Array 1 63681-62799 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADQTZ010000012.1 Corynebacterium diphtheriae bv. gravis strain 06-18 NODE_12_length_63680_cov_43.833179, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 63680 29 96.6 32 ............................G GAGACTATCGCCTGGAGAGTCCAGTGTGATGG 63619 29 100.0 33 ............................. GCACCCCCCCACTACGTGGCCACCATCCTAGGC 63557 29 96.6 32 ............................G GAGACTATCGCCTGGAGAGTCCAGTGTGATGG 63496 29 100.0 33 ............................. GCACCCCCCCACTACGTGGCCACCATCCTAGGC 63434 29 96.6 32 ............................G CCCAAAGGCGGCAACAAATCGACCAGTGCAAC 63373 29 96.6 29 ............................G TCTTTTGTCAGGAAACCAGCCGAGGTCGT 63315 29 100.0 32 ............................. CAGCAACCCGTCCCCAGATCGACCGCTGTCGT 63254 29 100.0 32 ............................. GATCACCGGCTAGGAATCCAATAATCACCATG 63193 29 100.0 32 ............................. CGCGTCGAGATCGTCGGGATCAACATCAGGAC 63132 29 100.0 32 ............................. AAGCGTATGGGATGGTCAGCAGTTCTGGGACT 63071 29 96.6 32 ............................G GTTAAAGAGCTAATCGGCATAGACTTCGACGA 63010 29 100.0 32 ............................. CAGCCCAGCCAAAAACGAAGTCGACGAAATCG 62949 29 100.0 32 ............................. ACATGGCGGGGCCTATATGAAAGGATCGTTAC 62888 29 100.0 32 ............................. ATTGAGGGACAGCTTAAGGCCCCATCTACCGC 62827 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 15 29 98.9 32 GTTTTCCCCGCACCAGCGGGGATGAGCCC # Left flank : | # Right flank : AGGGACTTTGAGAACTGGACCGCCGTGATTCCTTGCACTAGCAGGGTGGATGAATCTTTGTTGAAGAACGGGTTTTGGGATCTGTGTTTTCATTCAGAGAAATCAGTAAATGATGGGTCTACTAAAAAATTTTGAAAAAATTAACTTTTAATATCTATAAGGTGTATTCTGTGGAGAAAGTGCTTCCTAAGTTGGGAGTTTTAAAACAATCAGGAAGGAGTTGGTGGTGGCTTCGTTACTGGAGATCCGCTGGATTCTGGCTCTTGATACTCAAGGTAACCAGATTTCAGTTGGAATACGAGATATTTTCGCGGGGGAGGTGCAGGTTGCCTATATTCAGGGGGAGTCCCCAGCTCAAGATTATGCTGTGATGCGGCTTTTGCTGGCTATTTTCTGGCGTGCCCATTCCATGGATATCGACATGGACGTGGAACCTTTTGATTTTCTTGAATGGTTCAACAAGATGAGACGTCGTCTTGCTCGAAAAAGGAAAGATCAGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACCAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2081-38 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADQTZ010000020.1 Corynebacterium diphtheriae bv. gravis strain 06-18 NODE_20_length_19845_cov_45.537123, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2080 29 100.0 32 ............................. TCCGACTTCTTCCGCTCTTCCTCACGCCGATT 2019 29 100.0 32 ............................. CGTTTTTTCTTTAACGAAGGAAAGAAAATTGC 1958 29 100.0 32 ............................. CATGTTCTATGTCAAAGACCTTTACGAGCAAA 1897 29 100.0 32 ............................. GTCTGCATGCTCACCAACACCGATAGCTCGAA 1836 29 100.0 32 ............................. GGCGCGCCGGGTGTTTCTGGCTTCGGCTCGTC 1775 29 100.0 32 ............................. GATCCCAAATTCCTAGACTCAATCTTTTGATT 1714 29 96.6 32 ............................G CATGGGGGGGTAGGCGGGCGCAAAAGCTGGTG 1653 29 96.6 32 ............................G AGGATGACCCCGCCGGTTGGATCTGGGGGAGG 1592 29 100.0 32 ............................. TCTCTGTGGTCGCGAATATTCACACCGAATAC 1531 29 96.6 32 ............................G CATGCTGGACACCGGCGACCGACACCCCCGCA 1470 29 96.6 33 ............................A GAATCCGCGGTTACCGTACCCGGCTTACTCAGC 1408 29 100.0 32 ............................. GCGAGCAACCGGCATGCCGGCAGCGTCGACAC 1347 29 100.0 32 ............................. GAGAAGCTATCTTATGGGCGGAACGCTACGCC 1286 29 100.0 32 ............................. CGTCGTCTCTTCTTCTGCTTCCACCTTTACCG 1225 29 96.6 32 ............................G GGGGTGGAGAATCATGGCTAAACGTGAGCTTC 1164 29 96.6 32 ............................T GGGAATGTCACCGCGCTTACCCCTCCACACAG 1103 29 96.6 32 ............................G TGCAACCCTGCCGGCCGCTGAGGCTGCTAAAA 1042 29 100.0 32 ............................. ACCGCAAATAACCCATAGGGCTGGCCACTTGG 981 29 100.0 32 ............................. ACGGCAGTGGGTGCATGTATCCCCACTGGGGG 920 29 96.6 32 ............................G CCTGCAACCGCCTGCGATATACCCGGATAGTT 859 29 100.0 32 ............................. AAGACACCTATTATAACTGTTGCCCCGCGTCT 798 29 96.6 32 ............................G CGGATTGAGGTGGTCTCGAAGCTGCCATCCAG 737 29 96.6 32 ............................G CTTAGCGCCGCTCGCGCCAAGCTGAATGCCGC 676 29 100.0 32 ............................. GCTGGATCAGTCATTAATACTTTCATCTCATC 615 29 100.0 32 ............................. CCCACGTGTATTACAGCAGCAACCTGCACCAC 554 29 100.0 32 ............................. CGCGATGGCACTGCGGTAATCGTCGGTGCTGG 493 29 100.0 32 ............................. TTATCCCCCAGTGCCCAGACGATGACACGCTA 432 29 100.0 32 ............................. CTGCAAGTACTACCTCGGAATCGTCATGCTAG 371 29 100.0 32 ............................. ACCCAACTCTGCAGCCATCGCCGCAGCAGAAC 310 29 96.6 32 ............................G TTTCGAGATCAAAACATCCCGTTCTTTCAGCT 249 29 100.0 32 ............................. AATGGAAGATGGCCGCGTAATAGTGAACCTAC 188 29 100.0 32 ............................. TGGGAATGGATGGCTTTTACGATACAAAGGCA 127 29 96.6 32 ............................G GAGACTATCGCCTGGAGAGTCCAGTGTGATGG 66 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 34 29 98.8 32 GTTTTCCCCGCACCAGCGGGGATGAGCCC # Left flank : CTTACTTGGAAAGAAGCTGAGGCATTGGCTGGAAACACAGTGCGCCTGCCAGCCCGAATGACACGCAGAGATTCGGATTTTAATGCCGTTATTGATTCGCTCGAAGCACAAACACCACCAGAATGGCAACGATCCGGTTTGCTTAAAGGCCAAGTTGCGTTGCTTTTCGACGAAAGAGGAGAGGCTCGTGTAGGTCGATTCCTAGTGCGTTATACCAATGAACGTGGATTAGAGGTGGAGGTCTGCCCAAAGGAAGACGCGTAAAAGGAAACCCCGCTGGTGCGGGGAAGTATGCCTATGTAAATCTTGTAGAGATATTAAAAAGGCTCATCCCTGATCGCAGGGAACAATGCCAGCCTATGGCTAGAAGAAAGGACTAAGCAAATTTGGGTGAATGGCTGATCCTAAAACAGTAGAAATAAAGATGAAGCAGAAAAATTGCTGAAACAAAGTTATATGTAATAAGCTCTAACTGGCTCTAAACGTGCAGCTTGATAAGT # Right flank : CGCACCCCCCCACTACGTGGCCACCATCCTAGGCGTTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACCAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [21.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //