Array 1 429226-429723 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024597.1 Porphyromonas gingivalis strain KCOM 2796 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 429226 36 100.0 30 .................................... AACACCATACGGTTTGCTTCCGATGAATTG 429292 36 100.0 30 .................................... AGCCACCTTCTCCTCTGTCATTCCTCCCTT 429358 36 100.0 30 .................................... GTTGTAGGGGAAATGGCTAACTCTAATATC 429424 36 100.0 30 .................................... TATTACTCATCATTTTGGTAAAGATTCTGG 429490 36 100.0 30 .................................... TTCGTACTGAATATGGGTAAGCTGTATTCG 429556 36 100.0 30 .................................... TGTAAGTTTTGTTAAATCTGATTGTATTGT 429622 36 100.0 30 .................................... TATCATGTAAATAGAAGTGACAATCTTTGC 429688 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 100.0 30 GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Left flank : AATACATTGGCGTTTTCTTACGCCGAACTGACGTTATATATAAATCGATTGCGATAAATATATAGATTGTAAGCCCGATTTGATATAAATCGGACACCTCGAAAGGCCTTTAGGGGAGGTATAAATAAAGAGGCACCCACCGAGTTCGTGCAGGAACTCGGTGGGTGCCTCATCTATTTCGAAGGGGTACGAAACGGCTCTCAGGCTCTACCGCTCATACAGCAGGCTTGTATCAGCCATACGCAATGCCGGCATATAACCACACAGGCCGAACGAAACCGGCCGAATAAGAATGCAGGGAAGAGAGGAATCGGAGCACATATCTATCATTCATTTAGTCGTTTACAAAGTCATTCCATAGAAAGGGAAAGCACTCCCGGTACAAATTCACCGAAGAGGGGAGCAGCTTGTCCGCCTGCAAATGTAGCGAAAAAGCCCAACGAGGAAGAATCCCCACACTACTGCACATTCCAACGCCCAAGCCACCAATCAAGAATCAT # Right flank : CTACCCCCATCGAATTTGAAACCGATTGAGAAGTCATCATTCCACAGAAAGTGAGTGACGGTAAGGCTTTGGAGCCACTGCAAGCCGGCGAAAAACAGTCTGTCATCATCATTTTAGTGGGATTTTAGGATTGAAAAAATGACTCTCTACGGTCGGGTTTATGCTATTTTCTCTCAAAAAATCATTCCTGTGCTCCTGCCGGTTCGCACTCAAAAGTTCAACGTTCGCTTCTTCAGTGCGATGGCTTCTCTAACGGTTTGGGTAAGCTCCTGATAAATGCTGATCATCCGTTCGGCCGTTTCGGGCTTGTTCATCACAATCCTCTCATCCGAGTTCTGCCTCTCCGAAAGCAAAAGACCGTAAACGATACTCCTATACTCAAAGATACGGGAAATAATCTCTTTAGACAAGAAAATACCGTTCCCATTCTTATAAAATTCGTCCGTCAGTTCGGACAGGAATCCACGGATGCAGGCCGGCCTGAAATAATAGGTTTTCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 1555265-1555766 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024597.1 Porphyromonas gingivalis strain KCOM 2796 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 1555265 46 100.0 30 .............................................. AAAGCTCTCCCTATTGAAGAGCAGCTATGA 1555341 46 100.0 30 .............................................. AGCGAACGGGACGGCATTTTCGCAGGCAGC 1555417 46 100.0 30 .............................................. GTTGGTTAGTAGCACAGTTTCTGTGCTACT 1555493 46 100.0 30 .............................................. CACCTTCATCAGACAAAGAAGCGTTGTAAG 1555569 46 100.0 30 .............................................. GTTGGTTAGTAGCACAGTTTCTGTGCTACT 1555645 46 100.0 30 .............................................. GGTGATGTTATTGAATTAGATGGAATAAAA 1555721 46 91.3 0 .................C.T...............T......A... | ========== ====== ====== ====== ============================================== ============================== ================== 7 46 98.8 30 GCTGTGCGTTGCAACAAAAATACTAAATCTGAAAGCTATTCCCAGT # Left flank : TTTAGTGTTGAGTTGTTTATATTGGTCAAAAGCCATTTGCATGGCATCGTAAGCAATTGGATAATCGGTTGAAACTGCATTGCTAATTGATCCACTTGCCAAAATGTGAGCAATTCTTTTTCATCTACGTGTAAAAAACAAGCAAGTTGTAAAACTTGTTCTTTCTTCGCTCGGCGTTCTCCTCGTTCAATTTTACTATACAAACCTGAATCAATTTCAAGAACAGCAGACATTTGCCGTTGTCGTAAATCGTTCTTTACTCGTAGTTGTTTAAGTCTATTCGCGAATAACATCATAACATTTTATGTCTTGACAAATAATGTACAAAATTACAACTTTTTCTTAAGATAACGAAATAATTTGGCATGTTTTTCACTAAAAAAATGCACAAATAAGAGCAAAAAAGAGAAAGATAATGTTTTTGCTAAAATATTATTTTGTTGATATTCAGTTGATTATTTGTTTTTGATTTCTTTTGTTTTCGGTGTTTATTTGGTTGT # Right flank : TAGGCCAGCTGGGGTGTGACGGGGTATAACGTCTATGACTACGAAAAAGACGGGAAAACTTACAGAGTCGGGTTCGAGGTAATAGAGAAAGAGGCTGCGAGGTGGAAGCAGCCGTATTATGTAAAAAAGAAAAACTGATCAGGGTCAGTTACGTGCTAAAAAAATCGCCCGAATTCGCGTCCCTAATCAACTTTCTGTACTGCAAATATAAACAAAGTTTCTGAAGCTGTGTTGCAACAACATTACTAAATCTGAAAGCTATTCCCTGTGAAAAAAGGGAGACCACGAAAATAATAATCTGCTCAAAAATCATGCGCCAAAAAAGTTTTCAACAACGAAGACGAGTTTGGAACGATTCCAAATAAGTATCTGTAGAGAGGAGAAAAGCAAGGGAAAAGTGCAGGGAAAAGGAACTGCCATAGATCGAAATTCCACTTAAAACAAGTCGGACAACAATCTGTATATAAACCATTTTCAATTTGTATACAAATCGTTTTCAT # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTGCGTTGCAACAAAAATACTAAATCTGAAAGCTATTCCCAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.87%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA //