGCAAGCGGAAGAAATATACTACCTGCACCCACTGTT 3676152 35 100.0 36 ................................... GCCGGAAGCAAACAAAAGTAGTTTTGAAAAAGTAAG 3676081 35 100.0 45 ................................... GTCTCAGTGCTTGCCAAGTTCCATCCGCGCAGCCCCAGTACGTTG 3676001 35 100.0 35 ................................... TTTTTTATCTCGATAAGTAGCTGCTTGATTAGGGA 3675931 35 100.0 37 ................................... TATATATAACTAGTTAGTTCTACTAGTTAGTTCTCTA 3675859 35 100.0 31 ................................... CCTATTGAGGAAACGAAAAAGGTAGAGTCTT Deletion [3675794] 3675793 35 100.0 33 ................................... AAGATCAAAAGTGATTCCGGAGAATTAAACCAT 3675725 35 100.0 40 ................................... TTCTTCAAGTACTTCAAACTGACTCCAGTCAATTTCTTTC 3675650 35 100.0 40 ................................... CTGCTGATTTGGTTGGCACAGCCGGGCGGGCGGCGGGATC 3675575 35 100.0 44 ................................... ACGAAACAGGTTGCCCCAATCGCCGCGCCGCCTCTTTGGCGACT 3675496 35 100.0 31 ................................... TTGGCCACCGACATTCCTTCACAGATCAACA Deletion [3675431] 3675430 35 100.0 45 ................................... CCGGTCGGCAGCTGGGCAATGGTTAACTCTGCATCCCTGAATTCG 3675350 35 100.0 36 ................................... TTTAATAGCCCGCATTGGAATTGCGTTTAATTTTAT 3675279 35 100.0 36 ................................... TAGATGTGTATAAAGAAATTACAAACTCCTTGTCTG 3675208 35 100.0 45 ................................... AAAATTGGCTTATAGGCGCTCAGCATCCACTCACGGCGCAGGAAT 3675128 35 100.0 39 ................................... AGAGAATTACAGTGAGATTCCCAACTCCCCCTTCGACAT 3675054 35 100.0 34 ................................... CTACCAGTAGTCTGGTGTTGCGAAATAAATTCGA 3674985 35 100.0 40 ................................... TCGCTGCGCTGCGATCGCCTCTCGCAATCGCCGCCACTGT 3674910 35 100.0 42 ................................... TGGCAATGGCAGACATGATCGCCGAGGCGGGCAAACTAGGTG 3674833 35 100.0 38 ................................... TCTTCTCTCGCCTTGCGCCGCTCCCAGATGGTTTTCTT 3674760 35 100.0 43 ................................... CTAGGATCTACTTCAAGTATGTCTCTATAGCTCATAATTAAAA 3674682 35 100.0 40 ................................... AGTCCGCAACGAATTCAGCGCGATCGCCATAGTCTTTGCT 3674607 35 100.0 39 ................................... TTCGCCACCACGTCCGTTCTTGGCGCGCCGATTAAAGGA 3674533 35 100.0 34 ................................... GTAGGGGATTCGCGCCCTGGACTTGCCGGCGAAC 3674464 35 100.0 48 ................................... CGCTCCAGTACATTCTTTTGCTTATTCTACTGGTTATACAAACAGCAA 3674381 35 100.0 39 ................................... CTGTCGGATTTCCAGGATAAATAATTGTTACCGAGTTTT 3674307 35 100.0 35 ................................... TCTCTACCGGAAAACGCTGAGGTTGTTCTTCAGAA 3674237 35 100.0 37 ................................... GTCGATTCAGCCGACCCATTCGCCCCAAGCATTTGTT 3674165 35 100.0 35 ................................... GCTGAGCAGATTCGCCAACGCCCCGAAAAGCTAAA 3674095 35 100.0 48 ................................... CGGACTTGCCACCACATCTTGCGAACTCCGTAACCTCTTGCGTCAGGA 3674012 35 100.0 41 ................................... AAAAACTTTTCCGGCGACATGGTGGCAGACATCAACACCAC 3673936 35 100.0 38 ................................... TTTTTAGTTCGATGTGCTTGATCGGTCTTCGTCTTGCT 3673863 35 100.0 37 ................................... TCCCTTCTAGCCCCTCACAGCTTGAAGCTGTGAGGGA 3673791 35 100.0 51 ................................... AGAGAAACCGTGTTGCCCGAATAAGGCGTGTAGTACAACACCGTGGCATTG 3673705 35 100.0 39 ................................... TTCAAACGTGCCCTGAGCAGTTTGAGAACCCACGGACAA 3673631 35 100.0 36 ................................... CATCGGCGGCGAAGAACTTTTTGGAGAGACGTGCTG 3673560 35 100.0 41 ................................... GGTCGCACGCCCTCGCATTTTGCAATGTGAGTGTACCAGAA 3673484 35 100.0 43 ................................... ACCCCCTTAATTTTAAATTCAGGCATAACATTGTGAGAGTTTT 3673406 35 100.0 36 ................................... GCGCCAGCAATGGGACAGCCAAGCGGCGGCGTTTGG 3673335 35 100.0 37 ................................... GCAGAAGCTGCTACAGCGAGAAGGAAAACCCAAGCAA 3673263 35 100.0 40 ................................... CCGTTTGAGCGAAGATCGCGTTAACGATCGAGACGTTCAG 3673188 35 100.0 34 ................................... TCTTGCAGCGAGTTTCCCAGTTCGCGCACGGCGT 3673119 35 100.0 41 ................................... CTGCTGAGGAGTAACTGTGATGTCACCCACGTTAGCATCGG 3673043 35 100.0 34 ................................... GAAGTCATGAAAGTTCTCCAAATAGTTGATCCAA 3672974 35 100.0 34 ................................... ACGCTCTGGGGGGTTGAATCGGTTGATGTTCCGA 3672905 35 100.0 38 ................................... TTGGTAGATGAGCGACTCTAGCTCGTCGGGGTAGTCGG 3672832 35 100.0 35 ................................... AAAACCGTAAGGCGGCAAAAGCCCTTATGGATCAA 3672762 35 100.0 46 ................................... TACGACGCAGACGGCGACGTGTGGGATAACGCCAGACTCCCGGCTG 3672681 35 100.0 42 ................................... GGCGGGATATCAGACTGGTTTGCGTTTGACCCGCACGTCCAG 3672604 35 100.0 43 ................................... ATCGCGGCCCGGTTTGGCGGCACCGATGAGATCCGAGATTTAA 3672526 35 100.0 39 ................................... GCTAACCATTGAGGGGCTGATGGCAGACCTGCCCATGCA 3672452 35 100.0 40 ................................... AACTTGTTCAGGTCTGCCGTATTGCGTGATTACTTTCAAG 3672377 35 100.0 44 ................................... ATGCGTGACACCGATTTGGTGCCGTCAGCGATCTCAAGGATCAC 3672298 35 100.0 36 ................................... CCGCCACCCTGAGGCCGTATCTTATGCTGTCGGGGT 3672227 35 100.0 39 ................................... CCCCCGATGGCAGCAACACGTCATAGCGCCCCGACAACA 3672153 35 100.0 42 ................................... ACAACGCGCCCATAGCCCCAGCTGCGCTCAATCGGCGTGCGT 3672076 35 100.0 47 ................................... GGGCTGGACATCGAAACGGTGGGGCTAATAACCTGTTGCCGACTGGC 3671994 35 94.3 154 .............................G....G CTTTGGGAAAGAACGAAAAACGAAAAACGAAAAAGGAAACTGGATTTGCCCAGAATCGCCTCGCTCTTCGTTCTTCCCTCTTCGTTCTTCCCTCTTCGTTCTTTGTTCTTCCCTCTTCGTTCTTCGTTCTTCCCTCTTCGTTCTTCGTTTTTCC 3671805 35 91.4 154 .....C.......................G....G CTTTGGGAAAGAACGAAAAACGAAAAACGAAAAAGGAAACTGGATTTGCCCAGAATCGCCTCGCTCTTCGTTCTTCCCTCTTCGTTCTTCCCTCTTCGTTCTTTGTTCTTCCCTCTTCGTTCTTCGTTCTTCCCTCTTCGTTCTTCGTTTTTCC C,C [3671795,3671801] 3671614 35 91.4 154 .....C.......................G....G CTTTGGGAAAGAACGAAAAACGAAAAACGAAAAAGGAAACTGGATTTGCCCAGAATCGCCTCGCTCTTCGTTCTTCCCTCTTCGTTCTTCCCTCTTCGTTCTTTGTTCTTCCCTCTTCGTTCTTCGTTCTTCCCTCTTCGTTCTTCGTTTTTCC C,C [3671604,3671610] 3671423 35 91.4 0 .....C.......................G....G | C,C [3671413,3671419] ========== ====== ====== ====== =================================== ========================================================================================================================================================== ================== 106 35 99.7 42 CTTTCACCACCACTTCCCCGCAAGGGGACTGAAAC # Left flank : GCTCCACGAAAAAGTCAAACGACAGGTCAAACCCGCTGAAGACAATGTGCGGTTCTACTGGATTGCCGCCGACAGCCTGCCCAAAGCCCTGACGATTGGCAGTTCTCCACCAGAACCGCCGCCCCGAGCCTACATCATCTAATACCTTCAGAGCCAATCTGCTTTAACTCAGGACGCTCCGACACAATCTAGGGCGATCGCCAGATGAGTCATTCATCAGCGATCGCTCTTTTTGCTGCTTTCTTTTTTCTTTATCCTCTAGCGCTTGACTTTTAGAAACCAATCCGGGTTAATGGAGTTCAAGAGGGCATCGTCCAATCTCCACCGATCCTTGAAAGCCGCATAACTTCGTTGACCAGCGTCGATGCCTTATTCAGTGGGCATCTCAGGCGCTAAAAATTCAGGGTCTTAAGAGAGAAAAGTCGTTTTTGAACCCCAAAAATGACCACCGTCGATTTCCGCTCACGAGCCATTGCTGGGAGCAGGTTTCAGACGGCACT # Right flank : CTTTGGGAAAGAACGAAAAACGAAAAACGAAAAAGGAAACTGGATTTGCCCAGAATCGCCTCGCTCTTCCTTCTTCCCTCTTCCTTCTTCCCTCTTCGTTCTTCGCTCTTCGTTCTTCGCTCTTCGTTCTTCCTTTTTCCTCCTTCCCTCTTCCCTTGGGCACTTTAAACAGGTAAGTGCCTCTCCCTACCGCCATGCCCGAATTTCCCAAAGAAGACCTGCGACAGCGCACGAAAGCCTTTGCCATGCGGATTATCAAGGTGTATACCGCTTTGCCCAAAAGCACCGAAGCTCAGGTTTTGGGTAAACAGCTACTCCGCAGCGGAACCTCTGTCGGTGCCCACTATCGAGAAGCAGTTCGCTCTAGGTCAAAATCTGAGTACATCAGCAAAGTAGGCGTTGGGCTACAAGAACTCGAAGAAGCAATCTACTGGCTAGAGTTATTGACCGACGCTGGGCTGGTTGCTCCCCAAAAAATCAGCAGCCTGATGAACGAGGCA # Questionable array : NO Score: 2.94 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.30, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCACCACCACTTCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 2 4327377-4331068 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053661.1 Thermoleptolyngbya sichuanensis PKUAC-SCTA183 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================================ ================== 4327377 35 100.0 45 ................................... TCGACTTCCGTTTCCGTTTCAAATTCAAAATTCACAATCTTACCT 4327457 35 100.0 39 ................................... AGCCTTAGCTGGCTGCATGAGGGCGCAGATACCATCACA 4327531 35 100.0 40 ................................... TCTGTGGAAATCGAGTGGGCTGACGGCAGCCCGTTTACAT 4327606 35 100.0 38 ................................... CTACTAACCTGAGTTAGAAAAACCTAGCCATAAGTAAA 4327679 35 100.0 42 ................................... TTGCAGCGGCAATAGCCATGCCGCGCACAGCATTGCTTGCAT 4327756 35 100.0 40 ................................... ACTTCAATATGCCACTTTGTGGTCTATAATAAAAAAGCAG 4327831 35 100.0 44 ................................... TCCTGGGAATAAAATAAAAGGCAGCCTACTAGGAGATATGTAGT 4327910 35 100.0 37 ................................... TTTCTGTGTCAAATCCTACAATTAAGTCTTCTGTAGA 4327982 35 100.0 46 ................................... ATAGGTACTGCGTTTATCCTGATTATTTTGACCAGGTCTTGAAACT 4328063 35 100.0 48 ................................... CTGATTATTTTGACTATGTCTTGAAACTGTATTTTATCTGTTATCCCT 4328146 35 100.0 38 ................................... AGTATTCTAGGCACGTTAGAAAATCAAATAGAGAATTA 4328219 35 100.0 38 ................................... CGGTCTAATAGACTTCAAAATAGGCAGATAAAAAAAAT 4328292 35 100.0 36 ................................... AGTAGTAGTTGTAGATACAGTAACGTTAGTATCACT 4328363 35 100.0 34 ................................... AAGAAGATTAGTGGTAAACATACCTCCCAGAAGT 4328432 35 100.0 38 ................................... AGTTATATAGCTCTTTTTTCCAATATGACCAGGCATAT 4328505 35 100.0 34 ................................... TATATAGAATACGATAATGGCAATGGTAAGACCG 4328574 35 100.0 40 ................................... TTCGAGGGTTTTTCTGAAGTGGACTTAGAGGCAGTAGAGG 4328649 35 100.0 40 ................................... TAATGAAGGCTACTAGTGCCTTAGAGTACTCTAGGCACGT 4328724 35 100.0 42 ................................... TTGCTCTTCTATGTTGTATAGTTCATTTGTATCTTCAGATTT 4328801 35 100.0 42 ................................... CGTAGAGTTTGAAATCCTGGGTGAGGATGAAGTGATCGACGA 4328878 35 100.0 42 ................................... GCTCGATTCCAGTTTTAGCAGTGGGTCGCCGCAAACTTTTGA 4328955 35 100.0 39 ................................... TTCTTGAATCTAGTATTGTTTTTAGCTGCAATTATTACT 4329029 35 100.0 35 ................................... GAGGGCATCTGGTATTCCTGTTATTTCCCCGTACT 4329099 35 100.0 44 ................................... CTTTAGATAATTTATCTACACTTTTTAAAACTATTCCTCTTCTG 4329178 35 100.0 40 ................................... CTATATTCTGAAAAGCTCGGAATGCTGCAGTCACTTTTCC 4329253 35 100.0 39 ................................... GTTTAAGAGATACATTTTGCCTGCGCCTTGCGGCTTGTA 4329327 35 100.0 39 ................................... AATCCACTGACGGTACGAGCTACCTAGCTGCGCGCGGAT 4329401 35 100.0 41 ................................... TATTATCTTAAGAGTACCTCGTTCTAGTGCCCCTATACAGT 4329477 35 100.0 41 ................................... CTGGGAGCAAAGCAAAGATAGCCTACTAGGAGATATGTAGT 4329553 35 100.0 44 ................................... GCTTGGCTACTGAAATGCCACTTCTCCCTAAACTATAGATGATG 4329632 35 100.0 39 ................................... ATTTAAAGTAATGACAGCAAATCGGCTAAAGCAGCAGTA 4329706 35 100.0 41 ................................... CGCCGACCTGCTCAACCACAATTTCAAGCTGCCCATTGAAG 4329782 35 100.0 32 ................................... ATAGCTATCTTGCGTAGGGAAAATACTACTGA 4329849 35 100.0 38 ................................... CCGTAGTATTTCAGCGTTGCGACGCTTTTAGGGAACTC 4329922 35 100.0 37 ................................... TGGATAAAATATAAGGATCTATTAGTAAGTAATACGT 4329994 35 100.0 35 ................................... TTGATTGAATCTACACTTACTATTAGCTATATTAA 4330064 35 100.0 37 ................................... TGTATCCCATAGGGATCATCGGCTAAAATTTTGTTGA 4330136 35 100.0 39 ................................... TATATTACAGGAATAAGAATCACTAAAGGATATCCTAGA 4330210 35 100.0 44 ................................... CCTTGGAATTCGATGAATCGAGTCTTTGACGCTAGAGGGTTTGT 4330289 35 100.0 39 ................................... TTGGTTATCTTCATTTTTGCTTGCCTTTTTTCTCGATTT 4330363 35 100.0 48 ................................... ACTGTGAGCCTACGGGAGTATAACATTCAGAGTTTTTTGCCTTATTGG 4330446 35 100.0 37 ................................... ATGCAGGAATAAAGCGTAAAGGGTAGGAAATTAACCT 4330518 35 100.0 40 ................................... AGAGCAGGCAGTAGCCCTTGAATATACCCCCTAGACAATC 4330593 35 100.0 37 ................................... TTGTTTTTTTCGTGTAATTCTTGTTGCGTTAGCCATG 4330665 35 100.0 36 ................................... AATCGTCTTTCATTAATCAGTGTGCCCTGAAAGTGA 4330736 35 100.0 39 ................................... CAAATGCAAAATTTTATATTAATAATAGCTTAGTAGCAA 4330810 35 100.0 39 ................................... TGGGAATTACTTTTCTGCCAATATTGAACGCGCCATTCA 4330884 35 100.0 41 ................................... ATCCAAAGCTTTACTACTGCGATAAGAGTCGTGGGCTAAAT 4330960 35 97.1 39 ...........................G....... AATAGCTTGCGCTAGTTCACGATCTGCTTGACGGCTATT 4331034 35 94.3 0 ...............T....G.............. | ========== ====== ====== ====== =================================== ================================================ ================== 50 35 99.8 40 CTTTCAAGCCCATTTCCCCGCAAGGGGACTGAAAC # Left flank : GTCCGCCAGCGGAGCCGCGCCCCTCCCCCCCGGCACCCTCGTTCACCTCACCATCCACCCCGCCGCCCTGAAACTGTTCCCCACCACAGAGGACGTGGTAGATGGAGCAAAGGGGCGATCGCTGCCCGTCGCTTGAAGAAAAAACGAAGAACGAAGAGGGAAAAACGAAGAACGAAGAACGAAGAACGAAGAACGAAGAACGAAGAACGAAAACCCGCTCTTCCGTCTTCCCTCTTTGTTCTTCCGTTTAACGTTTCTTTCATTGACTTTTCTGGCGACAGTCTCCTATGATGCGGGTATGGATACGTCATATTCCCATCTCGCCTGAACCTTGAAAGCCGCATAACTTCGTTGACCAGCGTTGATGCCTTGTTCAGTGGGCAACTCAGACGCTAGAAAGCTAAAGTTTTAAGAAGGAAAATTCATTTTTAGACTCCAAAAACGACCACCATCGATTTCTGCTTACGAGGCATTGCCAGGAGCAGGTTTCAGACGGTACT # Right flank : CGTTTGGGAAAAAAGAAGAGTGAAAAACGAAGAGCGAAAAGTGAAGAACAAAGAACGAAAAATTGCTTTTCCCTTACACAGAAAACCGAAAAATCGTTAGTGTCTCAATTTATTCGCCACTCTCAAAATGACCAATCAAGAGCAACCATGCTGTAAGGGTTTCAGCGGTTGTCAGATCGAGGTGGCGAAAAACTAAGGACACGAACAAAAATGAAGAACGAAAAACGAAAAATCGCTTTTCCCTTGCACAGAGAACCGAAAAATCCGTTCTTCTCCCGTAAAGAAAAAATGAAAAACGAAGAACGAAGAACGAAAAACGAAAAATCGCTTTTCCCTTGCACAGAGAACCGAAAAATCCGTTCTTCTCCCGTAAAGAAAAAAATGAAAAACGAAGAACGAAAACCGAAGATCTGCCCTTCCCTCTTCGTTCTTCTATTCTTCGTTCTTCGTTCTTCGTTCTTCCCTCTTCCTTCTTCCTTCTTCGTTTTTCTCCTCGCCGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAAGCCCATTTCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 5177256-5178540 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053661.1 Thermoleptolyngbya sichuanensis PKUAC-SCTA183 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================= ================== 5177256 35 97.1 36 .................................C. CCAAATACCTAAAATGCCGCATCTCCGGCGGTTCAA 5177327 35 100.0 38 ................................... TTCGTGGCGTGACGGGGCGCTACCGCTTCGTGAAGTCG 5177400 35 100.0 43 ................................... TTTGGGTGCAGTCAATCTGGACTGCCTCCGATGGGTTTGTCCG 5177478 35 100.0 37 ................................... AGATTACACACTTTGGTTTGCCTTCAAACGAAATTAC 5177550 35 100.0 36 ................................... CTTGTGACATTGGCAAAGAGTCGGCAGATGAAGCCA 5177621 35 100.0 38 ................................... CCGCCTGAGCTAGTATCAGGGGCAGCTTTTCGTCTAGA 5177694 35 100.0 39 ................................... CGGGAAATTAAAGATACAGAGGAGTATGGAAGCTACAAA 5177768 35 100.0 33 ................................... CTCCCTGTGCTGAGCAGAAGCGGGTGTTGTACT 5177836 35 100.0 32 ................................... GCGCCGAGCGTATGCAGACAGATACCGGTATT 5177903 35 100.0 41 ................................... TTACGGTGATGGAACCTGTTATCCGGAATCCATTTGCCACT 5177979 35 100.0 40 ................................... TAGAGAGTTTCAAAATTTGGTTCTGGAGCTGGGCTCCAGC 5178054 35 100.0 36 ................................... CTCACTTAAAACTACTTCAAACCGCAGTTCCTCCCA 5178125 35 100.0 45 ................................... GACTTCATCCATCGTCAGCTTGCTCACTCCGCCATCCTCGAACAG 5178205 35 100.0 39 ................................... GGGAGTTGGTGCGAGGATCTAAACCAATGATCTCGCCGT 5178279 35 100.0 40 ................................... AAACTGAACCCGCGCAGTTTGTGTTTCCACCAATCTGCCG 5178354 35 97.1 42 .........................A......... ATCCCATCGGTCTGATTTCCCTCTACATCGGTGACATAGAGA 5178431 35 100.0 40 ................................... AATGCAAGATCGGCTACCCCTGCGGCCGATCTTGCATCAA 5178506 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ============================================= ================== 18 35 99.7 39 CTTTCAAACCCATTTCCCCGCAAGGGGACTGAAAC # Left flank : ACCCTAAACCCCCTAACCACCTGACACATCTCTGGGAACCCCCTAGTTTCTCCTAGAGGACGCTGACCCAAAACCCTTCAGCCAACCCCTCCAAACTCCAACCCAAAGACTACAAGCTTCAACCCCAAAACAACGCATTTCAAAGCTTTCAGAACTTTCGTCAGACAACCAACCCCCTCCCCCCTCCCCCCTTCCCTCTTCTCTCTTCTCTCTTCCCTCTCCCCTCTTCCCTCTCCCCTCTTCCCCTTAACTTTTTCTTCCATTGACTTCTTTGGCGCAGGTCTTCTATCCTATACCCAGAGATAAGCCACCTCCACGATCTGTCCAAACCTTGAAAGCCGCATAATTCCGTTGAATCGTGTCGATGCCTTATTCAGTAGGTACTTCAGGCGCTAGAGATTCAAGGTTTTAAGGGAGAAAAATCATTTTTGGGGTTCCAAAATGATTACCGTCGATTTTCGCTTACGAGCCATTGCCAGGAGCGGGTTTCAGACAGCACT # Right flank : CGCTTGGGAAGGAACAAAAAGCGAAAAACGAAAAAACAACCTTACAGAGCTGATTTGCAAAGAAGCCTGACACCTGACTGCCTGATACTAAGCTGCCTGACACATCTCTGCGAACCCCCGATTTCTCGTAGAGAACGCTGGCCCAAAAGCTCCTTCGTCCAACCCCTCTGGCTCCAATCCAGGGATTTCGACTCCAAGACAGCGCATTTTCGCGGCTTTTGGAACTTGTGTCAGGCAACCAGCTAAACCCCTCCTGAAAACCTATTGTCCTAAGAAATAACGCGCCTCCTTTGCCAGGGCACTTTTTAGGAACTGGTTCGTCCACACTGCCTGATGCCCTGCATCCTGATGCCTCCGCCTCTGAATCCGAGAAGCGTAGTGTATCCTGAGAGGAGCATTAAACGGTAAAGTTTAGTGATGGTTCGAGAAATCATGTTACTCAAACGCAGAGCTATGGTGTCTAAGTCCTCAATTCTCCGAATGCTTTCGGCAGTGGCGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAAACCCATTTCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.68 Confidence: LOW] # Array family : NA //