Array 1 875406-869852 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033189.1 Xanthomonas oryzae pv. oryzae strain PXO421 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 875405 31 100.0 35 ............................... TGAAGGTCTGACCCCTGTGGGTTGATCCCTGATCC 875339 31 100.0 34 ............................... TTTCATCCGCTGCTTGTACAGCGCTACAACAGCA 875274 31 100.0 34 ............................... AGCCGCTGCCTGAGTGGCAGGGCTCTGTGCCAGG 875209 31 100.0 35 ............................... TTCAACAATTTTGTGAACTCGTTCAGCAAGTACCT 875143 31 100.0 37 ............................... AGTGGCAGAGTATATGCAGACATCCCGCCAGATTCGG 875075 31 100.0 37 ............................... CAGGCATCGGTCGGTCGCTGGAATGACAGTGGTGCCC 875007 31 100.0 35 ............................... TCGCGAATAGGCGCGGTCCAGGGCCACGCAGTGGC 874941 31 100.0 34 ............................... ATCTACAAGGTCCGGAAGGAAAAGAAGAGGATTA 874876 31 100.0 35 ............................... TTGGATGGTCAGCCACCAGCTGTCCTGCGGGACCC 874810 31 100.0 34 ............................... ATGATCAGTCTTCGTCTTAAGCCCAAACGGGACA 874745 31 100.0 35 ............................... ATCGTGTGCGCAATGACATGCGTGGTGTCAGTCTT 874679 31 100.0 34 ............................... GCAGATGCTGGACCTGCATGAGCAAGGCAAGCTG 874614 31 100.0 35 ............................... TTCGTCGTTGTGCTGCTAAAGGTCAGCTGCACCCC 874548 31 100.0 35 ............................... TTAACAATGTACCTGTCATCGCCATCACCGTGGAC 874482 31 100.0 36 ............................... CGCAGGAGGCACTGCCATTGCAACGGGGACTGGCTC 874415 31 100.0 35 ............................... CAGTGTACAGCTGAAGCTTTAGGGTCGTGTGCGTC 874349 31 100.0 35 ............................... TAGACAACCATCCCCGCCTCTGGCCTAGCCATGCA 874283 31 100.0 34 ............................... CGCCGGCACATGGGCGATGGTGAGCCATGAGGTG 874218 31 100.0 33 ............................... TCAAAGGGGATGCCACTCAAAGACCAGCAGGCC 874154 31 100.0 34 ............................... CAGTCGCAACAGATGGATTAGCTGCCGTGATGGC 874089 31 100.0 35 ............................... CGCCCCCAGCTACCAGACATGCTGACGCCACTGAG 874023 31 100.0 35 ............................... TGTCGTGAAATTTGAAAAGGTGCCACCTGGGCCAC 873957 31 100.0 34 ............................... TCAAATACAAGCGCACCTGTTGGGCCAAATACTC 873892 31 100.0 35 ............................... TTCTCTACACGCGCCTCGACCTTGTCGTAGTCCTG 873826 31 100.0 35 ............................... GGGGTCGTCAGTGCACCAGCAGAGCCAGCAGCATC 873760 31 100.0 37 ............................... ACTGGCGACTCAAGCACTTGCAGGAGAGCATGCGCCC 873692 31 100.0 34 ............................... ATGGGTGCCTGCCTGTGCCAGTATGTATGCATGT 873627 31 100.0 34 ............................... AAGCCAGCCGCCGACAGTGTAAGGGCAGACCCAC 873562 31 100.0 34 ............................... GTTGAAAACTAGCATGTCACCAAATCCCGAGCGT 873497 31 100.0 34 ............................... ACCCACAGTCAGCAATATTGCCTGCTCAACAGTC 873432 31 100.0 33 ............................... ATGGGTGCCTGCCTGTGCCAGTATGTATGCATG 873368 31 100.0 35 ............................... GGTTGCCAGTGAGGTCTCGCAGATGATCCCTCAAC 873302 31 100.0 34 ............................... CAGCTTAGCGGTAATATCAGTCATTTTATTGGTG 873237 31 100.0 36 ............................... GACCAACAAATTGCCAAGGCTGATATCAGACGCAAC 873170 31 100.0 34 ............................... CCAGCAGGACTTGACCGCATGGTCTTTGCAGCTG 873105 31 100.0 37 ............................... CAATCAGATGCTTGAGCAGTACCCAACCCGTCTTAAC 873037 31 96.8 35 ...................T........... TTGGTCTTAAGCCCAAACGGCACAGCATTGTGACC 872971 31 100.0 35 ............................... AGGCTGTCGGTGACATTGGCCAGGGTGGCTTCCAG 872905 31 100.0 33 ............................... CAAGTGTCCTTACAACGGTGAGGGCTGTGTCTG 872841 31 100.0 34 ............................... TCCTTGCGGTATTTGTAAATGAACTCCTGCACCC 872776 31 100.0 36 ............................... ACGTTGTCCAGCATGTCAAAGACCACCAGGCCGGCA 872709 31 100.0 35 ............................... TCGCTCACGGACACGGAGTCATTAAACGTCATAAA 872643 31 100.0 35 ............................... TACCTGTGGCGCGTGCGTATCACCGACCGCGACGG 872577 31 100.0 37 ............................... TGTCAATGTGATGCTGTAACAGGTCCGCCCTTAGCCG 872509 31 100.0 35 ............................... AACACAGTTAGGCACATATGCCAGTATCTTGACCA 872443 31 100.0 34 ............................... ATGACGGCCAACAAGGTGCGTCGCCCGGACGGCG 872378 31 100.0 34 ............................... CGGTCACGACCACGAGCCCTGGGCGTTTTTCGCA 872313 31 100.0 35 ............................... GATGCGCGCCTCTGGAACGAGGTCCTACCCCGCTG 872247 31 100.0 35 ............................... TCTCACGGCCACTGCCGACTCGTATGTCATGGTCC 872181 31 100.0 34 ............................... CATTGGTGCCTGCCTGTGCCAGTATGTATGCATG 872116 31 100.0 35 ............................... AATCGAGATGAGGCGGAGGCCCGGGCACGTGTGGA 872050 31 100.0 35 ............................... AAGCAATGGCGCTCGGCCAGCCTCTACAGATCCGC 871984 31 100.0 34 ............................... GTCGCCGGGTACCAAGCGGCAAACCTCACACCAC 871919 31 100.0 35 ............................... GCCACCCCCGACGGCCATCACACCGTCAAGGGAAA 871853 31 100.0 35 ............................... TTCGGCGTCCCGCCGAGCATGATTGGGCACAGCAG 871787 31 100.0 36 ............................... TTGACAGATGATCAGTATGACAGCTTTGCCAAGAAG 871720 31 100.0 34 ............................... GTGAAATACTCGCTCGCAATCGACTTGATGAGCG 871655 31 100.0 35 ............................... CGCTACGATCCGGCATACGGGACGTAGGGTTGCAC 871589 31 100.0 36 ............................... ATCACGCGGACGAACAAGCCCTCATCGCGCGATCCG 871522 31 100.0 36 ............................... TCCCTCTGTTTGTTAATGTTCTCAACCTCTCTGGAA 871455 31 100.0 33 ............................... CAGCCCCGGCGTCGGCGGCCGCGTCGAACTCCT 871391 31 100.0 34 ............................... CTGGGGGATGTTGAGCATAAGACCAGCAAGGCTG 871326 31 100.0 35 ............................... GGGCATGACTAAACTCCTCGTTGGCGTTACGGAAA 871260 31 100.0 36 ............................... TTGTAAAGCTCAGACATGGGGGCACCCTCTCCGCCT 871193 31 100.0 35 ............................... CGACCTCTTTGAGAGTGTGTCACTGTACATCTGCA 871127 31 100.0 36 ............................... GTCGTGCAAGGCCCGCTGATCCAAGCCTGGCAGCGC 871060 31 100.0 35 ............................... TTCGGCGTGCCGCCATCAATGATTGGGCACAGCAG 870994 31 100.0 33 ............................... TGGCAAACGGTGGTAACTCGTCTGCTATTAGAC 870930 31 100.0 34 ............................... TGGCTCCGTTGGGTGGTTGGTAAAGCCATCGGAG 870865 31 100.0 34 ............................... CAATGGTTAGTGCACCTGGTCCTCGGCAACGCTC 870800 31 100.0 34 ............................... GCGCGGAGTATCGGCGCAGTACACACCGCTCCCG 870735 31 100.0 35 ............................... TGGATGCTGACGTTCGTGACTTGCGCGCCGCTGTC 870669 31 100.0 35 ............................... GGGCGCGGGGCGAGCGGGACGACCTGGATGCTCAT 870603 31 100.0 34 ............................... GTTCTATACGCGGAACGGCGCGGGCACGCTGCTG 870538 31 100.0 34 ............................... GTGGCCCACGTCGAGTCGCAGGCGAAACGACCGC 870473 31 100.0 35 ............................... AAGCTGACTAGCTCGAAGAGCCAAGCGGCGATGAC 870407 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 870341 31 100.0 33 ............................... ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG 870277 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 870210 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 870145 31 100.0 35 ............................... TTTGCGACGGTGTTCAACGGCGAGCAGATTGACGG 870079 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 870014 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 869947 31 100.0 34 ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA 869882 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 85 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATAACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGC # Right flank : ATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGGTAGGACCGTCGCTCCACCGAGACCAGATCATGGCCATGAATCGTGTGCAGTTCCAAGCCGGGCTGTCGTTGCCGGCGTTCCTCAAGTGGTGCCCAGCTTGCTGGCCGCCGCAGCCGCCAGCAAGCCGTGGTCCGAGCGGGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //