Array 1 1143966-1145239 **** Predicted by CRISPRDetect 2.4 *** >NC_014831.1 Thermaerobacter marianensis DSM 12885, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1143966 37 97.3 37 ........C............................ GACGGCCCACGCCGCTGGGCACGGCCCACGTGACGGT 1144040 37 100.0 34 ..................................... GAGATGCAGCACGAGTGGGCCCCCCAGAGCCGGC 1144111 37 100.0 36 ..................................... CGTGTTGTGGACGACGACGGGCTTATCGCCCGCCAA 1144184 37 100.0 35 ..................................... ATGGCCGATCCAAAGTGGACGCCGGGGCCGTGGCG 1144256 37 100.0 38 ..................................... CCTCAGTCCGCCATGCCGTTGCGAGTGCCTGCAGGGTC 1144331 37 100.0 36 ..................................... CCACTTCGGCCGTGTGCCGGGCGTGGTGGGGTTCTT 1144404 37 100.0 36 ..................................... CCTCGCCCCGGGCGATGGCGTCCTCGATGATGCGCT 1144477 37 100.0 34 ..................................... GCGCCAAGACGGGCGTGGACCGCAGCACCTATGC 1144548 37 100.0 34 ..................................... TCGGGCCCAGTTGGCCTCGGGCGAGGTGCCGCTG 1144619 37 100.0 34 ..................................... CGCCTTCCTGCGCCAATTGTTCCCGAGCCTGCCG 1144690 37 100.0 35 ..................................... CGGCTCGTCGCGCTCTGCGTTGTCGACGAGCAGGG 1144762 37 100.0 35 ..................................... GCGCAGGCTCTCGCTGAGATAGAGGACGCGGGGCA 1144834 37 100.0 36 ..................................... GACGGACCTCGACTGGCAGACCGGCGAGCTGCAGGT 1144907 37 100.0 38 ..................................... GACGCTGATTCGACGGCGGACGAAGGTCAAGATCCGAC 1144982 37 100.0 36 ..................................... TCAGCGTGGCTCAACGTGACTCGTGGCGGCGGCCGA 1145055 37 100.0 38 ..................................... ACCATCGTCGAGCCGTGCCAATGGTGCGGCGGCACAGG 1145130 37 100.0 36 ..................................... CAGCAGGCCCTCCACCTCGAACGGCGTGGCGGTCGC 1145203 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 18 37 99.8 36 GCTGCAACGTAGCCACGGTATTAACCGTGGATGCGAC # Left flank : ATGGCAAACAGCCCGCGAAGGGCGTGGTGGGCCACGATGCGCAGGGCTTCGTGGTCGTGGCGCCCGCGTTCACGGTGAGTCTGATAGATCTCCCGGGCCCAGTCGTGGTGTCGAACGAGTTGCTGCGCCAGCACTTGCACCGTATTCCGTGCCTGTTTGTTGCAAGCGTGGCGGAAACGCACCCGGACGGTCCTGCCGCTGCGGGCCATGACCGGAGCCGTCCCCGACCGGCATTGGATGGGGCGGACGTCGGGGACCGCCTGGCGGTCCTCCCCGAAGACGGTGATCATGCCGGCGGCCAGGACCGTGCCGATCCCTTTCATGGATCGAAACAACTCACCGTCCGGGTGTGCCTGCACCAGGGTCTCCAGTTGCTCATGACAGGCCTCGGGCTCGCGGCAGACGGCTTTGAGCTGATCCACCAGAAAGAGCATGCGGCGAGCCTACAGGGCCAGGGTGGCCGGATCGGCCGGGAGCTGGGGCTTGCCCGGGAAGCGGCA # Right flank : CGGCCCGTCCAACGAGCCGGCTTGCGACAAGGCTTGGTCGAGCCGGATGCGCGAACCTCTGCCCAACCCGGCTGACCGGCCGCGGCCACGTCCACTCGGTTGTCAAAGAACCTAGAATTGGTGCGCACTCGTGCTCGCGCGAACCTCCCCGGGAATTGCCACCCACTTGTGGTTCGCGCGGGGACGGCGTTTCCTCTACCCGGCCCGCGGGCGATCCGCAATGGCTTCCGTTTGCCTTTGCCCCGTCCATAGCGTTGCGGGACGCAGGGTGAAATAACCGTGCCCTGTGGTGGGTGCACGGCTGGAGCGGAACACCTCCAATTGGTTTTGCCGCCGCAGCCGTTTCACGAAGGACCGCTCGTTATGAACCCCCATGGCGAGTAAAGACCGAAGTGTGTCGAGCGAGATCGGCTCGCGCCAGATGGGCCAGTACAAGGCCGTTCCGTCCCGGTCGAACCCGCCAACCCGGAACTGGCCTCCCTCGATATAACAAGGGAAGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGCAACGTAGCCACGGTATTAACCGTGGATGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.70,-11.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [25.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA // Array 2 2479885-2481108 **** Predicted by CRISPRDetect 2.4 *** >NC_014831.1 Thermaerobacter marianensis DSM 12885, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 2479885 30 100.0 37 .............................. CGACGCCCTGGTCGACGATTCGGGCATCGACTGGACA 2479952 30 100.0 36 .............................. TTCCAGTTCCCACCGCGAAGAGCGGCCCGCGCGAAC 2480018 30 100.0 36 .............................. ATGTTGTTCGCCGGGTCCTGGCCGGGCAGCGAGTAG 2480084 30 100.0 37 .............................. GACCCGGCAGGGAGCGGCACCTGAAAACCGGCAATTT 2480151 30 100.0 37 .............................. GGGAGCCACCATGACGGCCGGGGCGGTCTGCCGGTCC 2480218 30 96.7 37 ........................T..... TATTTACGAATGGTCCAGCGGTATTTTTGGGCGATGG 2480285 30 100.0 36 .............................. CAAGGAACCTGAAAGCCCTTCTAGTTCTCGTGCTAC 2480351 30 100.0 35 .............................. ACCGAGGCGGGTATCACGGACCAGGACCTGCTGCC 2480416 30 100.0 41 .............................. CTGATCGTCGGCCACCGGCTCTCCGAGCGTGAGGCGGCCAG 2480487 30 100.0 36 .............................. GCGCCCATTGCGTAGATCCGGCGGCCGAACAGGTAC 2480553 30 100.0 36 .............................. ACCCCGGCACATGGCGCAACCTGCAGGACGTGGTGC 2480619 30 96.7 35 .....................T........ AGGCGGCGCTTGGTCGCCCCGTCCGAGTCGACGAG 2480684 30 100.0 37 .............................. ATCTTCTACGTGGAGGACGAGACCAGCGCGGCGCCGG 2480751 30 100.0 35 .............................. GTCACCGTCACGGTGGACGTGGGCCAGGCCACCGA 2480816 30 100.0 36 .............................. TCAGCTGGACCGCCGGCGCTCATCCCCTCCGTCGCA 2480882 30 100.0 36 .............................. CTCCATCCCGGCCTGCGGCACGGCAATGCCAACTGG 2480948 30 100.0 35 .............................. ATGTGGACGGCGTCCTAGCCGCTTCGGCTAGTAAC 2481013 30 96.7 36 .............T................ CCGCATTGTCATACGTCCATCGCAAGGCGCTGCGTC 2481079 30 96.7 0 .........................C.... | ========== ====== ====== ====== ============================== ========================================= ================== 19 30 99.3 36 GTTTGTAGAGTGCCTATGAGGAATCGAAAC # Left flank : CTGCCCCGCGCTTCGGGCCCCCGGGCTCTCGTGTCCCGCGATCCGGTGCCGAGAGCCGTGGTGTGCTGCCACGTGCCCCCTGCCCGGATGTCCCGTGCCCCGGTGTATCCATTCACCCACCCCCGACACGGTCCGCGGATTGGGACCGGCCCAGGCTAGGCTATGCGGCCGGGGGGTGGGGTAGAAGATCGGCAGCAGCGGGCGGAAGGGGAGCATACAACCGGGGCAGCAGCCACGGGCGGGGAGCGGAATCGACCGGGAAGCGGCAGCGGGCCCCACCGCCGGGCCGCATCGCCCGGCGCGGCCGGCATGCTGTCGACCTCCGGTTACCCCGAAATCCCTGGCGGGTCGACAGCAGGTGGAAGACACACCCAAATGGCGTCGCCACGCGGTTTCTTGACCTTTGGCTTCCATGATAACCCTTGCTTCCTGGATATGGCTCGACAGCAGGGGAGGAAACAAACCGTTGCAGGAAAAGGGTTCTCGGGGTCGAAGGTAGG # Right flank : CGCGGTTCAGCGGGGGCTGCAAAGCAGGACATGAACTGTTTGTGGAGTTCGTGTCGTCGCGGGCCGGGAGTGGGTCAGCCGCCGGATCCTGCGCGCCATCGAGGAAGCCGGCATGGAGTCGACGCGCCTGGGCGTGGGAAAGGTACCCGGACCCTGGAGCAGGCGGCCGCTTGAGAAAGCCCTCCCTTTACCGGTCTCGTCACGCCTTACGTCACCGCTTCCCCCGACGCCGCCTCCGGTGTCACCGGGTGCAAGAGCTTCTGCAGGTCTCCAAGCGCCTCCCGAAGAGCGCGAGCGCCCGCCTCGATGCACTCCGGTACCCGGTGCAGGTCCGTCAGTTGAACGTCCGGCAGGTCCGGCTGAAGCACCAGGTCGGCAAACCGCTCCAGCTTGAAGGCCGCCAGGTCCCGTGCCATGAGGTCGAAGGCCTGCCCGAGAAAGTCCAGCAGCCCCGCCGGTTCCCGGCGCCGGCGAGATGAGACGTCCACCGCCAGGACCAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGAGTGCCTATGAGGAATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: F [matched GTTTGTAGGGTGCCTATGAGGAATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //