Array 1 24198-22182 **** Predicted by CRISPRDetect 2.4 *** >NZ_FEZT01000011.1 Neisseria meningitidis strain 2842STDY5881378, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 24197 36 97.2 30 ........G........................... TTCCCATCTTACTCTCCCCTTGCCACTCAA 24131 36 100.0 30 .................................... CTCAACATTGTTGTAATCTGACCGCAACGC 24065 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 23999 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 23933 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 23867 36 100.0 30 .................................... CTTTTCAATGTTAACTATTTTGCAAAGAAT 23801 36 100.0 30 .................................... ACTCCCTGTTTATCGGTTTTTCAGCTTAAA 23735 36 100.0 30 .................................... ATAAGATGGGAAAATTACCATGAGGCCTGC 23669 36 100.0 30 .................................... AACCGTCTGCACCGTAAATGTAATCAACTT 23603 36 100.0 30 .................................... ACGGCATTGTTTATAGATTCCTCACATATT 23537 36 100.0 30 .................................... CTGCGAACATGGCGACTCCTGTTTATTTAA 23471 36 100.0 30 .................................... ATGAGATTTGCCGTCTGCTGTTTGACGACT 23405 36 100.0 30 .................................... ATGTACATGATTTGGCAGGATGGGCATTGG 23339 36 100.0 30 .................................... TTTCTCTGCCTGTATCAGGTTGCACAGGCG 23273 36 100.0 30 .................................... CGGCATCTACGACGAGGACGAGGCACAGCG 23207 36 100.0 30 .................................... CTAGCTAGTTAGTTATGCAATCGGTAAGTC 23141 36 100.0 30 .................................... TGGATTTTGCCGCCGACGCAGAAAGCTGCA 23075 36 100.0 30 .................................... TTTGCTTCCTTTTAAAACTGTTTTGACAGG 23009 36 100.0 30 .................................... GGCTCGAAGTACCGCCCGTTATCCGCGCAG 22943 36 100.0 30 .................................... TTACTTTCTTGGTTGGTCTTCTTGATGTTT 22877 36 100.0 30 .................................... CTATTGCGTCAGCAGCAGCAAGAAGTCCGT 22811 36 100.0 30 .................................... CTATTGCGTCAGCAGCAGCAAGAAGTCCGT 22745 36 100.0 30 .................................... CACGGCAGGCAGAGCGTTCACGCTCAATTT 22679 36 100.0 30 .................................... TACAACCCAATCGGACAATACCCGAAGCAG 22613 36 100.0 30 .................................... AAAACTTTTTAGGGGGTCGGAAAAAAATAC 22547 36 100.0 30 .................................... AAGATGCGAAAATTAGCGCGGGACAGTGGT 22481 36 100.0 30 .................................... TTTTTTATTTTAATTTTTTATCCCCCAATG 22415 36 100.0 30 .................................... AGTTTTTAAATTTTTGATTTTGATTTTTTT 22349 36 100.0 30 .................................... GATTGAGATTTTCAACGAGCAATGCTTTGA 22283 36 100.0 30 .................................... TGCCAGCCCGGGCGATTTCGAGGCGGTCAA 22217 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 31 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGATATTGTGCTAGAAGAAACAGAAAACGAGCAGAACAATGATTTCAGGCTGCCTGAAAATTTAGAACACTTTGATATTCAAATAGAAAATGTTTCTTTTCGCTATGCTGAAAATGAACCATACATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //