Array 1 523843-524583 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP060435.1 Listeria monocytogenes strain GIMC2009:LmcUH4 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 523843 29 100.0 36 ............................. TCTTTAGTTGTTACTTGTTGGTTAATGAGATCTACC 523908 29 100.0 36 ............................. TGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGC 523973 29 100.0 35 ............................. GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAA 524037 29 100.0 37 ............................. TTACCACCAAAGTCCCTACACTCAATACCACCAAAGC 524103 29 100.0 35 ............................. CGCTCTGACCTGTTCCTTGTGCAACACTCGTTACA 524167 29 100.0 34 ............................. TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA 524230 29 100.0 35 ............................. CTAAAACATCCTTCACTGTATCAACTCCTTTCTAT 524294 29 96.6 36 A............................ AAAATAGGAGGAAATAAATTATGACTATCAAATTAA 524359 29 100.0 35 ............................. TTTGTTGAATCAACGGATATAGATTTTACAATTTC 524423 29 96.6 37 ................A............ TTGGTTCCTTTGGAAAACAACAATAACGTGTAGTATT 524489 29 75.9 36 ......T.C.A.C...CA...T....... GCAGAAGCAGCAAAATAACCAAAAGTAATGACTTTC G [524512] 524555 29 79.3 0 ......A..T....AGA......A..... | ========== ====== ====== ====== ============================= ===================================== ================== 12 29 95.7 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : CGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAGTGGTTGGGGTGGAAGAAGTTTGGCGGTATTTGCTTGGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGTGG # Right flank : TGAAAACCTGTTATACATAGGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCAAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCGTTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGGGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTATTACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATCAGCGAGATAGAAATT # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 2662364-2660346 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP060435.1 Listeria monocytogenes strain GIMC2009:LmcUH4 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2662363 36 100.0 30 .................................... TCGTGATTTCTTCCTCATGCGCGCTTTTGA 2662297 36 100.0 30 .................................... TTATCAGCAATTGAAACTATTAAAAATGAC 2662231 36 100.0 30 .................................... CCTAGACCTAGATGCTACTAGAGTGGACGA 2662165 36 100.0 30 .................................... TAATGCATCTTTATATTGATTTACCTCACC 2662099 36 100.0 31 .................................... TGGAAATGAACGATTGTCGGCATTCACGAAT 2662032 36 100.0 30 .................................... AGATATGGGCGAACTACCCGACGACAACAA 2661966 36 100.0 30 .................................... GAAGAAGTCACTAGTTGGGTCAAGCAAGGC 2661900 36 100.0 30 .................................... TAGTGCCAGTAAATTCAGTTCCTCCAAAGG 2661834 36 100.0 30 .................................... TGTAAATGCGTTTAAATCGATGGGAAGCGC 2661768 36 100.0 30 .................................... ACACGTGTGGAAGAAGAGGGCTCTGACGCT 2661702 36 100.0 30 .................................... GTATGAAACGGTTAAATGGATCTCTATAGC 2661636 36 100.0 30 .................................... TTTAATGATTTTCTTTTGCGCGCCGTTGGT 2661570 36 100.0 30 .................................... GAATTTTTTTGTAAGATCGACAACTTTTTC 2661504 36 100.0 30 .................................... TTGATAATGATAAGGCTGTACGGATTATTC 2661438 36 100.0 30 .................................... TAACAGTGTATTTCTATTGCTCGGTGTGTT 2661372 36 100.0 30 .................................... TGGAGATAACGAAGAGTAAAGCGAGGCAGC 2661306 36 100.0 30 .................................... GCGTTGAACCAGAAGGTGGGAAAGAAACAC 2661240 36 100.0 30 .................................... TGGTAATTTAGTATCTATTACGGCTGGGAA 2661174 36 100.0 30 .................................... AGTTCATGCAGATGTTCCAACAGACTATGA 2661108 36 100.0 30 .................................... AACAGCTCGGTTCACAGCCCAAACAGGCGA 2661042 36 100.0 31 .................................... TAGCATCCCTTTGTTGAAAACATAGTCTGAA 2660975 36 100.0 30 .................................... TTAAATTTCCCTTCTAACACTATCTATCAA 2660909 36 100.0 30 .................................... ACGTGATGGTCCTTGGAAAAGGAGATTACT 2660843 36 100.0 30 .................................... TAGTTATTTGCTTAGAAATGTCATCCATCA 2660777 36 100.0 30 .................................... CTAGAAGCTTTGACATTAATATTACGCTTA 2660711 36 100.0 30 .................................... AAATAATTTTTTTGATCATGTTGCAACAGC 2660645 36 100.0 30 .................................... TGCAATATTGTCTGGATCTTTTTTCTTGTT 2660579 36 100.0 30 .................................... AGTTAGATAGATAAACAAACTAAACAAAGG 2660513 36 100.0 30 .................................... TAGTTTTTCTTCGTCCTCTAAACGCAAGCT 2660447 36 100.0 30 .................................... TGTCTGAATGTAGTTGATATCTTTAACTTG 2660381 36 72.2 0 .........A..CA.....C.....A.C.A..C.TA | ========== ====== ====== ====== ==================================== =============================== ================== 31 36 99.1 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAGCTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GAGACAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAAACTATCTACATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAAGGACGGAGAAAAGTTTCCTCATCTCTATATATACTAGAGTGGCTTAGACTTCTTAAATCCGAATTTTGAAATGAATGTTGACCAAGATAAAGATATAAATAAATTGTTTCCCTATTCAATTCGTTTCAACTCAACTTGCAAATTTCAAGTTGCTACAAGCAAAGGGGATATACCGTTGAAAGTGGAGGAGCAAAATAATTGTTACGAGACCAAAAGTTTAAAAATTTTATATGATTATATTCTAAATGCGAGTAAAAATGGTGACACGCTTGAACTATATACTGTTTGGACAGCGAGAAAGATTTACCGTTAACGCACAAACCAGAACTGCTTTAACTATCGGAAATCTAGTTTTAAGTGACAGAGAGCTATTAATAATTAAAAGTGAGACAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //