Array 1 103006-100779 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPXX01000005.1 Brevibacterium ravenspurgense 5401308 = CCUG 53855 Bmass_contig000005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 103005 29 100.0 32 ............................. TCCGGTCTCGTCACCACCCTTGCCGTCGTCCT 102944 29 100.0 32 ............................. GATTCGATAGCGTCAATGGCTGTCTTGTCTGG 102883 29 100.0 32 ............................. GAGCGCGCAGCGCCCGCACTCTCATTGACTCA 102822 29 100.0 32 ............................. AAGCTCGACGGTCTGACCGCGACAGCGACCTT 102761 29 100.0 33 ............................. TGGACACGCGACACCATCGCCATCATCAAACAC 102699 29 100.0 32 ............................. TAGACATGCTGCTGTTGCGACTGTCACCAGCT 102638 29 100.0 32 ............................. GCCTGATCAGCAACTGTGACGGTTCACGAGAA 102577 29 96.6 32 ............................G TAGATGGTGTCTCCGGTGTCCGTCTTCGGGAC 102516 29 100.0 32 ............................. CAGTCCCAGGTGGCACTGAGGGTGCGGGAGTT 102455 29 100.0 32 ............................. TTCTCGCCATCATCGAGGTGGGAGACGACATG 102394 29 100.0 32 ............................. GACCCAGACTTCTTCGCTACCGAACCGGCAAA 102333 29 100.0 32 ............................. CAGCAGCTCATCAGTTTCTTCGTCCAGGAACA 102272 29 100.0 32 ............................. AAACCCCAAATGGTGACCAATCCGACCAGAAG 102211 29 100.0 32 ............................. TACACACTCGAATTTCCTGTCACCGATGGGGA 102150 29 100.0 32 ............................. AACGGCGGTATTGCCATGATGGACAGCCTTTC 102089 29 100.0 32 ............................. CGACCAGGCTGGTGGTGGCGACCTTGACCGGG 102028 29 100.0 32 ............................. AACGGCGGTATTGCCATGATGGACAGCCTTTC 101967 29 100.0 32 ............................. TGCTCACCAAACGACAGAAGTACAACCAGAAA 101906 29 100.0 32 ............................. CATGACGCAATGCGATTGCTGCTGGACCGTGA 101845 29 100.0 33 ............................. CGTATCGGGCAGATCGTAACCGAGGGCTTCCAC 101783 29 100.0 32 ............................. GACTTTCTGCCGCTGGATTCTCACCGGGCCGC 101722 29 100.0 32 ............................. TCAACCACGCCCCCGGAGGTGTGGCATGAGCG 101661 29 100.0 32 ............................. AAAGGATGCCTAAGTCGCTCGCAGACGGCCGC 101600 29 100.0 32 ............................. GCTTCGACCGGCGCGGCCACGTCGCGTTTACT 101539 29 100.0 32 ............................. CGATCAGTCGTCTGTGCGGCTGGTGTATGTGC 101478 29 100.0 32 ............................. GCCAACCGCTCCACCGCCTGGTACCTGCTGCC 101417 29 100.0 32 ............................. ATACAGCGGGGCCGCCCGGTCTAGTGGTGCTT 101356 29 96.6 32 .................A........... GCGGTGCCCTTCACAGCGTTGAGAGCGTTCGT 101295 29 100.0 32 ............................. GGGCTACCACAGCCAGTTCCCGGCCGGCCCTC 101234 29 100.0 32 ............................. TGCTGGACATGTCTAGCCGGAAGATTGCTGAG 101173 29 100.0 32 ............................. GCTTCACGCCGGAACGCATCATCACCCACAAG 101112 29 100.0 32 ............................. CACACAGTGTCGTCACCAAAGCTTCCGTCTTC 101051 29 100.0 32 ............................. TGAGACCGGGCGGGAACTGTGGGGCAAGTTCG 100990 29 96.6 32 .............G............... GCTGAGGGCGGCGTGAAGCATCCAAGCCGGGC 100929 29 96.6 32 ............................A TCATCCAAATTTGGGCGGCGCCGCCTAGCGTA 100868 29 100.0 32 ............................. CGGCAGATCGTGGCTCCGGTGGCGAAATTCGC 100807 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 37 29 99.6 32 GTGTTCCCCACGCAGGTGGGGATGAGCCC # Left flank : ACCTCGATGAGCTGTCAGTGTGGGCAGGCCGGGGCGAGCGACGGCTTACAAGCGGGTTTAATCGTGCGGATCACGGATCATGGTCATCGTAGTCTTGTCGAGCTGCCCCGCTGGCCTACGGGGAGACGTCACCAAGTGGCTTGTTGAAATCTCTGCGGGCGTGTTCGTTGGAAAGCTCAGTGCCCGTCTCAGGGAGTTGCTTTGGGAACGCATTGATGCAGCATCATCTACAGGTCAGGCCCTTATGATCTGGTCAACCAACAACGAACAAGCCTTTGACTACCGGGTCAAGGAGCACAGGTGGGAACCCGTTGACCTCGACGGCATCACATTGATGAGACGACCAGCAGCACAGTCTGGATACGGAAATACAACCCTAAAAGCAGGCTGGAGCAAAGCAAGAGCTATGAGGAATGCACATAAATTCGGAAACAAGCGGAAAAGCCCTTAAAGTGATCTAAAACTAGCTTGCAAGCCAGTGTTTGCACTGGTCAGCAAGA # Right flank : TGTCCAACCGGTATACCGCACGGGCGGACGGTGGGCGAGACAGCTCTGGGTCCCCTATGGATGGGGAAGGTTATCGGGTGGCTTGATCTGGAGAGTTTTGAACGACAGATAGAATTGGCCTATGCGCCTTCCCGCCACCACGCTGAGAATCGCAGGGGCTGTTTGCTCAGTCGCGCTGCTGGTCGGTTGTACTCCAGAGCCGAACGGGCCGCCTATCGGAGGTCCCGACTCCACCGAGGAGCGGACATACTCCCGCCCCACACCATCGGTGCCACCCCAGAGGACACCGCAAGAGGGCTGCCCATATTCTGCAGGTGATCGCGACAAATCCTTCCCGATGCAGACATCACTGGGACCTGTCGCACACCAGGTGATCCCGGTCTTCGCGGAGGAGCCCGACTGGGAAAACATCGGATATGGCTTGAATGAGAGCGCACATTCCGGAGATGAGGGCATGGACCCGCACAAGCTGCTTCTCATCGTTGTGCGCGACCCTCAGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCAGGTGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCAGGTGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.20,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //