Array 1 190957-191411 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWDP01000003.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CFSAN044978 CFSAN044978_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 190957 29 100.0 32 ............................. GAGAGCAGTAGTATGAAAAAATTGGTAATATC 191018 29 100.0 32 ............................. AGATCCGTTAACGGGGATCAGGCGGCCTGTTT 191079 29 100.0 32 ............................. TGGTCGCGGGCTGGAACAGTGTCTGCGCCGCT 191140 29 100.0 32 ............................. CCGTCCACGGTACAACAATCAACGCCGGGAAT 191201 29 100.0 32 ............................. GGCGTCGAACCAACAGTGCCCGGGCAGGATAC 191262 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 191323 29 96.6 32 ............T................ TACCAACAATTCAGCGTTACGCCAACGGTAAC 191384 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATTATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTATAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 207557-208726 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWDP01000003.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CFSAN044978 CFSAN044978_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 207557 29 100.0 32 ............................. GATGTGTCAGGAACGATGCAAATTGCGGACAG 207618 29 100.0 32 ............................. AGCTATATGTCTGACCGTGACGGGTCGGTTCG 207679 29 100.0 32 ............................. CGTCGCTTGCGTCCGGTCAGCGTGCGGGCGGT 207740 29 100.0 32 ............................. ATCGCGCCCTCATCTCCCCAGATTTTTGATAC 207801 29 100.0 32 ............................. TATCACTACCGGATCGGATCGGCTGAATTGAA 207862 29 100.0 32 ............................. AATATATAGTTATATATATGTTAAATAACCTA 207923 29 100.0 32 ............................. AACAGTGCAACCAGAAAGTATTAAAAAACCAA 207984 29 100.0 32 ............................. GTTTCTCCCTTGAGTAGTTCCTTTCGATAATT 208045 29 96.6 32 ................A............ CAAAACTGGATTAATGAGGACGGGTACGAAAT 208106 29 100.0 32 ............................. TTTACCCCCTGTTTACTGCAATAGCGCGGATA 208167 29 100.0 32 ............................. GTCGCGGGTCGTGTGTCTGTTTTATTTGACGT 208228 29 100.0 32 ............................. GAAAACTCTAAATCCAGCACGATTCGTTGTTT 208289 29 100.0 32 ............................. CTATTAATGCAGATTCTAAAAGAATTGCAGAA 208350 29 86.2 4 ...............C.....GA....G. CTTG AACTCCTT [208367] Deletion [208383] 208391 29 100.0 32 ............................. GCCAGCGCTAGCGCGCTCGCGAAATGGGAGCC 208452 29 100.0 32 ............................. GCCATACCCACAACCTCCAGACGCCCAAGCCC 208513 29 100.0 32 ............................. CAGGAGGAATCAACTCTCGACCCTGCTGAACC 208574 29 100.0 32 ............................. TTTACGGGCGCACAGCGAAAACTACCGAGGAG 208635 29 100.0 33 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAAA 208697 29 86.2 0 TAA.........T................ | A [208721] ========== ====== ====== ====== ============================= ================================= ================== 20 29 98.5 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGGGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAGATGATTTGGCAACAAATCACGCAGCTTGGCGGTTGCGGGAATGCCGTCATGGCCTGGGCGACCAACACGGAATCAGGATTTGAGTTCCAGACATGGGGTGAAAACCGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTGGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTTGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //