Array 1 911735-919030 **** Predicted by CRISPRDetect 2.4 *** >NC_018025.1 Desulfomonile tiedjei DSM 6799, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 911735 32 100.0 34 ................................ ATTTGATTTGAGCGCATATTCTGAGGAGTTCAGA 911801 32 100.0 34 ................................ TCATTATCAACCGATACAAGTTCCTTAAGTTCAC 911867 32 100.0 33 ................................ CATAATCCAGACCGATTGCTTGGCATGCGCGCC 911932 32 100.0 33 ................................ TTGTAAAGATGTTGATTATTTTTGGGAGGTCGA 911997 32 100.0 35 ................................ AGTCAGTATACGAGAGCATGTGACGGTGGGTGACG 912064 32 100.0 35 ................................ CCAATGTCAAGCGTAACAAATGATAAGGGTAAGAC 912131 32 100.0 34 ................................ TCATTATCAACCGATACAAGTTCCTTAAGTTCAC 912197 32 100.0 35 ................................ ATTCATCGGCAGCAAAGCGGCTCGTGCTGGCAAAG 912264 32 100.0 34 ................................ ATGTAGTCAAACTCCTCGTATTATTTGTCTCCTA 912330 32 100.0 34 ................................ AAGCTGACGAAGCGTTGATACTCGCAACAGAGCC 912396 32 100.0 35 ................................ CAAGATCAACGTGGGTCGTACTTACCTGATGGTAA 912463 32 100.0 33 ................................ TTTGCACTGTATTATGAGGGTAAAAGTCCTGGA 912528 32 100.0 33 ................................ TGATCGTGTTGAAGCGCGTCTCCGCTACGACAT 912593 32 100.0 34 ................................ CCCTCCAGAAAGTTCGGTATTATCAACCGTATTG 912659 32 100.0 34 ................................ CAGACAAGCAAGACGGCAAATACTTAGACTTGAC 912725 32 100.0 35 ................................ ATATTCGGCACTTTACCATCCGGCATACTTCCCCA 912792 32 100.0 33 ................................ GGGTGTTGGGAGTAATGGTCTCCTACCGACCGG 912857 32 100.0 34 ................................ AACCCATTGAATGTTAGAATGTAGTGCGGAAAGT 912923 32 100.0 33 ................................ TCGATTAGCGTCCGCGTTCAGCTTATTGCAGAC 912988 32 100.0 35 ................................ CATTCCGATGATAACCGTGACTGCCGATTACCAGA 913055 32 100.0 34 ................................ TTTCATTCCGATTTCAGGACGTAATGCTCGCCTC 913121 32 100.0 34 ................................ ATCAGTGAATTTGGAAAACGCTTTATAACCGCCT 913187 32 100.0 35 ................................ TGTCTGCGTCTTTTCTTCGCTAACACAACGGAACA 913254 32 100.0 34 ................................ ATATAACCGGCTGTTCGAATAGGAATGTTATCTT 913320 32 100.0 32 ................................ AAGTTATCCACAGGTTATTAACAGCTTTATCA 913384 32 100.0 35 ................................ ATCCCCAAGACTTAAGAGTGTTCAAAACTCCGGAA 913451 32 100.0 34 ................................ AAGCCATGAAAATCAAATACGCCAATGAATTACT 913517 32 100.0 34 ................................ AAGGGACTGACGGCCAAGCGTTAATAGTCGATTC 913583 32 100.0 35 ................................ TCCAATGAACACCGTCAAGGATTGGAAACTCAAAC 913650 32 100.0 34 ................................ ACGAGTGCAAGTTCCGATCCTGCTGTATTGTCTA 913716 32 100.0 34 ................................ TCAATCCTGAGCGTAGTATCCCTTGCGATTGGTG 913782 32 100.0 33 ................................ ACTACCGAGCATTGTAAAAAAATCTGATTGCAA 913847 32 100.0 32 ................................ TATGCTCCGGAGGGGGTTAGATGAAGTGTAAA 913911 32 100.0 35 ................................ TGCACGGGATGGTTTATCGAGTTGAGGATGTAAAG 913978 32 100.0 34 ................................ AACACAATCTTGACGAAAGGGCAGACGAGTTATG 914044 32 100.0 34 ................................ TGGCCGACTATCTCTTCCATGTCCAGGTTTTCGC 914110 32 100.0 33 ................................ AATATTCGATACAAAATCACAAGTGATGGCAAA 914175 32 100.0 33 ................................ ATAAACGTCAATGGCGAACAGGCTAAAATTGGC 914240 32 100.0 34 ................................ TTCTAAAGGATGGGCAAAGATTCTTAATGGTCCC 914306 32 100.0 33 ................................ ATTCTACTTGAGAAAGGTGGATCTCCCACTACA 914371 32 100.0 34 ................................ TGATAGAAGATTTGACAAATGGCAGGGTTACAGT 914437 32 100.0 34 ................................ AGGAAGGATGTTTCGTGAAACTGTTATGATGCAT 914503 32 100.0 38 ................................ GGTTTTTTGGCATCGGGGCATGGGATCATCCGCTGGGT 914573 32 100.0 34 ................................ ATGATTATGTTTTACCAAGAAGACAGGATATATG 914639 32 100.0 34 ................................ TCCCAACATGGGGCCGATCTCAGGAAGGATCTCG 914705 32 100.0 34 ................................ TTGGTAATCTCTTGTCCAAGGTGAAGGCTTCAGC 914771 32 100.0 35 ................................ GCTTCTTACAGCGCTTAACCGGAAGGAAAGGAGGA 914838 32 100.0 35 ................................ GAGGATTGGGATGTTTACGTTCCGACCGTGGCATG 914905 32 100.0 33 ................................ CAGTGAAGTGATTGAACAGAATGCCGTTGCACG 914970 32 100.0 33 ................................ AGGGACACCTATTCGTGGAACGTGCTGGAGATG 915035 32 100.0 33 ................................ CCTGTTCACGGGGGAATCACGTATGCCGACAAT 915100 32 100.0 33 ................................ AGTATAGATCAAGCAGAAAAGATTCGCAAGATT 915165 32 100.0 33 ................................ AAGACCGCAGCCTGTCCATAGTTGTTGATCTGC 915230 32 100.0 34 ................................ AAAAGTGTACGCAGCGCTTGACGATCTGACCAAA 915296 32 100.0 33 ................................ AACGAAGATAATCCGTTTGAATGCTTCGAGACG 915361 32 100.0 34 ................................ TTGTTTGTCCTAATGGGTTAATATAACATCCCAT 915427 32 100.0 39 ................................ TCGTTAATCGATGCCTTACGCTCGAAACCCACGGCTTCC 915498 32 100.0 39 ................................ TCGTTAATCGATGCCTTACGCTCGAAACCCACGGCTTCC 915569 32 100.0 34 ................................ CTCCTCGGGAACTATACCACTGATGGAGACAACG 915635 32 100.0 33 ................................ AGTTTCCCTCCGACTTTTTTCCTGATCTTCCTT 915700 32 100.0 32 ................................ ACTTGTTCGGGCATGACCGCTCCGACTACGGC 915764 32 100.0 35 ................................ GATTTTATCATTGAAAACTATGTCCAACCCAAGGC 915831 32 100.0 34 ................................ GATCATGTTGTGGATTCCCGCCAAGGGCACGATA 915897 32 100.0 33 ................................ ATCCCTCGTAGTCAAGTAACAGCCCGTGTCAGG 915962 32 100.0 34 ................................ TCTCTCCATGTTGTGCACATAACTAATCAGACAC 916028 32 100.0 33 ................................ AGGATGCCCTGGCGTTCGTCACCGAGCCAGGGC 916093 32 100.0 33 ................................ CAGGAAGTATTTACCAGAGGACATGACTAGATA 916158 32 100.0 35 ................................ CAATATATACCCTATAATAGAGTACTGACCGGCTT 916225 32 100.0 35 ................................ AAGACGAATTTCTCCTATTCCAAGAAAACTTGATA 916292 32 100.0 33 ................................ CCCTACAGCAGCAACGATGTCGGCGGCAAACTC 916357 32 100.0 35 ................................ CAGAGTGAACCGCACGTGGTCTGCATTACTACCGC 916424 32 100.0 34 ................................ CCTACCTGAGTAAGCGCAAGGAGCAACGTAGGCC 916490 32 100.0 34 ................................ TATTCAAGGGTAGCCCGCAGCGTCCCCATGAAGT 916556 32 100.0 34 ................................ GAGCCGGAGGACCGGCCATGAAAGACGGTAGTTT 916622 32 100.0 31 ................................ TTGACTTGTCTTTTGTGGAGAGGTTTATCAC 916685 32 100.0 35 ................................ AAAATCTCACGGCGCGCCGCTTCGCAGCCACGGGG 916752 32 100.0 33 ................................ CAGAAACACGCTATACAATCCCTGTCGGCCAGT 916817 32 100.0 36 ................................ CATTCGTGCTCCTGGTTTTCGGCTGCCGGGCTGCAT 916885 32 100.0 35 ................................ CTCACGGTTATCACCGACACCGTTATCTCTAACGC 916952 32 100.0 33 ................................ CCTCTGGCCTACGGCGGAAACCCGCCTAAAACG 917017 32 100.0 34 ................................ GTAAAGGTGGATTTCATGATCTCAAAGATACAGA 917083 32 100.0 35 ................................ AATGATCGGTGGGAGCAGGAAGGCGTGTTTCTCGA 917150 32 100.0 33 ................................ CTTTCAGGTCTTACACCTACCGGTCCGAATCAG 917215 32 100.0 34 ................................ ACCGCACCATAACAGGAACGGAGGCATGTAGAAC 917281 32 100.0 36 ................................ TCGTTTAGGAATGCAAACGATGGCACGGGGGTTGAC 917349 32 100.0 34 ................................ AGGTGCGTCCGTAATGGGCGCCGAGTTGAGCGGT 917415 32 100.0 36 ................................ TCTACGACCACTTACCGCAAGATCAAAAGAAGCCGC 917483 32 100.0 34 ................................ ATCTTTTCCAAAAGCAACTTGATCTGATGCTCGG 917549 32 100.0 35 ................................ ACCGGAGTATTTCCTGAATCCTCGAAATGCCCTGT 917616 32 100.0 34 ................................ AGGACAGGCTCAACCGCAAGGGATCACCGGAAAA 917682 32 100.0 34 ................................ GAGCAATGCTGTAAATGCTGGGAGAACTATCAAA 917748 32 100.0 33 ................................ TCAATTGCTTTTTGAAGCGGGTAAAATTTAACT 917813 32 100.0 33 ................................ GCTTCTAATTTCAGCTTCCAAAGGGAATCCACA 917878 32 100.0 35 ................................ TATAGGTCGGAGAAGCATTCCGGCAGTCCATTCGC 917945 32 100.0 35 ................................ TCTGTGGTCAAAGATCACCTTCAGGAAGGGTCCAC 918012 32 100.0 34 ................................ CGAGACCTACGGCTTCCCTGCCGATTGGGAACAA 918078 32 100.0 33 ................................ CTCGAACTCGACGTGCTCAACTCCAAAGAGCTT 918143 32 100.0 33 ................................ AGGTTTTCCATGCTACCAGGATTGACTACCAGC 918208 32 100.0 34 ................................ TTTACTATCTCGGAAACACGCATGCCGGTTCCGA 918274 32 100.0 34 ................................ AGCTTTTGAGGCTTCCACGACAAAGAGAACCATC 918340 32 100.0 34 ................................ ACCCCAAAGCTGGTCAGAGAAGTTCTTGAACCGT 918406 32 100.0 33 ................................ ATTGGTGGGAACCTTTATTACATCCAGGATGTG 918471 32 100.0 33 ................................ AAGTCAAAAGATGCACTGTCGTTTGCGGAGAAA 918536 32 100.0 32 ................................ CGCATTCATGAGCGCAATATCCATAGTGTTCT 918600 32 100.0 34 ................................ TCGTTGAGCTCGAGCGGTCCTAGACATTCCGGAC 918666 32 100.0 34 ................................ TCCCAGTAAGTGTAGAGTCCCGCCAACGTAGATC 918732 32 100.0 35 ................................ TATGCTAGAATTCCTCTTTGCAGCGTTGCGCTGAG 918799 32 100.0 35 ................................ ACGGTTCGAGCCCCCTGGCCGTTCACGCCATCAGC 918866 32 100.0 34 ................................ TCCGTCCCCAACCTGAATCTTGACCGCTTTCCCA 918932 32 100.0 35 ................................ AATCGATCTGGCAGTGCGGAGTAAACGGCTCATCA 918999 32 96.9 0 ..............................G. | ========== ====== ====== ====== ================================ ======================================= ================== 111 32 100.0 34 GTCGCCCCTCACGCAGGGGCGTGGATTGAAAC # Left flank : TTTTTGGAGGTAAGTATAGCCATGCTGGTGCTCGTGACCTATGACGTGAACGTGCAGACTCCGGAAGGTAGGAAACGACTTCGTCTGGTAGCAAAGACCTGCAAGAACATGTGTCAGCGAGTTCAGAAATCGGTGTTCGAATGTCTGGTCGATCCGGCGGAGTGGGTCATTCTGAAAAACAAGTTGGAGGGGACAATCGACCCGGAGATTGACAGTCTTCGATTCTATTATCTTGGAAAGAACTGGAAGCGACGAGTGGATCATATGGGTGCCAAAGAGCCGTACGATCCAGAGGGACCACTTTTGGTATAGAGGCGATAATTGCGAACCTGAAGCTCACATGAAAAGGCCCCAGGTTTCGCAGAAGATGCAACATTCTGTAATTATGAGAGAATATTATTGTCTTTCTGTGGAGGGATGGTCGGCATGCGAATGCCAAGATCAGGATCGCAGAACAGATGATTGTAAACACTCATTGATGCGGGTCTCAGAGCTCCGCA # Right flank : CAACTGGAATGTGAGGGTTTCAGAAACCGGGCAGGTAGTCGTCCCTCACGCAGAGGTACTTCGTTTCACACGGACGCAATCATCTTTCGGAAGAAGAAACCAAGAATGATTTTCCCATTATTCAGATAGCAAGCGGAGGCTGAGAGAGTTGCATCCGTCTATCTGCTGCGCAAAATAACAAACGGTTAGAGTCGACTCCTTGATGTTTTTGCAGCACCGGTTCCCCAGAGATGAGACATGTTTCATCTCTGTCTCACGGCAGAGCAGGCATGTCCCATAATAGGACGGGATAGTGAGGACGCAATCAAAGACAAAGTTAATGCGCTCCCCAACAGTGCGTATTCACGGAGTTAATTATGTTTACTCAAGTTCCGCTCAGGTGGCATACCAAATGCATAATTCGGGTTGGAACCAAAGGCACTATCCTTGTAACGACATACCTCACCATCCAAGGAGTCGCAAATGCACTACCCTCTTTATAGACCGAGAAGATTGAGGAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCTCACGCAGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCCCTCGCGCAGGGGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.90,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.15,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 5267897-5269938 **** Predicted by CRISPRDetect 2.4 *** >NC_018025.1 Desulfomonile tiedjei DSM 6799, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5267897 29 100.0 32 ............................. GAAGGAAAAGCGCTCATCCTTGAGCTGCGCGA 5267958 29 96.6 32 ............................C GTTTTGCAAGTCAATAAAACCGCCCCGTTTCT 5268019 29 96.6 32 ............................A GTTCACTAGCTATCACAGAATTGCGGGATACC 5268080 29 96.6 32 ............................T GTTGATGTGGTGCGGGATTCCGGAGGTACGCG 5268141 29 100.0 32 ............................. AGATTTTTTCCGTTCACGATATTTCCTCCACA 5268202 29 100.0 32 ............................. GAATAGCGGTGTGCGATCACCGTGGCGGAATT 5268263 29 100.0 32 ............................. GTCTATTTTGAACTATTTTTTGGACTTCAGAC 5268324 29 100.0 32 ............................. CCCGCATCCAACACGCTGAGGAACCGCTTGAG 5268385 29 100.0 32 ............................. GTAATGGAGATTCTCTTCCAGATCCGAGGCAA 5268446 29 100.0 32 ............................. ATGTTTCGAGCCTGGTCATACCCCGGGGGAGG 5268507 29 100.0 32 ............................. GTCCCGGTCGATGAATCCATCGTCCGAGGATC 5268568 29 100.0 32 ............................. TTAGGTCTGGAAAAATCACATCGCAACTGGCG 5268629 29 100.0 32 ............................. GAGGACAACATGATCGCACAGGAAAACAGCAG 5268690 29 100.0 32 ............................. TTCCAGCGTTCGCCGGAATCCGCATTTCCGTG 5268751 29 100.0 32 ............................. TTTGGGTGGTCCCGAATCGTGGGTCATTGGCC 5268812 29 100.0 32 ............................. AATGCCTGGATCTGCCAGACAAGCTCTACACA 5268873 29 100.0 32 ............................. GTCTTTGAATCCGGACGGCACCCCGGTGATAT 5268934 29 100.0 32 ............................. AAAAACGTGAGCGCAGCGGTGCACAGAAACCC 5268995 29 100.0 32 ............................. ATCGTTATATGACAGGTCCCGAGCTGACCGGA 5269056 29 100.0 32 ............................. CGAGGCGGAGCTTCGCAGACCGGCTCATGAAA 5269117 29 100.0 32 ............................. ATCACTCGACCGATGATCTTCAATTCTTTGAC 5269178 29 100.0 32 ............................. AAGGCCAGGAAAGCCGATCCGGATGCGACGAT 5269239 29 100.0 32 ............................. GAGGGTTAAGAGGTCCGGATTCTATAATGGAG 5269300 29 100.0 32 ............................. AGTATTTAAAAAATGATTACTTAAAAAGAGAA 5269361 29 100.0 32 ............................. AAACTGGTATTTCACTAGTAACTGCCCACACC 5269422 29 100.0 32 ............................. AATTTCTAATGCAAAGAGATGCTTTTACAGTA 5269483 29 100.0 32 ............................. AAAGGGCACTGTCCAAACATTAGACGACTTCC 5269544 29 100.0 32 ............................. TTGTAGCATCCGCGCAGCAGCGCCCGGAATTT 5269605 29 100.0 32 ............................. GCAAGATCCGGCAGGAATACGAGGCCGCTATT 5269666 29 100.0 32 ............................. CTCATATTCGCCTGCAGGAAATTCAAGCCATT 5269727 29 100.0 32 ............................. GTTTCTGACAGGCCCGTGACCGGGCCCGGCAA 5269788 29 100.0 32 ............................. ATCCTCGACACGAAAAACAACGCCGAGGTCGA 5269849 29 100.0 32 ............................. TTATGAGAATGAGAAGGAAAGTGTTGTTCGAT 5269910 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 34 29 99.7 32 CTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : TGAGGAGGTCCTTTCCGCTGGCGAAATCGCGGTGCCCTTAGAGCCAGATTACGCGGTCCGGCCAGCTATTCCCAATCCGAGAGGTCTTGGTGATGATGGTCATCGTAACTGAGAATGTGCCACCGCGCCTGCGTGGGCGGCTCGCCATCTGGCTGCTGGAGATCCGAGCCGGCGTGTACGTGGGCGATTATTCGGTGAGAGTGAGAGACTATATCTGGAGTCAGGTCGAGCAAGGGGTGGAGGAGGGCAATGTGGTGATGGCCTGGACAGCGCCGAACGAAGCTGGATTTGACTTTGTGACGTTGGGAAAGAACCGGCGGATTCCGCTTGACATGGATGGAGTGAAGCTCATATCGTTCTTGCCGCAAACCGAGGATCTCGCTGACGGCGAGGAAGTGGAAGATCTTTGAGTCGCTCCAGTAGAGGCGTTTCTCCTGCGATAACTTGGTAACCCTGGCGAGGTGAAAAATCCTCAATGGTTCTCGAGGCCTATCAATAGT # Right flank : GCAGCATGCTGCCTCTGTCGGTTTCCGCTTCCTTTCGCCTTGTTGGTTGTGGGGTGCTGGATGGACGAAAACAGTTTGACCTGGCTAGACCGTGCTCCCAAAATCAAGCTTCTGCGACAAACTGACGAAAAAGAATTATTTCCTCTTACTCCGTCAGAGCAGTTCGATTGTTTGCTGAATTACTCGAACATCTGGCGAAAATGGCTCTTTTTAAAGTGAATACGGGGTGTCGAGAGCAAGAGGTTTGTGGGCTGCTCCGGGAATGGGAGATTCCTATTCCTGAAATGAACACGAGCGTTTTATTCTGAGGGAAAATTTCCGTCCTGTGCCAGCCAAGCAAGTAGGCGGAATATCTGGTTAATCAGTGGAGCCGGGGATGGGAGTCGAACCCACGACCTGATGATTACGAATCATCTGCTCTGGCCTCTGAGCTACCCCGGCGACAGAAACCTCAAAATAGATCAACTCCGCTGCGAATGTCAACTGGTGCTTTGTTATGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //