Array 1 51698-52813 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV789044.1 Aerococcus sp. HMSC06H08 Scaffold793, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 51698 28 100.0 33 ............................ CAGAATTCTTCTAGCAAAATTTGGAGTCAAAGG 51759 28 100.0 33 ............................ TGCTTAGGGGAATAGACCTGAACCAAGAGTACG 51820 28 100.0 33 ............................ CTTTGTCAGTAAGACGGCGGATAGCTATCGTCC 51881 28 100.0 33 ............................ CTGGTTTCTCGTTGGTTCTTTATACAAAAGAGC 51942 28 100.0 33 ............................ CTGAGTTTTGTTCAGCCTTCTCCACAGCAGTTG 52003 28 100.0 33 ............................ CCGGAAGCTTGCACAATGGCTGAAAGAAAAAGG 52064 28 100.0 33 ............................ CCATGTCATACGATCATCCTCTCGCCTTCTTTG 52125 28 100.0 23 ............................ TCANNNNNNNNNNNNNNNNNNNN Deletion [52176] 52176 28 100.0 33 ............................ TCAAGGCGGCTATCTGATGATAGGTCTGCCGAG 52237 28 100.0 33 ............................ TCGAAAATCACTTCTTGTCTTCTACTCATTTTC 52298 28 100.0 33 ............................ CTTGGAGTTAAACTTCAAGAACTCACTCGGAAA 52359 28 100.0 33 ............................ CCGCCAAAGTTCCGGTCAAAGCTCATCCCACAG 52420 28 100.0 33 ............................ CATTTCTGGCCCTGTTTCAGTATGGACAATCCA 52481 28 100.0 33 ............................ TATAAGGAGGAGCCCATGACAGAAATCATCTGC 52542 28 100.0 33 ............................ TGACAGACTTTGACCCGCTTATAGACACAGTGG 52603 28 100.0 33 ............................ CTACGTCCATTCTTACTTCGAGTCTCCAGAAGC 52664 28 85.7 33 ...........GC.A.....A....... TACTAAGTTTTCTTTGGCATATCCTTGTGTGAT 52725 28 92.9 33 ...........G..A............. CATCAAAGTAGCGCGCCACTTCTTCGCTGTGGG 52786 28 96.4 0 .....................A...... | ========== ====== ====== ====== ============================ ================================= ================== 19 28 98.7 32 CTTCTTCCCGCATACGCGGGGGTGATCC # Left flank : ACAAGAGAAAGAAGTCTTTCATCATTTAATAGCTGAGCGGACAGTTCCCATGCAGATTCAAAAACTAACGGGGATTAGCCAGCGAAAAATAGATGAAGAGGGGATAGATGAGAATGAAGTGTTAATAGATCTTCTTCAATTTATTGAAAATCAGGTTATCGTTGGATACAATATTAATTTTGACATTAGCTTTATTAATAAGCAGCTGAAAAAGATGGGTCAAGAAAATTTATCTAATCCTATCTTAGATTTAAGGACTATTGTAAAAAAAGAAAATATGTTCTTAAAAAATTATCAATTACAGACAGTCCTACTGAGTTATGGAATTGATAAAAAAGTTCCCCATCGAGCTTTGGGGGATGTCGAATTAATAGCAGAGCTAATTTCAAAAGTGAATAAATTTCCGACTTACTTGAAAAAGAAAGCCCGGTAATATAGGGATCCTTTAGTCTTCTTCCCGCATACGCGGGGGTGATNNNNNNNNNNNNNNNNNNNNTAGT # Right flank : CTGATTTAGGATTAGGATATTATATACTATGGAAAAGAGGTGTAAAAATGAATGATTTTATTTCTGATAAAGTTGTAGCTGAAAGATTAAAAGCTTTAAGAGAAGAAAAAGGCTACACGCAAAAAGATCTAGCTAATTTAATTAGTGCAAATTATGAAACAGTTCGGGGCTGGGATTATGGTAAGTCTTTGCCTAAGCATGAAATGCTGGCAAGATTAGCAAAGCTATATAATGTAAGTATAGATTACATACTGGGCCAAACTAATACTAAAGAAAGATATAAATAAAAAAGCCCATCTAATCGATGGACTTACTTATCATTAGTAACCAGCGTCATTAAATAGTCGGTCATGCTCAAGCCGTTCTTTTTGGCCTGGTCTTGTATCAGCTGCTTTTCTTGTGCGGTAAGTCCTAGCTTTAAAGACTTATCACGCTTGCGACCAGTAGCGGGGCGACCTCTTGGGCGTTTCTTTTCTTGGGGCATTCTTGTCACTTCTTTC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTTCCCGCATACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 67936-67664 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV789046.1 Aerococcus sp. HMSC06H08 Scaffold843, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 67935 28 100.0 33 ............................ CTTAAGAAGGAGAAATAGCGATGAGAAAACTAG 67874 28 100.0 33 ............................ TGTGCGGACTATCGTAGAGCAGTACCCTTCAGC 67813 28 100.0 33 ............................ CAATCGTTTGGATTCTCAAACTGCCACTCTTAC 67752 28 100.0 33 ............................ TCTTTGGGCAACTACCGCTCAACGGATAAGGTG 67691 28 96.4 0 ............T............... | ========== ====== ====== ====== ============================ ================================= ================== 5 28 99.3 33 CTTCTTCCCGCACACGCGGGGGTGATCC # Left flank : TTTTGGCTTGATCGGTGTCATCGCGACGATGATCGACTTTGCCTTGTTAACTGCCCTCACCGAGTGGGGCCATGTCCACTACCTGCTATCAGCCGGGATTGCTTTCGTGGTCGCCACGATCTTTAATTATTTGGCCTCCATGCGCTATGTTTTCGTGAGCCGGTTTTCCAAGGAAGAGCGAATCCAGGAATTAGTCTTGTTTGTGACCTTGTCAGTTGTCGGGCTCATCCTCAACCAGGTCTTTATGTGGGCCTTCGTTGAGAAACTAGGCCTCTTCTACCTCCTAGCCAAAGTCCTTGCGACTGTCCTCGTGATGGCCTGGAACTTTATCTCCCGAAAATTGTGGATCGAATAAGACGCTAGGAAATCAGTCACTAGGCATGGCTTATCTTGGATAAAAGTGGGGAAATGCCTTATAGTAAGTGTAGGGGAAATGATAAAGTGAATGAAAACGGTCCAGGGATCGAATAAAAAATTTGATTTTATCAACTTCTTTTAGT # Right flank : TAACCAGCTAACAAAGTGTGGAAAATTTTTGCCAGCTTCTTCCCTCTTTACCGGCTATATGTATTAAATTTGACCCTGTAAGTTTAAGAAGGGAGCCCATATGTTACGAGCCTATCCTGCCTTGTTTTACTATAGTCCTGATGAAAGCAATATTCCCTTTTCAATTGTATTTCCCGATATTCCCAGAGCGATCACTCAAGGGGCGGATATTCCTGATGCGCTCTATATGGCGAGCGACTGCCTGGGCCTTCATTTAGTAGATTATTTAGATCGTGGGCAAGCTTTACCTGAGCCGACTTCAATCAATACCTTATCCTTAGAAGCCTTCTTGCCTGACGACGAGGGCTTTCGCTTTGATCCTGACCGCTCCTTTGTCTCCATGGTTTTGGTCGACCTCGATGACTACAGGAGCTAAGAGAGGATTTCTTCTCGGAAGTGAAGAGCTTTTATTTTAAAGCGGTCCAAGTTTTGATACAATAAGATTAAAATAAGTAAGTGAA # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTTCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 83911-82973 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV789046.1 Aerococcus sp. HMSC06H08 Scaffold843, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 83910 28 96.4 33 N........................... TTATTGACCACAAGGAAATGTTTATCGTGCGAG 83849 28 100.0 33 ............................ TGGGAGCATGGTCGAATCAGCTTATCCAAAGAA 83788 28 100.0 33 ............................ CCTGAGCTGCCCTTTACCTTTTTCGTACTTCTT 83727 28 100.0 33 ............................ CCTAAGACGTGTTTTTGCATTTCTGTCATAGAT 83666 28 100.0 28 ............................ TTATNNNNNNNNNNNNNNNNNNNNTAGT 83610 28 100.0 33 ............................ TTTGGACTTGCCGACAAGCTTTTCAAGCTTGGT 83549 28 100.0 33 ............................ TGGAGTTTCGTGATGGCCAGTGGAAGCGCTCAG 83488 28 100.0 33 ............................ TTATTAAGTGTTTCAATAAAAAAATACACGAAA 83427 28 100.0 33 ............................ TTCTAAGTGTGCGACTAATACTTTAGTCACTAG 83366 28 100.0 33 ............................ TCAATATATGACCTGTACGGAGAAGGCTATCGT 83305 28 100.0 33 ............................ TAGGATATGCAAAAGACGCACATCTATTGTGTG 83244 28 100.0 33 ............................ TTGCAGGCGGCACTGAATGGATAAAATATTATT 83183 28 100.0 33 ............................ TACATCCGCTTTAGCAAGCGAAAGCTCATCAGC 83122 28 96.4 33 ....................A....... TGGTTTGTTGAGCTTTCCAAGTTGCCCCATGAT 83061 28 96.4 33 ...T........................ TCAAGCATTTTTCAAGATTACGAAGATCCTGTC 83000 28 75.0 0 .......T........T.....ATC.TA | ========== ====== ====== ====== ============================ ================================= ================== 16 28 97.8 33 CTTCTTCCCGCATACGCGGGGGTGATCC # Left flank : GAGCCGGGTTGAGAAAATGGAACTCACTAAGAACAGCTTAGGCGAAGGAGAGAAAGTCTTAATTATTGATGATTTCTTGAATGGTGGCGGGACAATCACAGGCATGTTGAGCATGACCAGAGAATTCAATGCGACCTGTGTGGGCATTTGTGTCCTAGCTGAAGTTCAAAACCCTGAGCGACAAGTGCCCTTCGACTACCAATCCCTCATGCAAGTCGTCAAATCACAAGATAACACCCAACTCGTCGAAGTCCTACCTGGTAGTATCTTTGATGATAAATAATAAATTAATCGAAGCTCCTGAGTCGCAAGCACTGAGGAGTTTTTTTGAGGGTTTTTCCTAGATAAAATGATAAGAATCATTTATAGTGATTGTAGCAAGCAAATTATTTCAAAGTGAATGAAAACGGCCGAGGGATCGAATAAGAAGCTTGATTTAATCAGCTTTTTTTAGTCTTCTTCCCGCATACGCGGGGGTGATNNNNNNNNNNNNNNNNNNN # Right flank : GATAACGACCAAAAAGAAAAAGAAGCCCAATCCAACGATTAAAGCTTCTTCTGTACCAGGGGAGGTAACAGCTCCCCTCGGTACTTCTATTATAGCACATTCATAGGAGGTTCAAATTATGTCAGCAGTTACAATTGTCTTACTCGCATTATTGGTTTTAGCTACTGTTGTCGGTTTAGGATTAACCGTTTACTCAACAATTAGAGATGAAAAGAAATATGGAAGAAAATAACTTTATCTTAGTCCTGCCATTCATTATCGTCTCTAATATGGGATTTAGCATTGGGAAGAATATCGGTGCTACTCCGCTCTGATCAATCGTCTTGCCAATAGAGAATGTAAAGTTGAAAATATGACGTCAGGTTTCTTCCCGCATACGCGGGTGATCTCACAAGGCGCACAAGATCAGATACAAGTTCAAGCTTCTTCCCACGCAAGCGGGGAAGACTCCAAGAAAAGAATATCATTCAGCAATACGAGAACACGAAAAAAGAGAAATG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTTCCCGCATACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //