Array 1 1018181-1016560 **** Predicted by CRISPRDetect 2.4 *** >NC_013854.1 Azospirillum sp. B510, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1018180 36 100.0 30 .................................... GACAAGTCCCATGCCGCGAATGCGAAGGCT 1018114 36 100.0 30 .................................... CGGTGGGCACCAGTGCCATCGCAGCCGCGG 1018048 36 100.0 30 .................................... GCGGCGTTCAGCGCGGTCGCAATGCGGTTG 1017982 36 100.0 30 .................................... CTTCTCGCTGGCCTTGTCCATCGCCGATGC 1017916 36 100.0 30 .................................... AGTCCTTCCTGGCGGACACCACGGAACCGG 1017850 36 100.0 30 .................................... AGCGCCGATCTGCGTCTTTGGCGGGCAGGA 1017784 36 100.0 30 .................................... ATGCGATCACCTGTCACAAGGCGCAGGGTT 1017718 36 100.0 30 .................................... TGCCCAGCAGTTGCAGATACTCGGGGCTGA 1017652 36 100.0 30 .................................... GACGCTGGGCGGCGCGAGCGGCGCGCTGAC 1017586 36 100.0 31 .................................... ATCATGTTCATGGCTTGGTCCTCACAGGTTG 1017519 36 100.0 30 .................................... ATTCGACACGGCTATTGGCATCCGAGCAGA 1017453 36 100.0 30 .................................... CCTTCTGGCCCTCAGTAGCGGTGTTCGGGG 1017387 36 100.0 30 .................................... GCCCTCGTGCATCTCATCGGCCCGGCGTTC 1017321 36 100.0 30 .................................... GATCGGCGCGCTCGACATCGAACATGTGGA 1017255 36 100.0 30 .................................... CGTTGCGGTCGGCGGCACTTTCGCCAGTGC 1017189 36 100.0 30 .................................... GTTCCAGTCGGCCAGCACCTTGTCGTCCCA 1017123 36 100.0 30 .................................... GGGGAGGGTCGCTTGATGGACATCCTCGAC 1017057 36 100.0 30 .................................... TGCGGGAAACCTATCACCCGGTCAACGCCA 1016991 36 100.0 30 .................................... TCAGAGAGTACGGCGCGGCGCTTAAGGACA 1016925 36 100.0 30 .................................... CTGGCAGCGTGTCGGGCGACATGATCGCGG 1016859 36 100.0 30 .................................... GTACAACCGGTGTGGCCGCCAGCCTTGTCG 1016793 36 100.0 30 .................................... TGTGTGACTCTTGGGGGCGCGCCAAGGGGA 1016727 36 100.0 30 .................................... TTGCCAGCGGCGCGCGGCGTGGAGCCGATG 1016661 36 100.0 30 .................................... ACCCGCGCGACGTCGAGGACAAGGCCGATC 1016595 36 83.3 0 ................G.....A.....C..C..CG | ========== ====== ====== ====== ==================================== =============================== ================== 25 36 99.3 30 AGTGTAGCCGATGGGGATCGGGGGTCCAGCCGCAAC # Left flank : GGAGGGCAAGGGCGACCTGGACCTGCCGGCTCTCGACCGCCCCTGGGCGCCGATGCCGCTGGAATGGCCCGCCGCGCCCCCGGCGGGAGGCGAAACGGGATGCTGAGCGGGTATCGGATGATGTGGATGATGGTGCTGTTCGACCTGCCCGTCCTGACCCGGCCCGAACGGAAGGCCGCCACGAAGTTCCGCCAGTTCCTGCTCGACCAGGGATTCGAGATGTCGCAATTTTCCGTCTACATGCGATTTTGCACCGGCAAGGAGCAGGTGGAAGCGCTGACCCGGCGAATCGGGCAGAACGTCCCCTCGACCGGCAAGGTCCATATCTTGTGTTTCACCGATCGCCAATACGAAACTATGGTGTGCTTCGACGGCCGCATCCGCGCGGCGCAACGCAGGAATCCGGAGCAATATGTCCTGTTTTAACCATGAAGCCCCGGATTCGACGCTGCCGGAAACCGGGAAAGTCCATGCCGAAACAAGGACTTACCCGGACATCC # Right flank : GGCATGGCTCGTGCGACGCGGGTGTGACACCGACCCGCGAACACCCGGAAAATATCAGGTCAGATGCTGCCGTTGCAGATAGTCCTCGCTCTGCATCTCCATCAGGCGGCTGACCGTGCGCTCGAACTCGAAGGCGTGGGTGCCTTCGGGATAGAGGCGTTCCGGCGGCCCCTCGGCGGCGATGACGACATTCACCTTGTGCTCGTACAGCGCGTCGATCAGCGTCATGAAGCGCTTGGCCTCGTTGCGCAGCTCGTCCTTCATGGTGGGGACGCGGTCGATCAGCACCGTGTGGAAATGGGTGGCGATGGCGAGATAGTCGGCCGCCCCCAGCGCCTTGCCGCACAGGTTCCAGAAATCGACCCAGGCCACGCTCTTGGCGGCGCGGTCGATCTCGACCCGCCGGCCCTGCGCGGTGAGGGTGCAGGGCTCGCCCGCCGCGCCGCCGGTCAAGTCGGAGAAGGCCTTGCGCAGGGCGGCGTCCGACGCCGGTCCCAGCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTGTAGCCGATGGGGATCGGGGGTCCAGCCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.40,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 1178058-1178605 **** Predicted by CRISPRDetect 2.4 *** >NC_013854.1 Azospirillum sp. B510, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ============================================ ================== 1178058 38 100.0 44 ...................................... TAAAACTTGTAAGCCAACCCGGACGGATCGCATGAAGCAGTTTC 1178140 38 97.4 36 G..................................... ACGATGACTGGAGCGAACGCGGCCCCTTCTCTAGAA 1178214 38 100.0 31 ...................................... TCTGGCATTGAAAAACAAAATTACCACAATG 1178283 38 100.0 33 ...................................... TTTCTTCCAGGTCTTCCAGGTCGGTGATCGGGG 1178354 38 100.0 32 ...................................... TTTCTGAAATATTTTTGTTGGTGGCTTAGTAG 1178424 38 100.0 35 ...................................... AAACCGATCCATACAATGAATGAGAATATGGCGGC 1178497 38 97.4 34 ..................................A... CGGCCCTGGAAGGTCTGGTCGTTGTAGTAGCCCC 1178569 37 78.9 0 .....AC....A.........C.A......-..C..T. | ========== ====== ====== ====== ====================================== ============================================ ================== 8 38 96.7 35 AGTTCGGAGGCGTTCCGCTATGGGAAGCGGATTGGAAC # Left flank : CGTCATGCATGCGTGGATCGAGCAGTGGGGTCAGCACCTGGGCGACGGCGGTCTGCGCCACCCGGTCCACCACCGGCGGGATCGCCAGCGGTCGGGTGCCGCCATCCTCCTTGGCGACATCGACGCGGCGCAGCCGGCCGGGCCGGTAGGTTCCTTGCGCCAACGCCAGTTGCAGCCGCACCAGCCGGGTCGGCAGATCGATGGAGAACTCCTCCACCGTCATCCCATCACCGCCGGCCCCGCCCTGGTTGGCGAGCACCCGCTCCCACGCCGCCTCCAGCCGATCCAGCCGGACGATTTGGTCGAACAAACCAAGGCCGACGGCGGGATCGGGCATGCGGGAACCCCGTGGAAAGTCGGAAAATGGTTTAGTATAAATGAGTTGATGGCTATTTCGTATCTATTTCCAAGGAGCGCCTTGACAAAATGCCTTATGGATTTCGCTGCCCTGTGGAAACGGGCGGGAAAGGGGCAGTTGCGACAATGAGTTGCAGGAGGTA # Right flank : CCGGACCAATCGCCTGCCGATCACGCCCTTTTCAGCCCCTCGGCCACCGCATGCAACAGCGCCGCTTCGTCCGGCAGGGGACTGGCGTGGCCCCAAAAGCCATATGCGGGCAATGCGCCGCCGCGCCAGCCGCCGGGAAAGACCCGGTCAAGCGCCGCGATCACCGCGCCAGGGCCATAGGTGTTGACCTCCGTCGGCGACAGCACGATCAGCGGGCGCGGGTCATCGGGGTCCAGGCGGTCCGTCACCACCGCGCAGGCCGCGTGCGGCAGCCGGGCCAGACGGGCGCGCCCGTCCAGAATGGTTTCCAGCGCGGTGACGGCGCGTTCCCCCGCCGCCTCCATCTCCGCCGTCACGCCCTGGGCGGCGCGGTCGTCGCGGCGGATGGCGGCGATCTCCGCCTCGGTGGCGCCAGCAGCCCGCAGGGCGCGGATGTGGCCGCAGTCGTTGGCCGCCACCAGCTCCATCCGCCGGGTCCAGGCGGCGGCGGGCAGTTCCAG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTCGGAGGCGTTCCGCTATGGGAAGCGGATTGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.00,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 3 3035840-3038413 **** Predicted by CRISPRDetect 2.4 *** >NC_013854.1 Azospirillum sp. B510, complete sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 3035840 37 86.5 36 TT.......C.C...G..................... GGCGGGGGTCGAGCTATCGGCGGCCGTAGGGTCCCA CA,ATT,T [3035843,3035851,3035858] 3035919 37 100.0 37 ..................................... GCCTCAACGGAGTAGCGTACCCGTCCGTTGAGAGCAG 3035993 37 100.0 36 ..................................... CGTGCATACACAGCAGGATGAGGTTCCGTGGGCGTT 3036066 37 100.0 39 ..................................... CCGGGCCGATGACCAGACGATCACGACATCAAGACCGAA 3036142 37 100.0 37 ..................................... CCAGCCCTGCCGCCACAGCCGGCCAGATACGGGGCCA 3036216 37 100.0 40 ..................................... GTGGTCAGTTAGTGGCCAGCACCCAGCCTCGAATATTCCA 3036293 37 100.0 36 ..................................... GCGAAAATGTCGACGAAGGAGATCGCCGACTTCACC 3036366 37 100.0 36 ..................................... AGACCTCGTAGACGATGGCACGGCGGATGTCATTTT 3036439 37 100.0 37 ..................................... CCTATACCGTGTTTCGCAGCGACGACTGGTCGGAGAC 3036513 37 100.0 37 ..................................... CAGACACCGTAATAGGTCCGCGCCTCAACCGCCTTGC 3036587 37 100.0 37 ..................................... GTGGGTGGAGGCAGGTGGGCTGTCCCTTGCCAACCTA 3036661 37 100.0 37 ..................................... TCAAGAAGCGCAAGAAATACTACATCTCCTACACCGA 3036735 37 100.0 37 ..................................... GCACACCGGAGTTACGCCAATGACCACCACCGACATC 3036809 37 100.0 37 ..................................... GACGGAACAGCATGAGGCAGCCACCGGCCGCTTACTG 3036883 37 100.0 40 ..................................... ACAGCTTCGGGTCGGTGGGCAGGTCGTCACGCAGCAAGTT 3036960 37 100.0 38 ..................................... GCGCGCTGCGCGTCGTCATAGTCGCGTATGGCCACGCT 3037035 37 100.0 37 ..................................... CAGCACCTTGTCCAGAGGGTACGCCTCGCTTGTCGGA 3037109 37 100.0 37 ..................................... CCGATGGGCGGCATCTCTATTACAACCGCGAATTCAT 3037183 37 100.0 37 ..................................... CAGCGGCTGTTCGACGTGATGTCGTGGGGTCATGTGT 3037257 37 100.0 37 ..................................... GGTCGAAGGTCAAGAGCGGGTACGCCGTGGCCAAGAT 3037331 37 100.0 39 ..................................... TCGCGGATTTGAGAAAACAAGGGAGCCTGTTTTGAACGC 3037407 37 100.0 36 ..................................... GATACGCTCGTAGGCAATCAGTTCACAGGTTGGGCG 3037480 37 100.0 39 ..................................... GCGCGCGTGCTCGCCGCCTTGTGGATGCGGCAGACCCAC 3037556 37 100.0 37 ..................................... GCAGCGGTGCCGCCGGCCTGATGCAGGTGATGCCGGC 3037630 37 100.0 35 ..................................... CCAGTGCCGGGAAGTCGTGGGTCTGTAGCAATGGA 3037702 37 100.0 37 ..................................... AAGCGGATGGAGGTCGGTTTGGAAACCAAGTGCAGCG 3037776 37 100.0 41 ..................................... TCTCGGGACGATCGCGTGATCCCAAGTTGGGAACAGTTCTG 3037854 37 100.0 37 ..................................... GCAGCCGGCGGAGAGCGCTGACCGACGGATTCGGGAC 3037928 37 100.0 39 ..................................... GGGCACTCGCCGACGCATCATCTGCTCGGCATTCTTCAC 3038004 37 100.0 36 ..................................... CCTGCTGTTCGCGTTGCAGGCCGGCAACCGTTTCGT 3038077 37 100.0 36 ..................................... GGAGAGACCGGCGTGGGTTTCCTTCCCGCCAGCAAC 3038150 37 100.0 41 ..................................... TAAGAATAACAAAACCTGATGTCTTCGCGGCGGGACAATAG 3038228 37 100.0 36 ..................................... CAGCAGCTTGCTGTTTTCATCCGCAAGCATTTCGTA 3038301 37 100.0 39 ..................................... GTTTCCTCCCTCGGGGCGGCGGACGTTTTCCCCCTGGTG 3038377 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 35 37 99.6 37 GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC # Left flank : ACCCGGTAGCTGTGCTGGCCCACCACCAGCCGCGTCGCCGAGGCGAAGGCCGTCACCACCGCCAGCGGGTTGGACCGGGCCGCGTCATCGAAGGAGCGGCGTAACGTCTTGCCGTCGATGGCGATCACCCCAGCCCCGGCCGTTCCCAGCCCCTCCAGGAAACGGCCAAAGCAGGCGGCAAAGGCCACCGGGTCCAGCAGCCGGAAGATGCGTGAGAAGGTGTCGTGACTCGGCACCCCGTTCTCCAGACGCAAAAACGACCGAAACAGCCCCTCGCGATCCACCGCGAAGTCGGCAAAGTCGGCACAGCTCTCCGCCCCGCACACCGTTGCCGTCAGCGCGATCGTCAGGATCTCCAGCAGGTCGTGCCGCTTGGCGTTGCCCGTGCGTGGGTCCGGCAACGCATCGAACGCTTTCTCAAACCACGATTGCATCGGGGGCTCCAAAATCGGCGATAAAGCCCCTTACAGAATCCTTTTCTCTCACACACGCTACTCAAT # Right flank : CGGCTCCCCCCATAAGCGTCTCGTCCTCAACGGCGAATCGCCACGGAGTCGAGCGGTGGAGAAAGCTGTCGAAGTGGACAGGTTTTTTGGTCCGCTTTCGTTCTGAACGATGTCAAGGATCCCTGCGAAAACAATGGCTCCGCCTTTCGCGAGCGGTGACCGGGAATTCGCGTGTGCCGGACCGCTCGCGAGGCGGGCGGCAGCGGAAAGGATATCATGGGACCGGCGGGGACGTCACCTGCGCGAGTCCGGACGCCTTTGTCCTACCCGTCCGCCGCATCCTCCCAACCCCAGCGGTCCCAGGCGCCGTCAAGGAAGGCGGTCAGCCGGGGGCCGGCGGGGAGGCCGGGGCAGGACAGCAGCGACGGCGCCACCCGGCCAGCGCCGCGCGTCCACCACAGGCTGGCATCGGCGCACGGCGGACCGGACAACCGGCCGAGCAGGGCGCGGGCGGCGGCCCCGACGCGCTCCGGATCGGGGCGGCCGAGGATCGCCAGACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.80,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [33.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 4 3158606-3163925 **** Predicted by CRISPRDetect 2.4 *** >NC_013854.1 Azospirillum sp. B510, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 3158606 37 100.0 37 ..................................... TACATCTGCGACATCGTTCGCCTTCGCGGTGGCCCGT 3158680 37 100.0 37 ..................................... ACGTACTTCCCGCCCATGGAGAAGCCCGTGTAGACGC 3158754 37 100.0 39 ..................................... GGCGCAACGATCAAGTTTCGTACGTCCCGGACGGCAGGC 3158830 37 100.0 34 ..................................... TTGCATATGCGGCATACCAGTACCCGGATTACAA 3158901 37 100.0 38 ..................................... TCAGCGTCCTTAGGATCGTCCGTGAGAAGGTCGGCCAT 3158976 37 100.0 36 ..................................... TGCAGGATGGACCCAACTTCGAACTGGAAGAGGCCG 3159049 37 100.0 37 ..................................... GCGTCTGCCAAGTCCATGCGGGCGAAAGAGACGCGAT 3159123 37 100.0 36 ..................................... GTTCGGAATATTGATCCGACCCCATTCCGGATCATT 3159196 37 100.0 37 ..................................... AGGCCCGCCGCGTGCTGGGCGCCTCCAATGTCGGACC 3159270 37 100.0 36 ..................................... GGCGTCTGCCGTCTCCAGCCACTTCGCCAGCACTCC 3159343 37 100.0 38 ..................................... GGGTGAAGCCGGCGTTGTCGTAGGCGATGGCGTCGTAG 3159418 37 100.0 37 ..................................... CCCGCGGCACCGGATCGAGGGGCCGCGGCGCAACGGC 3159492 37 100.0 36 ..................................... ATCACAATGAACGGCGAACCACCTCGCCCACCCTTG 3159565 37 100.0 39 ..................................... AGGGCGCGGGGAGGGGGAGCGCCCCCATTTCCTTCAGCC 3159641 37 100.0 42 ..................................... GCCATGTCGCCGTCGTGCTGTGGTGTCATCGTGTTGCCACTT 3159720 37 100.0 37 ..................................... GGCGGAAGCGGTGTGTCTGGTGGTAGGCTGACGGAGT 3159794 37 100.0 40 ..................................... TCAGTCGGTGCGGATACCGCCTTGGCGATCACAGAGACGG 3159871 37 100.0 37 ..................................... CCGTGCGGTTGCAACCGGAAGCCAACCCCCATACCCA 3159945 37 100.0 37 ..................................... ATGCCCGGAGGCACCCATGCCCGAAATCCCATCCCCC 3160019 37 100.0 35 ..................................... CCTTGCTAGCGGGGATCTTGATCGCATGGGGCGCC 3160091 37 100.0 37 ..................................... GCGCGAACGCGGGCCTGGGCGAGGTCGTGGACGATGG 3160165 37 100.0 37 ..................................... CGTCGAATGTCTTTGGAATGCGTAGCCATGTTGAAAG 3160239 37 100.0 38 ..................................... TTTGATGGCCACAGCTGCACGTCTTCGCGCCGCAGGAT 3160314 37 100.0 41 ..................................... GCGATATTGGTTCTCGCCCTGCGCGCGGTCGATCACCTCGG 3160392 37 100.0 36 ..................................... TGCGCGGGGTTGAACGATGGACAAGAGGTTGACGGA 3160465 37 100.0 37 ..................................... GCCGGGCCGCACGGTCACCGTCTCCGTCAGCTCCACC 3160539 37 100.0 37 ..................................... ATGCATATCCCAGGATGCAACTACACACTTAGAACCG 3160613 37 100.0 36 ..................................... AAGCGCCGCCTGCTGGCAATCGCCCCTGGTGCCGTC 3160686 37 100.0 38 ..................................... GTGGAAGGCTGACCCGACGGCGCCGCGCCACGGTGCGG 3160761 37 100.0 37 ..................................... GCGCTCGAAATACACGGTCCAGCCGGAATCTCCGCAG 3160835 37 100.0 36 ..................................... CTGGGGTTCGGCGGCGGGCGGTGGACTTCGGACATG 3160908 37 100.0 38 ..................................... GTCGGCACCTTCGAAGACGCGATGCAGTTTCTCGAAGA 3160983 37 100.0 38 ..................................... CGCGGCCTCGGGAGGCATGGCCTCGTGCCACTGGCCGT 3161058 37 100.0 36 ..................................... CGCCGGCCGTGAGGCCGTCGCCGGGCTGAGCGCCCC 3161131 37 100.0 37 ..................................... CGGCGTGATCTTGCCCGGGTTGCGGCGGGAGAGGCGG 3161205 37 100.0 36 ..................................... GTCGAAAGAGTGTGATCAAGCTGCTGCTGTGCATCG 3161278 37 100.0 40 ..................................... CCGACGCGACATAGACGGTGTTGGTCTTGTGCCAGCGGCC 3161355 37 100.0 35 ..................................... TGGGGCTGATCGTCGCCTTCCTGCCGCCGAAGGCC 3161427 37 100.0 39 ..................................... CGGAGGGAAACCACCAGCCGAGCAACGTCGCTCGGCTTG 3161503 37 100.0 39 ..................................... GACGCATGAAGTTCGTACCGGTGGCGTCCCGCGCATATC 3161579 37 100.0 39 ..................................... CCTGCCGACCCTGATCTGCAGCTTGTCGATGTCGAGCCG 3161655 37 100.0 39 ..................................... CGCCGCTCTATGAGTTCGTCGCCACGCGGTCCATCACGC 3161731 37 100.0 39 ..................................... TGGCCCATCGTCTATGACAGGAACGCCCTGCCCTTCGAG 3161807 37 100.0 41 ..................................... AGATAGACGCTCTGGCGGGGCGTGCCGCCGATGTAGACTCG 3161885 37 100.0 35 ..................................... GCCATTCCCCTTGTCGCTCTGGTCAAATTGGGCAA 3161957 37 100.0 40 ..................................... TGCCATACAGGCCAGGACTTCACGACCTTTCTGGGAAATC 3162034 37 100.0 39 ..................................... GACTCCCAACGGACGCTGACGAAATGGGGCGCACGCCGC 3162110 37 100.0 36 ..................................... TTGAACACTGCGGCGGAACACCCCATCGTGGTAACG 3162183 37 100.0 38 ..................................... AATGATATGGCTCTCTCGGGCTTCGTCATTGTAGACCC 3162258 37 100.0 39 ..................................... AGCAAGAACTATGTGGATCGAAACATCCTCAATCTTGAA 3162334 37 100.0 37 ..................................... AACTTCACGATCTCAATGGCTGTTTTGTCATCAATAA 3162408 37 100.0 37 ..................................... AGCAGTCCAGCGGATGCGGCGGTGGTTGGACAACCGC 3162482 37 100.0 38 ..................................... AGCCCCAGGTAGCCCAGCTTGTAGGTCTGGCTGGCTTC 3162557 37 100.0 36 ..................................... GCGTCCGACAGGTTGGCGCCCGACAGGTGGGCGCGC 3162630 37 100.0 36 ..................................... CCGGGTCAGGGTAGGCCATGAGACGGCCATCCGGCA 3162703 37 100.0 35 ..................................... GACACAGACAGCAACAAGGCCACCTCATCGGGTGG 3162775 37 100.0 36 ..................................... GGTTTTGGCTGAGTTTCGCACCGCTGCGGGATAATC 3162848 37 100.0 36 ..................................... TCTACCGGCAGCAATGCCGGCAGATCCTGATCGGGG 3162921 37 100.0 36 ..................................... TGAATGCTGGGGCATCATGTCCGGCCGTCATCCCGA 3162994 37 100.0 39 ..................................... CCGTGGAAAGTGACCGATCTGCGTTTGCTATGAACTGAG 3163070 37 100.0 36 ..................................... CGTCAACCCAATCAGCCAGACCCCTGGGTGCGGGCT 3163143 37 100.0 38 ..................................... TGAATGCGCATTTGTTTCTCCATTTCTTCAGGCGGCCC 3163218 37 100.0 37 ..................................... TTGCTTTCCGCCGCCTGCGCCGTCATCCTTTGGGGCG 3163292 37 100.0 38 ..................................... AAATGGAGCGTCAGGCGCTCCCAGGGGGAGCGGTCGGA 3163367 37 97.3 35 .T................................... CACAAGGCGATAGCGGCGCCCCAGCTCGGCCCGCG 3163439 37 97.3 37 .T................................... TTGCTTTCCGCCGCCTGCGCCGTCATCCTTTGGGGCG 3163513 37 100.0 38 ..................................... AAATGGAGCGTCAGGCGCTCCCAGGGGGAGCGGTCGGA 3163588 37 97.3 35 .T................................... CACAAGGCGATAGCGGCGCCCCAGCTCGGCCCGCG 3163660 37 97.3 40 .T................................... AAGGCAGTAGAGGCGCCGGCGGTCGGCTCCGCCGGAACAG 3163737 37 100.0 39 ..................................... ACCTCCACCCAGGTGTACTGCGGCAAAGTCCTCGCCACC 3163813 37 100.0 36 ..................................... TCGAAGGTGGCCAGCGACAGCCCGGTGCGCTCCACC 3163886 37 86.5 0 .....................T.A..G..G....T.. | G,C,G [3163907,3163918,3163922] ========== ====== ====== ====== ===================================== ========================================== ================== 72 37 99.7 37 CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC # Left flank : GTGACTTACGACATCGGCGACCCGAAACGGGGGCGGCGGGTATTCAAGGCGATGGAGGGCTATGGCCGCTGGCTTCAGCTTTCGGTTTTCCAATGCCGCCTGACCCCGCGCCGACGGGCGGCCTTGGGCGCCCGACTGGACGGTCTGATCAAGCCGTCGGAGGATCATGTCCTGATCATGGACATCGGTCCGGCCGAAACAGTGGATTTGCGAATAGAGAGCCTTGGCCGTCCATTCGACACGATCCGGCGCGAGGCGATCGTGGTGTGAGCATTGTGGGTGATGCTATGCTGGATGCCCGCCGCCCCTTTTGCGAGGGGTCCGGCACGCATGAAAATGCCGGCACCGCTCGAATTTGCCAAGTGGTTGCCCGCACGCGGTTCTTTGACATCGTGAAGAACGAATGTGGATCGGAGTCCGGCTTGGCGATCCGGGAAATGAGATACCCCTCGAAATCGGCGTCATTTTTAGCTATAAAATAAGAGAGTATAGTGGTGGCT # Right flank : CTGCCTTGCGGGAGGAGTGTGCCGCGTGCTGAAAGCTGGACGTCGGCGGCACCGGTGGGTGTGGCTGGCTTGGCATCGTGGCAAGCAGCGTGGTTTGCACTGTGGCAGTCCAACGTATCGAGGTCATCACCGGCGCCGGCGGGCGGCGCACCTACTCGGCCGAGGAGAAGATCCGCTTGGTCGGCGAGGCCCACGGCGGGCGCGGCGCCGTCGTCGCGGTGGCCCGCCGCCACGGCGTGTGCACCAGCCTGATCTACCGCTGGCGCCGACAGTTCAAGAGCGGAGAACTGTCTGCCGCGGCGCCCTCCTTCGTGCCGGTTCATGTGTTGGAGGGGCCGCCGTCCGCCGGCCTGCTCTCTCCCACCAAGACGCCGTCGGCGCCGGAGCCGGCACCCTCAGCCGAGCGCCGTGCCGCCCTGGTCGAGGTGGTTCTCGCCAACGGCCGCGTGCTGCGCGTCGCCGAGGATATCGCCCCGGCCACGCTGCGCCGACTGGTCGGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-17.30,-16.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0 Confidence: HIGH] # Array family : NA // Array 5 3200866-3199247 **** Predicted by CRISPRDetect 2.4 *** >NC_013854.1 Azospirillum sp. B510, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 3200865 35 89.2 37 .G...A.--............................ CTCCATTGAACACCGAGACCCCGGCCCGACAGCCGGG 3200793 37 100.0 39 ..................................... ATGACGCCGTAATACTGGGCCATCTTCGCGCCCAGCACT 3200717 37 100.0 37 ..................................... GTCATGGATGCAGTCCAAACGGTACGGGTGGAGACGG 3200643 37 100.0 37 ..................................... AGGACGCGGCGGATCGTGGATGCGGACTCGCAAGAAT 3200569 37 100.0 41 ..................................... ACCACGAAGGGGCCGTCGATCAGCGCCAGCGGCAGATCGGC 3200491 37 100.0 39 ..................................... GCCGGCCGACCTCGGCCGCTTCCTGCGCGCCTGCGGCCT 3200415 37 100.0 36 ..................................... AAGACCCCGGCCGATGGCGCGGTGATCGCCGCGGTG 3200342 37 100.0 35 ..................................... GCTGCGGTGATCTCTGGGGTGTCGGTCACTGCTTC 3200270 37 100.0 41 ..................................... TGCGTGATCTCCTGCTGCTGGATGACCAGCGCCTCATCGCC 3200192 37 100.0 34 ..................................... GCAGCGGCTACCATCAGACCATCGTCGCCTCACC 3200121 37 100.0 38 ..................................... AGCCGACAGTTCCGCCGTGGTCTGACGCTCTGCGGCAA 3200046 37 100.0 39 ..................................... CACGCATCCTTCGGCCGCCGCAGCGTCGGACGAAGCCCG 3199970 37 100.0 40 ..................................... GGGAACTACGGGCGGCGGCACCACCGCTGGTGTCGGAGAG 3199893 37 100.0 39 ..................................... GGCTCGCCCGTGGCATAGGGATGTTCCGGGCCGGGCGCG 3199817 37 100.0 38 ..................................... CGTTTAATATTTTTAGCGGTGGCAGCCGCACAGCATGG 3199742 37 100.0 38 ..................................... AACCTGCGGGCGCTTGCGTGGCGCAGGCTGCCAACCGG 3199667 37 100.0 36 ..................................... GCCGAGGACACGCACTGACCGTCGCGTCGCCCGTCG 3199594 37 100.0 40 ..................................... AATGACGTGACATATCCTGACAACCAAGCGCCATATACGT 3199517 37 100.0 38 ..................................... AACCACCTGGGGGCGGTGGCCACCTTCGCCCTGTCCTT 3199442 37 97.3 39 .....................T............... GCCTCATTCCAGAAGCCGCCACGGCCAGCGACATCGAAG 3199366 37 100.0 46 ..................................... GAGGCCAACCGCTGGTCTGTGCTTCGCCAACGGGAGCGGCTTGGGC 3199283 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================== ================== 22 37 99.4 38 CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC # Left flank : CGAACGCCCCCTGACCGGCCAGCCCGCCGAGGACCGCCGCCGGATTCGCCAAGCGGAAGCCCGGCCCGTTCTCGATGAACTGGCCACCTTCCTCGACGCCGCCTTGGTGCGCATCCCCGGCAAGGGCGACCTGGCCAAGGCGATCCGCTACGCCCGCTCGCGCTGGACGGCACTGACGCGCTACGTGGACGACGGCCGGCTGGAGAACTCCAACAACGCCGCCGAACGAGCGATCAGGCCGCTGGCCATCGGAAGACGCAACTGGATGTTCGCCGGTTCCGACGCCGGCGGGGAGCGTGCCGCGGCGATTTATACCATCGTGGAATCCGCCAAACTCAACGGCCTCGATCCCCAGGCCTACCTGCGACATGTGCTCGACCGCATCGCGGATCACCCGATCAACCGAATCGCCGATCTCCTGCCCTGGAACCTCACGATTCCCGACCACGGGTGAACGGAAGCGGAGCCGTCAACCCAATTCCGCCGCAGTCGCCAGACGA # Right flank : GGTGGTCGGATCCGTCGTAAGCGTCGTCTGGCGACTGCGGCGGAATTGGGTTGACGGCTCCGCTTCCGTTCACCCGTGGTCGGGAATCGTGAGGTTCCAGGGCAGGAGATCGGCGATTCGGTTGATCGGGTGATCCGCGATGCGGTCGAGCACATGTCGCAGGTAGGCCTGGGGATCGAGGCCGTTGAGTTTGGCGGATTCCACGATGGTATAAATCGCCGCGGCACGCTCCCCGCCGGCGTCGGAACCGGCGAACATCCAGTTGCGTCTTCCGATGGCCAGCGGCCTGATCGCTCGTTCGGCGGCGTTGTTGGAGTTCTCCAGCCGGCCGTCGTCCACGTAGCGCGTCAGTGCCGTCCAGCGCGAGCGGGCGTAGCGGATCGCCTTGGCCAGGTCGCCCTTGCCGGGGATGCGCACCAAGGCGGCGTCGAGGAAGGTGGCCAGTTCATCGAGAACGGGCCGGGCTTCCGCTTGGCGAATCCGGCGGCGGTCCTCGGCGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-16.40,-17.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA //