Array 1 5277-6463 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHPIQ010000009.1 Salmonella enterica subsp. enterica serovar Saintpaul strain 01/2011 S_84_contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5277 29 100.0 32 ............................. CAACAGCGTCCCGTATTCTGTATCGTTGACGG 5338 29 100.0 32 ............................. CGCATTACTACCGGGATTAGTACCTATCAAAA 5399 29 100.0 32 ............................. GCAGACGCTGCCGTCCCCCCGCTCGACGCTGA 5460 29 100.0 32 ............................. CAGCGGGAAAACGTCCAAGTGCCCATATCCCC 5521 29 100.0 32 ............................. CCTTCAGAACATGCGCGGTATTATTTTTGACC 5582 29 100.0 32 ............................. AGGTTGACCATCGTCAGCTTCATAAAGATTTA 5643 29 100.0 32 ............................. GGCGTTATTGAGTGGGAAAAAATCGTAAGCGC 5704 29 100.0 32 ............................. ACGCTCTATAGCCATTAGGTGCGCCACCACTT 5765 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 5826 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 5887 29 100.0 32 ............................. CGATAATTTATAAATTTTCGTCCACTCATCAA 5948 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 6009 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 6070 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCGGACCAATCGACTA 6131 29 96.6 32 ...................A......... CGCCGCCAGCTGGAAAAATGCCGCCTGTTAAT 6192 29 100.0 32 ............................. CTCCAGCCGACGCATTCGCTTGATCGCTTTAT 6253 29 100.0 32 ............................. GGGCTGGACCTCGATTTATTTAATACGTTTAT 6314 29 100.0 32 ............................. TCCCAACTCGTCAGGGCGGTTATCCAGCGCCA 6375 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 6436 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 22723-23607 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHPIQ010000009.1 Salmonella enterica subsp. enterica serovar Saintpaul strain 01/2011 S_84_contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 22723 29 100.0 33 ............................. TTGAGCACGACGAAATTTGGGTTTGATGCAGCC 22785 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 22846 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 22907 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 22968 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 23029 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 23090 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 23151 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 23212 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 23273 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 23334 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCCTCCTGC 23395 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 23456 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 23517 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 23578 29 96.6 0 ............T................ | A [23605] ========== ====== ====== ====== ============================= ================================= ================== 15 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //