Array 1 10064-13916 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWWZ01000020.1 Bifidobacterium eulemuris strain DSM 100216 Contig_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 10064 33 100.0 34 ................................. CTGGATCGATTGTGCTCGACAAGGGCCTTTCGGG 10131 33 100.0 34 ................................. AGGAAGGCGACTTGTGCATGTTCACGGCCAACGG 10198 33 100.0 34 ................................. CAGCAATGCACGTACATGGGTTGATTGGCGTACA 10265 33 100.0 34 ................................. TTCGCGGCCTGATTGGCGAAGCGTGTGGGCTTGA 10332 33 100.0 35 ................................. GAGTGGGTGCCCAACACCGAAGGAACCGTGAAGCT 10400 33 100.0 35 ................................. GTCTTCGAAGCGGTGTGGCGGGCGGCGTTAGGAGA 10468 33 100.0 34 ................................. TCCAACATCTGGAACACGATGGTCAACGCCGTCG 10535 33 100.0 33 ................................. TTCCTCCGACCTTGGGTCTAAACTTGGTCACGG 10601 33 100.0 35 ................................. ACTTTGGCGAGTTCGTCGATGCTGGATACCTGCTG 10669 33 100.0 34 ................................. GCGTCGAGCATCTCCTGGAGTCCCATGACGGCGA 10736 33 100.0 35 ................................. GTCGAGGGTGAATTCGTGCGAGACGCTGGCGAGGT 10804 33 100.0 33 ................................. TTGCCGATGGGCAAGGGGTTGTGGCCGATGCGG 10870 33 100.0 32 ................................. ATGCACGTCGAGTTTGAGGTCGGAGCGCAGGA 10935 33 100.0 34 ................................. TCCTTGGTCCGCGCGGGGTATTCGCCGACCTTGA 11002 33 100.0 34 ................................. CTTGCCGGCCTCGCCGTACGTGTTGTCGGGGTCG 11069 33 100.0 33 ................................. AAATCCATGCCCCGCTACTAGGTTCGAGGTCGC 11135 33 100.0 34 ................................. GCTGTAGGTGAGGAAGTTGGTGTTTATCCACGTC 11202 33 100.0 34 ................................. ATGCCCACGATGGCCACACGACTGAAGGCCACCG 11269 33 100.0 34 ................................. CTCGACTTCGACCCCATGCCGTTCAGCGCGGACG 11336 33 100.0 34 ................................. TCCGTGGTCAGTTTCCCCTGGCCTGCGGTCTGGG 11403 33 100.0 35 ................................. CAATAACGTTGGCCAATTCGGCCTCCTTTCCGCCC 11471 33 100.0 33 ................................. ACGGTGTCGCTGCCGCCCTTGCTGTACGGCATG 11537 33 100.0 33 ................................. GTGTAGGTCAGGTTGCTGCCCTCGACGGCCGCT 11603 33 100.0 34 ................................. TAAAAAATATAAGAAGAGAACATCATGGAAGAGA 11670 33 100.0 33 ................................. TATCGCGCGACCCAACGAATTTGGCAGAAACCG 11736 33 100.0 32 ................................. GCTTTTGTTCTGCGCGGAGGTCAGACGCTCCT 11801 33 100.0 34 ................................. TCCCAGGGCATCTCCTTGGGCCGGTACACGTAGG 11868 33 100.0 35 ................................. CTCCCTAATACAACGCCCGCGACTGCGGTGCCGGT 11936 33 100.0 33 ................................. CGACCGACGGGGCGGCAGTCGCCGCCGTGTCCG 12002 33 100.0 34 ................................. CTCCCTAATACAACGCCCGCGACTGCGGTGCCGG 12069 33 100.0 34 ................................. AAAGCCGCATGGGACCTCATACGCGACGCCATCA 12136 33 100.0 33 ................................. TGGCAGGCGTGGTGGTATGCGCCAGCGAGGTAG 12202 33 100.0 37 ................................. CTTTCTGGCATGCCGGCGAGCGCCGGCGCTGTTTGAA 12272 33 100.0 34 ................................. AGGACATGCTGCGCGACGGCAGCCTCACCCACCT 12339 33 100.0 34 ................................. GCTGATGTCGCGGTCGAGGCAGCAGGCGGCGCGG 12406 33 100.0 33 ................................. AACTCGGTACAGGGCGACGCGGCGAGCCTCGAA 12472 33 100.0 35 ................................. CACGGAAGCAGCATGCCCCTGTAGTCTCGCCGCCG 12540 33 100.0 34 ................................. ATCTGCTGCAGCTGAGTGTTAGCCGCCTGCTTCG 12607 33 100.0 34 ................................. AGGCAGAACCTCGCCAAGGCCACCAGCGCGAACA 12674 33 100.0 34 ................................. CTGCCGGGTCTGTGGAGATGATGATCTGGCCGGC 12741 33 100.0 33 ................................. AACGCCAAGGACCGAGGAATATCCATCGACCTC 12807 33 100.0 35 ................................. ACGGCCCACGCGCCGTACTGCGACCCATCCCTGAG 12875 33 100.0 34 ................................. CTGTAAGGCCACCATATCGTCAACGCGGTAAGCA 12942 33 100.0 34 ................................. AGCATCGCTTCGGCGGTCTTTCGCCATCGTTTTT 13009 33 100.0 36 ................................. CTCGGAAGTGAACTGTTCGCCGTATTCCGACACCAG 13078 33 100.0 33 ................................. ACATTGCCGGTGGCGACGCATTCGAACACCATG 13144 33 100.0 35 ................................. ACCGATTGGAATCTGGTCTCCACACGGATCGTGGC 13212 33 100.0 36 ................................. AGTGTTTTGCACGACACGTTCGAGGATATGTGTTCG 13281 33 100.0 35 ................................. TGCAAGGGCATGTTCGGTTCGTCGGCCCACCGCCA 13349 33 100.0 35 ................................. CTACCTGCGCGCGGATCTCAGCGCCGGCGACCGGT 13417 33 100.0 34 ................................. TTCACCGTCCTCTCGGCCGAGCCGAACACCAACG 13484 33 100.0 33 ................................. AACGCCATCGTGCCGATCGTCGGCACCGTCATC 13550 33 100.0 34 ................................. GAGCGCGCCCGCGACGACGTGGAGGCGGTCAGGG 13617 33 100.0 34 ................................. GCCGAGGGGTCCGGCAAGTCCTACCCGGCGGGCA 13684 33 100.0 34 ................................. ACGAAGTACTGCTGGCCCTTGCCTGTCACGAGCG 13751 33 100.0 35 ................................. ACATCGGCGCCGTTCGCTATCGCGATCGAGGCGTA 13819 33 100.0 32 ................................. CCATACCAGGAGAAGAAGGAGCCGACATGGAG 13884 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 58 33 100.0 34 GTCACCTGCCTCACGGCAGGTGTGGATCGAAAC # Left flank : AAGACTTCGTGCGGTGGCAAAAATCAGCGCAAAATACGGGCAGCGTGTGCAGAACAGCGTGTTTGAATGTGAAGTTTCGCCGTCGGATTATTTGATGTTGGTACATGATCTTGTGGAGGTGATGGATCAAGAACGAGACAGTCTTCGCATGTATAAACTTGGTGCCAAGCACTCGTCCAAGATTGAACAGTTCGGCAGGCGGCGACATCTTCCCGTTGATGATGTGATGTTGATTTAATGGGTTTCTCATATATGTGGTGCGAAATGGAAGCGCTCAGAAAATCCCTGGTTCCTTCGCACCGCTAAATTTGTGTTCAGGCTGTAGCGAATCTTTTTAGCAGATTCCGTTTGATGCTTGATAACTGAATAGTGGGCATTGATGTGAGACAAGAGATCGATGATGCATGTTTGCTGATCACTCTCTACAATAAACTCGCATAATATCAACGTGCGGATGAGCTCTTCGTCCCATATATCGAGATGGAGAGCCCATCTGTGCA # Right flank : CCAGAATGTGTTTTGTCAAGTTCGTGTCGGCTGGATATTCATGTTGTTTTCCGCAGGTTGTGCAGCGGGTTTTCCGCGGGATGATCGTTCCGTGGGTCCGCCCGCCGCCTTGGTCTGGTTTGTTGGTTATTTGGTCATGAGGGCGTTGCGGCTGCGGTAGCTTTCGCCCTTGAACCGGATGAGCCGTCCGTGGTGGACGGTGCGGTCGACGACCGCGGCGGCCATGTTCGGGTCCCCGAACACCCTGGCCCATCCGCTGAATTCGATGTTGGTGGTGTAGACGACGCTCCTTGTCTCGTAGGAATCGGATATGACCTGGAAGAGGAGGCGGCTGCCCTCCTCGTCGATGGGGATGTAGCCGAGCTCGTCGATGATCAGGAGGCGGGCCTTGGCGATGGCGGCGAGCTCCTTGTCGAGCCGGTTGTCCTGTTTCGCGCGTCTCAGGCGCATGACCAGGCTTGAGGCGGTGAAGAACCTTACCGGTATCCCGGCCCGGCACG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACCTGCCTCACGGCAGGTGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.10,-8.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 743-5738 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWWZ01000024.1 Bifidobacterium eulemuris strain DSM 100216 Contig_24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 743 33 100.0 34 ................................. AAGGACAACGCCGCGCAGGTGCACGCCTGGGCCG 810 33 100.0 34 ................................. TGCGTCCACAGCACGGCCAATCCGGGCGCGACGG 877 33 100.0 33 ................................. AAACTCGGCAGCAAATCCGCCCCGTGGGGCACG 943 33 100.0 34 ................................. GAATTCGCCATGACCGGCAGCCGCGTCAAACGCA 1010 33 100.0 33 ................................. AAAACCGCGTTGGGCAAGGCCTCCGAAGTCCTC 1076 33 100.0 35 ................................. ACGAACACCGACTGGGGTTCGGTCGGCAAGGGCAT 1144 33 100.0 34 ................................. TCTTTCACCAATTAACCAGATTAAGGAGCAGTTA 1211 33 100.0 33 ................................. CAGTAGCTCGACCCGCCACGGATGATGCCGGCC 1277 33 100.0 34 ................................. AATCAGGACGGCGCACGCCTGACCCGCTTGGACG 1344 33 100.0 33 ................................. AGCATCATCACGCAGGGCAACCTGTGCCAGATC 1410 33 100.0 34 ................................. ACGGCCACGGACTCCTTCGCCGAGGGGGCCGGCA 1477 33 100.0 34 ................................. TCGGCCACGATCTGCTCGGTGAGCACGGGCATCA 1544 33 100.0 35 ................................. TCGCGGCCATCATGCAAGTGCCCGCGAACAGCGAC 1612 33 100.0 34 ................................. TCCAACACGGAGAGGGCCGTGGACGAACTGTCTC 1679 33 100.0 35 ................................. CAATCGGCGGCGCTGAAGGGGTCGGCGTCCATGCG 1747 33 100.0 35 ................................. CTGACTGCATGTCAACTCGAATGCGCGCGTCAATG 1815 33 100.0 35 ................................. AATTTCGCACACGTGCAATGTCGCCATATCGGCGG 1883 33 100.0 34 ................................. GCGGTGGGCTTTGATCTCGTCCCACGTCAGTCCG 1950 33 100.0 34 ................................. ACCCTCTCGAGGCAGTATTGCAGGGCAACGGAAT 2017 33 100.0 33 ................................. CAGATGGACACCTGCCCATCCGGCAGGACGAAG 2083 33 100.0 34 ................................. GAGGTCGGCGACACCGTCATGCGCGGCGCGATGG 2150 33 100.0 34 ................................. GCCAAGCCGGAGGACAGAAGGAAGATCCTCGAAT 2217 33 100.0 35 ................................. CAGCAGTGCGCGTACATGGGCTGGTTGGCGTACAG 2285 33 100.0 33 ................................. GTATCGTTTCCGACGCATCATCGTGCTCGTGGC 2351 33 100.0 32 ................................. GAGGACATCTGCTCAAGGGTCCTGCGGCCCGG 2416 33 100.0 34 ................................. ACCGCCAGCCTGCCGCGCGCGGCCATCGCCCAGC 2483 33 100.0 34 ................................. ATGTAGGCGTAGCCGCCGGTCTCGTTCATGATCT 2550 33 100.0 33 ................................. AAACCGTATCGAGCGCCACACCATTGGACGAGG 2616 33 100.0 35 ................................. CGACAGCGTCGGCTACCGGCGCAGAGAAGACATCG 2684 33 100.0 35 ................................. AGTTCGGGTACCATGCGACATAGTTCGTCGAAGGA 2752 33 100.0 35 ................................. TATGCTGAATCCAAAGAAAAGCTCCATCGCGGAAG 2820 33 100.0 34 ................................. CACAAAATGCCGCCCACCGAATCATGCGTCTGGG 2887 33 100.0 35 ................................. CAAGAGGGCCATTGCGGTGCCCCAGTCGCGTTCGT 2955 33 100.0 33 ................................. AACGACGCGCACGACGATATCTAGGAGGCTTGC 3021 33 100.0 33 ................................. TCGCCATGCGCGACGGTGGGCGCGGTGATCCAA 3087 33 100.0 33 ................................. CCCGACCTGCTCGTGCGCATGGCCAACGGGCGC 3153 33 100.0 33 ................................. AGCCAGCAGCGACTTGAGCACGCCGGTCACAGG 3219 33 100.0 35 ................................. CTCGCCGGATTGTTGTTCGCGGTCGTGTTCGGCGA 3287 33 100.0 35 ................................. ATCGGCTACGCGAACGGCCTGTACTGCCGCGAATA 3355 33 100.0 35 ................................. TGCTCTCCCTCGCCCAATTCGCCGGCGAGCTCGCC 3423 33 100.0 36 ................................. TCCCGCATCGGCGACGCCGCCGCCGACGTCGTGACC 3492 33 100.0 35 ................................. CGCTCGAATAGCCGGTGAGCTGCGTCCACGCGATG 3560 33 100.0 34 ................................. CCGCTTATCCCAGGCGTGGCGACCATCAGCCTCA 3627 33 100.0 34 ................................. TGTAAAAACCATTGGCGATGAACACGGGAATCAG 3694 33 100.0 34 ................................. ACGTGAAACATCCGCCGTGGAACCCGACGAACCA 3761 33 100.0 34 ................................. GACGAGCGTTGGGCCAATAAGTTCGCGGCTTCCC 3828 33 100.0 34 ................................. CATGTTGAACATGATCGGCGGCGGTGGGCTGGGG 3895 33 100.0 34 ................................. ACGGTCACGCCGGAGAACGGGCCTATCAGCGACG 3962 33 100.0 32 ................................. GTCCTCAACGTCGGCGATCCGGAAATCATCGA 4027 33 100.0 33 ................................. GCACAGAAAGAGGGCATGACGGCTTGGACGACT 4093 33 100.0 34 ................................. ACCGATCCAGACGGTCATTGCCTCCGTCATCAGA 4160 33 100.0 34 ................................. GTCGAGCGCGTCGACGTAGGCTTTGGCTTGGGTC 4227 33 100.0 34 ................................. CTTTCTTTATGCCGTCCAATAGGCGTTGGCGGCG 4294 33 100.0 35 ................................. CCATGCCGCGGTACTTGTCGCGCATGTCCTTGAGC 4362 33 100.0 33 ................................. TCAGGCGACACCTGGAACGCGTTGGCGACGGCG 4428 33 100.0 34 ................................. GCGGCGTTGATGTCGGCCAGCCATTGCGCGGTGA 4495 33 100.0 34 ................................. CAGCAGTGCACGTACATGGGCTGGTTGGCGTACA 4562 33 100.0 35 ................................. TTGACCTGCGTGGGCGTGATTCGGCGTCCCACGGT 4630 33 100.0 35 ................................. TCGCCGGACCCGTCGCCGTTGAGCAGCTGCGTCGT 4698 33 100.0 35 ................................. AATGGCCTCGTGACCGCGCGGCCCCGCAGGCATGG 4766 33 97.0 34 .............T................... AGCTCGTCCACGGTCATGGAGGAAAGACCATCCT 4833 33 100.0 33 ................................. GTCAAGCAGCAGGCCTCCGCGTCCGCCTGACCT 4899 33 100.0 33 ................................. CCGTACCTGACGCACCAAACGCACCTCACGACA 4965 33 100.0 34 ................................. TCCTGCTCCTGCGTGCTCGCGCCGCCGGCCAACT 5032 33 97.0 36 ................................T CGTTCCGGCCAGCGGCGACAACGTGTTCATTGCCTA 5101 33 97.0 35 ................................T CTCGTGCCGAAGCGAGGCGGGGTGTTCTGCCGCAA 5169 33 97.0 34 ................................T CGGTAGTCGGGCTCCCGCACGCCGATGGTGCAGG 5236 33 97.0 34 ................................T GACGAGGAGTCCGGCTGGCCCGACGGCGACCGCG 5303 33 100.0 33 ................................. TACGACATCGACGAGGAGAACTCCACGCCGAGA 5369 33 100.0 33 ................................. TCCCTCCTACGACGACTTCGCCGCGTTCGGCAT 5435 33 100.0 34 ................................. AAGGAGACGTCCGTCCGTCAGACCGCTACGGTCA 5502 33 100.0 35 ................................. CTTCCAATATCCCCGTATTGCGCAGGGGCGCGGCG 5570 33 100.0 35 ................................. CTTCCAATATCCCCGTATTGCGCAGGGGCGCGGCG 5638 33 100.0 35 ................................. CTTCCAATATCCCCGTATTGCGCAGGGGCGCGGCG 5706 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 75 33 99.8 34 GTCACCTGCCTCACGGCAGGTGTGGATCGAAAC # Left flank : GCCACGAGCCGGTCATGCACGCGCCTGGCGGTGTGGCGCTGCTTGCCGGGCATGAGCCGGTCCGCCTCCAGCCAGCCGTCGACGATCGGCTTGTACTCGTCGAGAATCGACTTCACCCCGCGCCTGGCGGGCGGTTTCGGCGAGCAGTCCTCCATGCCCGCGTACTTCGCGACCGTGCCCCGGTCCACCCCGAGCCTTCTGGCGATCTCCGCGTGCGGCAGGCCCTTCGCGTCGAGCCTCCTGATATCTTGCTGTTGGGACATGGGTATCGTCACTGTCCTTTCCTTCCCCGGGCCGGCGGCAACCGGCCCTGGCTGCTATTTGGTTTGCAACCCGGGAATCTAACAGGCGGAGCGAACCCATGTCTCCTCTCAACATCAGGGATGACTATTCTGCGGAAAAACAGCTGCACATCAAGCGGGAAACACCATGACACTCCTGCCTAAAGAACATTGAACATAAACACCAGAACCTGAACCATGCATGCGAGCCCGTCACCT # Right flank : CTTCCAATATCCCCGTATTGCGCAGGGGCGCG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACCTGCCTCACGGCAGGTGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.10,-8.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 11-4319 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWWZ01000033.1 Bifidobacterium eulemuris strain DSM 100216 Contig_33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 11 36 100.0 38 .................................... CTATAGCAGGCGGCACCGGTCGCCCACTGCTTCTCGAA 85 36 100.0 34 .................................... GTGCAGGACGGTGAGTATTCGACGGACAAGCGCG 155 36 100.0 37 .................................... GACAATCAGCGCGCCGGATACGATCAGGCCTGTGGTG 228 36 100.0 36 .................................... GTAACCTCAAAAACACCGAAGGACAACCGCAACGCC 300 36 100.0 35 .................................... GAATTTGAGATTGTCGGCCCACGAGCGGATCTGAC 371 36 100.0 37 .................................... GACAATCAACGCGCCGGATACGATCAGGCCTGTGGTG 444 36 100.0 36 .................................... CGTAGCAGCTGACGACGGCGCGGTATCGGCCATGAG 516 36 100.0 36 .................................... TGTATGGCAACGAGGTGCGATCATGCCAAGACAACG 588 36 100.0 35 .................................... AAGGAATATCATCAACAATACCGTGGCGACCTGTC 659 36 100.0 35 .................................... TACGAAACACAGATTTACGCTTGGGTGCAAAACAA 730 36 100.0 35 .................................... TTTTATATCACCGTCGGTGACGATGAAGTCAGGTC 801 36 100.0 36 .................................... TTCCATGCGAGCGTCTCGTACCGGCGATTGAAATAA 873 36 100.0 35 .................................... ATCGACATGCTGACCGCCCGCCTGGAGGAGGGCAA 944 36 100.0 37 .................................... CGGGGTAGCGGATACGACATCAGACAGGCCGTGGACG 1017 36 100.0 36 .................................... AGTGCGAATGGAGATGTCGGCACTTTTGAAGTACAG 1089 36 100.0 36 .................................... AATGGCAGTGGACAACGCGACGATCATCAACCGATA 1161 36 100.0 36 .................................... GTATACAGCACATTGATTAATGTTTTGCGAAATGCT 1233 36 100.0 44 .................................... TGTTCGACAGGCCGAGCAATGCCATGACCTCGCGCGGCACCGGA 1313 36 100.0 36 .................................... AACGATTACCCGGAATTGGAATCCCCGCGCAGGTGG 1385 36 100.0 37 .................................... CTTTAGAGCGCCAGCGCTAATGCCGCCAGCCATGACA 1458 36 100.0 36 .................................... CGCATCGAACGGTAGGGGCGGTAAGATTTCACGGCG 1530 36 100.0 36 .................................... GATCCGCAGGCCGACTATCTGGGCGCGGATAATTTC 1602 36 100.0 37 .................................... AAGGTGCATCTCGACGCCGCGCCAACCGACGAGACCA 1675 36 100.0 35 .................................... GAAAACTGCTCAAGCTGGGATGTCAACAGCATGTA 1746 36 100.0 35 .................................... AGTTCCTGCAAGTACTGGTTGGTGTTGGTGGAGAG 1817 36 100.0 37 .................................... GGACAATGATGGCACCGTGGGTACCGCGTACACGAAG 1890 36 100.0 34 .................................... TGATTACGAGGCTTACGCGTGCTTCATGCATGCG 1960 36 100.0 36 .................................... TGATAGCCGGTTTGATTGTTGTCCGCGTACTGGGCG 2032 36 100.0 38 .................................... TGGAATCCCGCCACACAGGGGCTCGGCTTGCGTGTGGA 2106 36 100.0 38 .................................... GTCGAGGAAAAGCGGACCTTCCGTTAGGCAGTGGACCA 2180 36 100.0 36 .................................... CGCTGTAGTTGAAAGCACCTTAAAAGATGAATTCAT 2252 36 100.0 37 .................................... TTGTTAGCCATTTAAGTCTCCTTATTTTCGGTCGCCG 2325 36 100.0 36 .................................... GCGAATCGTATTCCACACTGTCGAACGCTTCGGCGG 2397 36 100.0 36 .................................... TAATCATGGGCAAGCCAGCGACGCAACGCGCGAGGG 2469 36 100.0 36 .................................... GACAATCTGTGAGGACAAGTATGGGACGGAAACGAA 2541 36 100.0 41 .................................... CGGTAATGCCGTCCACCGACATTCCACCCCTCAAACGGGGC 2618 36 100.0 40 .................................... AGCACCGACGGCATCCAGGCATGGTGCCTCGACAACGCCG 2694 36 100.0 36 .................................... TTGAATGGGTATGCCCGTGCAGGTGCCACATGTCAT 2766 36 100.0 36 .................................... CTGAACGCGAAGGTCCAGGAGTTCGCGATGGGCAAT 2838 36 100.0 38 .................................... GTAACCTGATGCCACCGGTCACGTAACAGGTAACGGCA 2912 36 100.0 36 .................................... AGATCCTTCTCCCACGTCGAGGCGTAGCCGGTGAAG 2984 36 100.0 37 .................................... CCGTACAGCGTCGTGGAATGCACGTGCCTTAACGGAA 3057 36 100.0 35 .................................... CAAAACTCAATCACACTGACAGGCATGACGCTTGC 3128 36 100.0 35 .................................... CAAAACTCAATCACACTGACAGGCATGACGCTTGC 3199 36 100.0 34 .................................... CTGTTGGATAAGTTTCTGACGGCGAAGTCGCAGG 3269 36 100.0 37 .................................... TAAAATAGGGCATGATCTCACGCATGGTCTGCCCCAA 3342 36 100.0 35 .................................... CATTCGGGCTGGCCGTAGGGGAGTGGGAGACTGTT 3413 36 100.0 38 .................................... TTCTCTTAGGAGACGGTGATTTCGAATTGGGGTTGGCT 3487 36 100.0 37 .................................... GAACGTGCGCATCAGCAGCGTCGAAACCGACGATCCA 3560 36 100.0 37 .................................... TGGGATGCAGAATCACAAGAGGAAAGAATCCAATACC 3633 36 97.2 37 .G.................................. TGGGCGACCCATAGTCCGCAATTATGTTTCGCGGCGA 3706 36 100.0 36 .................................... AATCAGGCGTATTCGCTATTGTCCGTGTGGGATGGA 3778 36 100.0 35 .................................... ACTGTTGATCTTGTGCGTGACGGTAAAACGATATT 3849 36 100.0 36 .................................... CGTATCGTCGGGGAATTCGGACACGTCGACGGTGCC 3921 36 100.0 37 .................................... GGTATCGATTCCATCACCATCCATTGGTGGGATGACC 3994 36 100.0 37 .................................... ACGCAGAATCGCCGCGATCAGTACGCCATCTCGTGGG 4067 36 100.0 35 .................................... TTGCCCAAGTCCACCGACTTCGTGTGGTTCATGCT 4138 36 100.0 37 .................................... GAGTAACTGCCGCTCAAATCGAGGGAACAGAAGCATC 4211 36 100.0 37 .................................... TCGTACTCGAACACGCCCACCGGCGTCAAGACCCGCG 4284 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 60 36 100.0 36 ATTGCTGGAGTTTCTACTCCAGCACTTCATTGAGGA # Left flank : CCCAAGCGAAA # Right flank : TTGCGCTACATTCCATAATTCGATTTCGT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCTGGAGTTTCTACTCCAGCACTTCATTGAGGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [6.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 7-843 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWWZ01000013.1 Bifidobacterium eulemuris strain DSM 100216 Contig_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 7 33 100.0 35 ................................. CCTTCCAATATCCCCGTATTGCGCAGGGGCGCGGC 75 33 100.0 35 ................................. CCTTCCAATATCCCCGTATTGCGCAGGGGCGCGGC 143 33 100.0 35 ................................. CCTTCCAATATCCCCGTATTGCGCAGGGGCGCGGC 211 33 100.0 34 ................................. CTACCGGGCCTGCGTATGGTTTGGCGGGGCCTCC 278 33 97.0 34 A................................ CCTCGTGTTGGCCCGGTCCGTGGATCAGACGGAC 345 33 100.0 35 ................................. CTCAAGCAAATAGACATTCGTGCACGGGGTCGGGG 413 33 100.0 34 ................................. CGAGCAGTGGGCCGACACCGTGACCTCGGTGGAG 480 33 100.0 33 ................................. TAACAAGGACACCGGCATCGTGCGTTCCCTGGG 546 33 93.9 33 C...........................T.... TCGTTCCGCTGGTCGCAGTGGTGCTTACGGTCA 612 33 100.0 34 ................................. AATGATCTGGGCCATGGCGAGCTTGGTGAGGTCG 679 33 84.8 33 ..G...T.......T.....A.A.......... TGCTTGCCCAACCGGGCGAAAAGAAAAAACCGG 745 33 90.9 33 ....................A.....G.T.... TTCCACGAACCGGCGCTGGATCCGGGTCGGGCC 811 33 81.8 0 ....T.........T..............ACGC | ========== ====== ====== ====== ================================= =================================== ================== 13 33 96.0 34 GGTCACCTGCCTCACGGCAGGTGTGGATCGAAA # Left flank : CGCGGCG # Right flank : CGAAGAAGGCCGGCCCGTGTGGGTCGGCCTTCCGGGATGGCGGGGGAGCGAATGCTGAGAAGCGCCGCTACTTCACGCCTTTGATCATCAGGATGAACACGCAGCCGAGCAGCGCGAAGAAGATGGAGATCGGGAACGCCGCGGCGTAGCTGAGGTTCAGTGTGATGACGCCCATCACGACCGGGCCGAGCATCTGGCCGATGGTGGTGGCGAGGTTGAGGATGCCGAGGTCCTTGCCGGCCTCCTCCTTGCTGGGCAGCACGTCGACGTTCAGCGCCTGGTCCACGGAGGAATAGACGCCATATCCAAAGCCCGCGATGCCGGCGTAGAGGAACATTCCCATGGTGGTCGGCATGATCCAAGGCATGGCGGTGCCGATGGCGAACAGCACGGAGGCGACGACGACGGGCACTTTGCGGCGTCCGATGAAGTCGGAGATGGGGCCGGAGACGATGGATCCGGCCAGGGAGACGACCATGAGGATCACGGACATCGTGGCC # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCACCTGCCTCACGGCAGGTGTGGATCGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.70,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 2 44500-45540 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWWZ01000013.1 Bifidobacterium eulemuris strain DSM 100216 Contig_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 44500 36 100.0 36 .................................... AGCTCAAGCACCTACAACGTGAACAACCCAAGCGAA 44572 36 100.0 38 .................................... CTATAGCAGGCGGCACCGGTCGCCCACTGCTTCTCGAA 44646 36 100.0 34 .................................... GTGCAGGACGGTGAGTATTCGACGGACAAGCGCG 44716 36 100.0 37 .................................... GACAATCAGCGCGCCGGATACGATCAGGCCTGTGGTG 44789 36 100.0 36 .................................... GTAACCTCAAAAACACCGAAGGACAACCGCAACGCC 44861 36 100.0 35 .................................... GAATTTGAGATTGTCGGCCCACGAGCGGATCTGAC 44932 36 100.0 37 .................................... GACAATCAACGCGCCGGATACGATCAGGCCTGTGGTG 45005 36 100.0 36 .................................... CGTAGCAGCTGACGACGGCGCGGTATCGGCCATGAG 45077 36 100.0 36 .................................... TGTATGGCAACGAGGTGCGATCATGCCAAGACAACG 45149 36 100.0 35 .................................... AAGGAATATCATCAACAATACCGTGGCGACCTGTC 45220 36 100.0 35 .................................... TACGAAACACAGATTTACGCTTGGGTGCAAAACAA 45291 36 100.0 35 .................................... TTTTATATCACCGTCGGTGACGATGAAGTCAGGTC 45362 36 100.0 36 .................................... TTCCATGCGATCGTCTCGTACCGGCGATTGAAATAA 45434 36 97.2 35 .G.................................. CTCGACATGCTGACCGCCCGCCTGGAGGAGGGCAA 45505 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 15 36 99.8 36 ATTGCTGGAGTTTCTACTCCAGCACTTCATTGAGGA # Left flank : TATCTGGTGGCATATGACATCGCTGAGGATTATCGACGTAATCGTGTAGCTAAAATACTGCAAACATGTGGCGAGCGACTGCAATACAGTGTTTTTCTGCTTGAGGTGAGACCCACAAAAATGCTCCGAGTTAGGCAGCAACTTGAATCAGAAATGGATCAAAGATTGGATTCGATAATCGTGTGTCCTCTGGGCGCAAGCAGTCAGGCTAGTCAGGAAATGTTGTTCTTGGGAAGGCGAACGTACGAAGACATAGCCACTCCTACAGTGATTTAGCGCCTAGTGTGCTTGAAAAATGACAACTGAAGAGTGTGAATTATCATCGAATATGTTTGCGAGATGTGAATCATCTAGTCATACGCCGTGAACTGCTCGCAGGTGTCTTTGTGCCCTTCGTGGGACGCTCGTGAGTAATAGGTGTTTCATTGCTGGCTTCTAGATATCCACCTCTCGCGGATCGACTTAGAACGTCGGTCTTTCCGGTCAGGTAGGATAAAGCG # Right flank : CGGGGTAGCGGATACGAC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCTGGAGTTTCTACTCCAGCACTTCATTGAGGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 16-2584 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWWZ01000008.1 Bifidobacterium eulemuris strain DSM 100216 Contig_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 16 36 100.0 35 .................................... TTGCCCAAGTCCACCGACTTCGTGTGGTTCATGCT 87 36 100.0 37 .................................... GAGTAACTGCCGCTCAAATCGAGGGAACAGAAGCATC 160 36 100.0 37 .................................... TCGTACTCGAACACGCCCACCGGCGTCAAGACCCGCG 233 36 100.0 34 .................................... TTGCGCTACATTCCATAATTCGATTTCGTTTAAA 303 36 100.0 37 .................................... GCGAGCAATGGTGGCGCGACCACATCAAAACCCTGCC 376 36 100.0 37 .................................... GTTTTGCAGAAGACATGCGAGAAAATAATTCGCACAA 449 36 100.0 37 .................................... TCCGACGTGTTCAGCCCTGTGCTGCCGCAGTCCGAAC 522 36 100.0 36 .................................... TGGCCATGGCCATCGCCACGGCTCTGTTGAACGCCG 594 36 100.0 38 .................................... GTCGAAAATCTGTTCGCGAAACGCCCGAACATTACCAC 668 36 100.0 35 .................................... CAGATCTCCTGCACGCCGTCGGGGAGGTCTTCGAG 739 36 100.0 38 .................................... GAGGGCGTGTAGCTCGGTGTGTACGACTGCTGGTAGTA 813 36 100.0 36 .................................... GCTAACCCCTTCCACGTCGCCTTACATGCGAAAATT 885 36 100.0 35 .................................... GGAAGCACGGTGCAGAACATCGCATACAAGTGGCT 956 36 100.0 37 .................................... GAGGCCGTCGAGGCGGCGGACACCACCAAAGGCTCAA 1029 36 100.0 36 .................................... AATGAGCGGGCGGGCAAATGGGAGACCGACACCAGC 1101 36 100.0 38 .................................... GGGTTAAGTGGGTCACAAGCATTGCCCAATAGATAAAG 1175 36 100.0 35 .................................... ACCGTCGACCTTGTGCGCGACGGTAAAACGATTCT 1246 36 100.0 36 .................................... GGTTACACGTGGCGCAACGTCGAGGAGTGAGGCCTA 1318 36 100.0 36 .................................... CTGCATATTTGGAAGATCCTGTCCGTGTCGGGATTC 1390 36 100.0 38 .................................... CGGCAGAAGCGCTGCACGTTGGTGCATGAGCTGATGCA 1464 36 100.0 36 .................................... TTGAACGTCTGCGTGACGTTCGTGATGTTCCCACCG 1536 36 100.0 35 .................................... GATGGATTCACGTCGGGCGCATGCCATGTCAACGA 1607 36 100.0 36 .................................... CTGGGCTCGGGTATCTTCGACGCGATAGCCGATCCG 1679 36 100.0 37 .................................... ACAGAGCATCACCGAATTGCGTGGGATTCTGAATGGC 1752 36 100.0 36 .................................... CAGTACGCACTACGGATTGGAGGACTGCTGACATGG 1824 36 100.0 37 .................................... ACGGTGGACATGGTTAGTTTCCTTTCTGTTGGATTTG 1897 36 100.0 38 .................................... GAGCGCGATTGGCTCCACATTGTCAGCCGTAGGCGGAG 1971 36 97.2 37 ...................................T GGCATGGGACGGCGCGCAATGACCTCCGCCGCGCCGT 2044 36 97.2 37 ...........C........................ CTGTCGTGGATACAAGGACACGCGCAAGCAGCCTCGG 2117 36 94.4 37 ....................G.......G....... ACGCACTCGTGCAACTTTCTCACCGTCGTCGCCGACG 2190 36 88.9 35 .....C.....C.T.........G............ GCGAGGTCGACGACCTCGCCGTCGCCCGCGACGGT 2261 36 91.7 36 ...........C......T.........G....... CCGTCCTCGTGGGACTGTCTGCACGCCATGTTCCAA 2333 36 91.7 36 .......A...C...G.................... GTGCATTGCCCTCTCGGATAGGCGCGGCAGACCGGG 2405 36 94.4 37 ...........C.G...................... ATGGGAGCAGGGCTTAGGGGATGATGTGAGATTCAAA 2478 36 86.1 35 ...........C...G...TG..............G CGGGACAACAACGACGGCGGCTGAGGCGGTATGAA 2549 36 88.9 0 .G............C...........C......T.. | ========== ====== ====== ====== ==================================== ====================================== ================== 36 36 98.1 36 ATTGCTGGAGTTTCTACTCCAGCACTTCATTGAGGA # Left flank : ACGCCATCTCGTGGGA # Right flank : AGGGCCGAACTCCTGATAGCCTAACTGTTATGACACAGTCTCCCGTTCCCGCTGCTGCACCGAACTACAACCGTACGATGATCGCCTGTTTCGTGGGCTACATCACTCAGGCGGTGATCAACAACTATATGCCGCTATTGTTCGTCACCTTCGCGGCGACGCTGGGCATCGATATGGCGCGCCTGTCCGCGTTGATCACGGTGAATTTCATTACGCAGCTAGTAGTGGATGTGTTGGCCGGGCGGTTTGTGGATAGGATCGGTTACAAGCCCTGTATTATCGCGGCGCATGTGTCGGCCGCTGCGGGACTGCTGGTGCTGGGACTGGTGCCAACACGTGTGTCTGACCCATACTGGGCCATTCTGGTGGCGATTTTGCTGTATGCCTTGGGCGGCGGACTGATCGAAGTGATGGTCTCGCCGATTGTGGAGGCCTGCCCCTCCGAGCACAAGGCCAAGGCGATGAGTCTGCTGCATTCGTTCTATTGCTGGGGACAACTG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCTGGAGTTTCTACTCCAGCACTTCATTGAGGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-25] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [8.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //