Array 1 21053-26144 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKFD01000004.1 Lacticaseibacillus paracasei strain FAM18099 FAM18099_scaffold_0004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 21053 28 100.0 33 ............................ TAAACGACCCATCAAACTTTAAGTTATGAAAAA 21114 28 100.0 33 ............................ TAAACGGATTAGGTTCATCGGTGATATGAATTT 21175 28 100.0 33 ............................ TGCACGATTTGATTTCATAACAGGTAAAACAGC 21236 28 100.0 33 ............................ CTATCCTTAACTGTTTATAAATGGGACGGATTG 21297 28 100.0 33 ............................ CGCCAATTGAGATTGGGGATGTAGTATTAATTC 21358 28 100.0 33 ............................ CATCGTTCCAAAATCCATTCCAGTCTTTTTGCG 21419 28 100.0 33 ............................ TAGGTGGTGCAACTGGTGTACTAGGGTCAACTA 21480 28 100.0 33 ............................ TTTACCGGAAAACATTAGTGGTATGGGTAACAA 21541 28 100.0 33 ............................ CAACCTATCCATTTGAACGTGAGAATTACACTA 21602 28 100.0 33 ............................ TAATCGAATATAAGATCGGCATCGCCATCAAAA 21663 28 100.0 33 ............................ CGAACGGCTGGTAATTTTTGGAACGGGCCTTCA 21724 28 100.0 33 ............................ TTGCTCCAGAGGCATCTTTCATTTTGGAAGCAG 21785 28 100.0 33 ............................ TGTATATCGATTGTGTGTAGGTTACCCCAGGAA 21846 28 100.0 33 ............................ CACGCCGTCATCACCGTTGATAGTGGCCGTAAT 21907 28 100.0 33 ............................ TAACCGCAAGGGAACGAATTGTACTACGCGAAA 21968 28 100.0 33 ............................ CGGTCCCGCAATCATTTTGGCCATTGGGGCTAT 22029 28 100.0 33 ............................ CGCTGTGATAGCAGGTGTTAAGTCCATGCTTGG 22090 28 100.0 33 ............................ CCAGCCCAACCAGTGTTAGGAGCCAGTAGAAGC 22151 28 100.0 33 ............................ TAATCAGTTACTTGAGAAAGTCGTTTCACAGCA 22212 28 100.0 33 ............................ CGGCCATGCTGAAGTCTTTCAAAGTTGTCAGAA 22273 28 100.0 33 ............................ TTAGATAGCTAACGTGGCTGTGACGGAGGCCGT 22334 28 100.0 33 ............................ TATTTGGGACGTACTCAAGCAACTCATCGAGTC 22395 28 100.0 33 ............................ TGGAGGTGACTATATGTGCTGAATTCTCTCGTT 22456 28 100.0 33 ............................ TAACTGACTTGCTAGTATTAGTTGCCGTTGTAA 22517 28 100.0 33 ............................ TGTCATGGAAGGTTCAGTCAAGTATGCCGATGA 22578 28 100.0 33 ............................ CTCATCAAAGCGATGAACAAACTTGATGAATTG 22639 28 100.0 33 ............................ CGCCTCCCTTATGGTGACATTATACACATAACA 22700 28 100.0 33 ............................ CCATAGAAAGAGGCACAACGACACTCGCACCGG 22761 28 100.0 33 ............................ TCAAACTTCGCCGCAAAAGTATTGTTCACATAG 22822 28 100.0 34 ............................ CTCCCATGTCTGAACAATTTGGTGGCGTGCCGTA 22884 28 100.0 33 ............................ TGCTCCATATCCCTTCGTCATTGTTGGCGATAT 22945 28 100.0 33 ............................ TCCCAGTCCATAGATTGCTGAAGAAACTAGTAA 23006 28 100.0 33 ............................ TGGCTCCCAATACGTTAACACTCATAGTTCTAT 23067 28 100.0 33 ............................ CGTTGTTGATAGCATGGTTGGCAAGGACAAGCT 23128 28 100.0 33 ............................ TGAATATTAGATCGTTTGAACTTGCTGACGGTA 23189 28 100.0 33 ............................ TAGCCTTTAGCCATTCGCTGACGGCAATAAGCC 23250 28 100.0 33 ............................ GGGGATGACTGTATGAACGAACGCAATGAAAAA 23311 28 100.0 33 ............................ TTTCATGGTGCCCTCCTTATTGCTGTGGAGCAA 23372 28 100.0 33 ............................ CTAATGTTACTGATATTTTTATCAAGCCATTTG 23433 28 100.0 33 ............................ CACTTTGTATTTTCCAGCCATTTCCCACTTCAC 23494 28 100.0 33 ............................ CGCTGTCTTGCCTCACGCACAGTTTCAGCAGCC 23555 28 100.0 33 ............................ TGGAGATCAAGATGAGTATTATGCATACGTTGG 23616 28 100.0 33 ............................ CGACTGATACTTCTCTGAACCGGTTCATTTGTG 23677 28 100.0 33 ............................ TGCCATTCCACAGTCCGCTGAAGAATGAAGCGA 23738 28 100.0 33 ............................ AGCACAGACGCCGAAGGGAAGCATCGTTGCTTT 23799 28 100.0 33 ............................ CGGCAACGGCACCTCTAACATCTGTATTACCAA 23860 28 100.0 33 ............................ TACCAGCATCCTCAGCAGTGAATGTGTCCTCAC 23921 28 100.0 33 ............................ CAAAAACCCCACAATGTCATCGTTTAACCAGTC 23982 28 100.0 33 ............................ CGCGTTGGGATTGATCCATGGGAGCTTATTCGG 24043 28 100.0 33 ............................ CGGTCCAAGTAGTGCCATCAATGCCGGTCCGTG 24104 28 100.0 33 ............................ CAAGGCGGCCAACTCCTTTTACGCCTACTGATG 24165 28 100.0 33 ............................ CAACTGTGCCCTCAACAGAGAACTCAACGTTTG 24226 28 100.0 33 ............................ TAAAATCAGAGATCACCCGACACACACAGCACT 24287 28 100.0 33 ............................ TAAAATCAGAGATCACCCGACACACACAGCACT 24348 28 100.0 33 ............................ TATATACTGACTGATTGCCCACTGGTACATTTG 24409 28 100.0 33 ............................ TATCAGTTGGTTTCAAGACAAATCCAATACTTG 24470 28 100.0 33 ............................ CAAGAAGATTACCGGTAATGACTACGTCGCCAG 24531 28 100.0 33 ............................ CTAAATCCATTCAGCAAAAACACGTCACCAGCG 24592 28 100.0 33 ............................ CGCCAACTCACGGCCACTAGATCGTTGGACGGT 24653 28 100.0 33 ............................ CGGTGTCGCAATGCCTAGCTGGGTTCAGGGCAA 24714 28 100.0 33 ............................ TAATGTGCCAGTGGGAGCAATGGTGTTGTCGAT 24775 28 100.0 33 ............................ CAGTTCCTACCTGACTGTCCCACCAAGGTGCCG 24836 28 100.0 33 ............................ CCATGCACGGGCAACGGCTACTTGGTTGTCAGC 24897 28 100.0 33 ............................ CGAACGTAACAACGTGGCCACCATGTTTTCGCG 24958 28 100.0 33 ............................ TCGAAAGAGGTAGAAAACATGAAAACAGCAAGC 25019 28 100.0 33 ............................ TCCTAAGCTGGCTTTGTTGTTAGGCATTAAAAA 25080 28 100.0 33 ............................ CAGGAGGAACCATCATGGCAGAAGAAACACAAA 25141 28 100.0 33 ............................ TACATCAACAAAGAGTATGACGTCAGCGGCACC 25202 28 100.0 33 ............................ TGACATCATCACACACAAGGAGCCATACCAAGC 25263 28 100.0 33 ............................ CAGATAACGTTACATATCACTGGAATAACACAA 25324 28 100.0 33 ............................ TTATTGTCAAAACCACCGTAGTTTTGGCCTGTT 25385 28 100.0 33 ............................ TGAAATATCGTAAGAAGCCGGTTGAAATTGAAG 25446 28 100.0 33 ............................ CGTGCGGGTCTCAGGTAGATGTCGAATCAATCA 25507 28 100.0 33 ............................ CCTTATCGCAAGTAATAGGTACCATATTAAGTT 25568 28 100.0 33 ............................ CTGCTATCCGATCGTGGTCGACCCACGTACAAA 25629 28 100.0 33 ............................ CTCGCAAGCGACAACCGGCAAGAATCTTACATC 25690 28 100.0 33 ............................ CGCAAAATAGGCCGCAAATATTTAGAATAAAGG 25751 28 100.0 33 ............................ TTGTCGCCATTCTTTGACGGAGTTTGACCCCGA 25812 28 96.4 33 .......G.................... TGTTACGTTCGATCCTGATGGTAACGTTGGTGA 25873 28 100.0 33 ............................ TGCGAAAGCCAAAGCGAACAACCGCAAAAAAGG 25934 28 100.0 33 ............................ CATGGCTAGCGATGGTATTATTTCTGGGGCTGA 25995 28 100.0 33 ............................ TAAAGAATAAAGGAAAAAATATTTTGTGTTCTA 26056 28 100.0 33 ............................ TTGCAAGTGAAACATAATACTGACAGCATAGGA 26117 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 84 28 100.0 33 GTTTTCCCCGCACATGCGGGGGTGATCC # Left flank : GAACGAGATGCAATTATTGCCATTGGGGCGGTAAAAGGACCGTCAGTTAACGAAACCGAAAAATTCACTACCTTGGTGAATCCACGAAGGCCGCTTCCATCAACGGTTGCCAAGTTGACGGGATTGTCGGCGGAGGAGTTGGTTGCCAATGGGATCAGTCTGAGCGAGGCAGTGCAGGCCTTACGGGATTTTACCGGCTCGCTCCCTTTAGTCGGATATAATCTGCGTTTCGACATGGGATTTCTTTCGGCAGCGGGTCGTGAAACTGGGTTAACGTCTTTTGGGAATCATACTTTTGATTTACTACCGCTTGTTAAGAAATCCAGTCGCTTTCTGGATAATTACAAGCTTAGTACAGTGCTGGCACATTATCAGATCGATAACGAGCAACCGCATCACGCGTTGTCTGATGCGACGGCAACAATGGCACTGGCGGACAAACTCATAAAAAAAGGAATCTTAACGATTGGCAAACGTTGATGGGATAGGGATTTTTTAGT # Right flank : CCAGTAGCCTCTTGGCTAAAATAGGCTTTTATTTGTTTTCCCGGTTCTGGTGCAAATTTTCCTCGCTGACTTGATTTTAGTATACTGGGTGCCAAGAAACGAGGGATTGCGCGCATGAATCACTTTAAGGGACGCCACTTTCAAAAGGACATCATCTTAGTAGCCGTTGGCTACTATTTCAGATTCAGTCTCAGCTATCGTGACATCGTTGAATTGCTTCGGGATCGGGGTATCACTGTTCATCACACCACGGTCATGCGTTGGGTTCATCACTATGGCCCCATCTTTAAGGCTCTATGGCGTCGGCATCAAACAGCTCACGCTAAAAGTTGGCGAATCGATGAGACCTATATTCGAGTTAAAGGCCGTTGGGCCTATTTGTATCGCGCTATTGACAGTAACGGTTTGACCATGGATTTTGAGCTACGAAAACACCGCGATTATACCGCATCCTATCACTTTTTGAAGCGTCTCTTGACGACCAATGGTCGGCCTGATCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCACGTGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //