Array 1 127178-128487 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNYN01000015.1 Escherichia coli strain MOD1-EC6173 MOD1-EC6173_15_length_128685_cov_21.0926, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 127178 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 127239 29 100.0 32 ............................. CCGGAGATCATCATATTCTGATACGTTCCGGT 127300 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 127361 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 127422 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 127483 29 100.0 32 ............................. GCAAATTAAGCTGGCTGGCAATCTCTTTCGGG 127544 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 127605 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 127666 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 127727 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 127788 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 127849 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 127910 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 127971 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 128032 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 128093 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 128154 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 128215 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 128276 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 128337 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 128398 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 128459 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 15244-16921 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNYN01000017.1 Escherichia coli strain MOD1-EC6173 MOD1-EC6173_17_length_117002_cov_20.4226, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 15244 29 100.0 32 ............................. AATTTCTGGAAAAAAACAAATTCAAAAAATTG 15305 29 100.0 33 ............................. TTCTGCTGCTGGTTTGAAGAGGCGCTGGCACGC 15367 29 100.0 32 ............................. CAAAAAAATAGATTGGAAAACATTTAGATTCA 15428 29 100.0 32 ............................. TGACTGCGGTTCAAAATCTCCGGCACACGTCC 15489 29 100.0 32 ............................. GCCGCGCCGCACTGGCGCTGGCACGGTATGCA 15550 29 100.0 32 ............................. CCCTCACGGGCTATTTGGTTAATCGAAAATTA 15611 29 100.0 32 ............................. CCAGCCCTTGTTAACGTCTTCGCCGTTCGGGT 15672 29 100.0 32 ............................. GCCGTCATTGCCCGTTGAGATACCGCCCGGAT 15733 29 100.0 32 ............................. GCAAGGCGAGCTATCGCGAAATCGCAGCCCGC 15794 29 100.0 33 ............................. TCGTCGTTTATTATTGATGCTGATGTTTTTGCC 15856 29 100.0 32 ............................. GATACCGCGATTCATGCGACGATAAAAAATAC 15917 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 15978 29 100.0 32 ............................. CACCACATGAACCGCGACGCAGCGATTCACCG 16039 29 100.0 32 ............................. GTTATTTTTTCACTAATTTCGGTTAGAGGGAT 16100 29 100.0 32 ............................. GCTGTTTGTAAATTTAGAATTGCTGACTGAGC 16161 29 100.0 32 ............................. GAGAAAAATGCTACAAAAATGAGCTACGAAAC 16222 29 100.0 32 ............................. CCATAATCAAAAGCGGCCAGAACTGCCATTTC 16283 29 100.0 32 ............................. ATACCCCAGCGTTTCGTTATATGACGGAAGAT 16344 29 100.0 32 ............................. GGATTTGCATTAACGCGGCGTGAACATTATTT 16405 29 100.0 32 ............................. CTGCAATCACCAGCGGCGCGGCGTGGTTTGGT 16466 29 100.0 32 ............................. CGTCACCACGCGCGCTACAGGTAATGCAGCTC 16527 29 100.0 32 ............................. GGGATGAAATTGAACTTCCAGGCGACCGACAA 16588 29 100.0 32 ............................. ATTGATAACTCGCGCTCATCCATTTTGAATTA 16649 29 100.0 32 ............................. GTCTGTGATGGTCTGCTCGTGAGTCCGCGGCG 16710 29 100.0 32 ............................. TAAACACAAGAAAAGGGCGGCACGGAGCCGCC 16771 29 100.0 32 ............................. GCATATTTCATGCAGCGTTCTGAATGAGTAAG 16832 29 100.0 32 ............................. GCGTGGCGCGGGGCGTATTCCCCGGCGAGTAA 16893 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 28 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //