Array 1 171208-173311 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZNT01000005.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712417, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 171208 29 100.0 32 ............................. GTCACCTAGTGCCTCCGATAAAACCCACATAT 171269 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 171330 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 171391 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 171452 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 171513 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 171574 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 171635 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 171696 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 171757 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 171818 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 171879 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 171940 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 172001 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 172062 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 172123 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 172184 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 172245 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 172306 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 172367 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 172428 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 172489 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 172551 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 172612 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 172673 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 172734 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 172795 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 172857 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 172918 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 172979 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 173040 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 173101 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 173162 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 173223 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 173284 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 189819-192654 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZNT01000005.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712417, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 189819 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 189880 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 189941 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 190002 29 100.0 32 ............................. CCCGCATTTCTCGGTGATCGACTTTGTAACCT 190063 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 190124 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 190185 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 190246 29 100.0 32 ............................. GTAGGCGTGGAGCCTTGTCACTGGCCGTGAAC 190307 29 100.0 32 ............................. GTGGCAACAACGTAGCTAAAGAGATCGGAGTC 190368 29 100.0 32 ............................. GAGGGCGCGGAAATCGGCAATAAGGTCCGGGC 190429 29 100.0 32 ............................. TGGGCCATTGGCGTCTCATCAGTATCAACACG 190490 29 100.0 32 ............................. GCAACCATCGAACTACCCGCTTCAAAATCACC 190551 29 100.0 32 ............................. GGAGTTAATGACAAATTTGAGGAAAAATGTTG 190612 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 190673 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 190734 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 190795 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 190856 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 190917 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 190978 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 191039 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 191100 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 191161 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 191222 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 191283 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 191344 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 191405 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 191466 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 191527 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 191588 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 191649 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 191710 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 191771 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 191832 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 191893 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 191954 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 192015 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 192076 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 192137 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 192198 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 192259 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATCCGCACTGCCT 192320 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 192381 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 192442 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 192503 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 192564 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 192625 29 93.1 0 A...........T................ | A [192651] ========== ====== ====== ====== ============================= ================================ ================== 47 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //