Array 1 2317-3866 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJESD010000019.1 Staphylococcus pseudintermedius isolate 16S07408-1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2317 36 100.0 30 .................................... CGATGACAACATTCAAGCGCATTACTACGT 2383 36 100.0 30 .................................... TGATGTACGACAGGAATATATTAGGGTTGT 2449 36 100.0 29 .................................... TATACACTCTAATTCATACCCTTTAGTTG 2514 36 100.0 30 .................................... AAATCAATAGTCATAAATATCAATTACCAA 2580 36 97.2 30 .....G.............................. GTGCTTGAAACTAGTTATAGCAACGCTTTA 2646 36 100.0 30 .................................... GATAATTCTTGTGATAAAGTTTGCTAAAAA 2712 36 100.0 30 .................................... AGATGACACATAAATTTGACGATTAAACTT 2778 36 100.0 30 .................................... AGTAGGAATGTTTGAACCACAAGCATACAA 2844 36 100.0 29 .................................... GTGAATGCTTCGTAAGTTGCATTACCTTG 2909 36 97.2 29 ............................A....... ACGATGGTCGTATCATTGATTCCAGCGTG 2974 36 94.4 30 ...................A........A....... GAACGTCCGTACATTGTTGCAGCCGCATCA 3040 36 97.2 29 ............................A....... AGAAATGGTTGAAGAACAACTAGCAGTAG 3105 36 97.2 30 ............................A....... TTGGTTTGCCCACTTAGCTTCTTTCGACAC 3171 36 100.0 30 .................................... AGAGAAGAAATTGTGGCAATACGGTATTGT 3237 36 100.0 31 .................................... CGTCGATTTCGACATAATCAATCGCCTTATG 3304 36 100.0 30 .................................... TACAAGAACTGATTAAATGCTACTTCTGTT 3370 36 100.0 29 .................................... GAATTTTGCAGTCCTAGTAAGCGATAGCG 3435 36 100.0 30 .................................... TGAGCCTTTATCATTTAGAACAGCTAGAGT 3501 36 97.2 29 ............................A....... GGACAACAACAAGATATTGCTCAAGCCTA 3566 36 97.2 30 ............................A....... TTTCCTTCGTGATTTCTTCTTCTACTTCGA 3632 36 97.2 30 ............................A....... AATGCACGTGCTGTTATGGTGAAAGGCTAT 3698 36 94.4 30 ...........T................A....... CGAAAGTAAAGATAGTATGCAAGGTGCAAG 3764 36 97.2 30 ............................A....... GTTATGATGTTTGGCGATATGGGTCGTCGT 3830 35 83.3 0 T........T................-.CA.C.... | TC [3862] ========== ====== ====== ====== ==================================== =============================== ================== 24 36 97.9 30 GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC # Left flank : TTTTAATTATATTATTTCCGGAATCACATCTTGGCATACACGATATTAAAAAGTTTATACACCTTATAAAGAGATATAAATTTACCACGATTATTTTTACTAATCATCCTTCTATCATTATTAACGAGGAAAACATATTTCTTTGTAAAAGTAATAAGAAGTGCCACGACATCGAAAAAATATATGAAGAATTAATGTTATTTGTTCCTGAAGAAGTAGTGAGTCATCAATTAGTTAACATGATTGCATATCACGAATTTGTTGGTGAAAACCTTTCCGAGTATGAGCGATATTTTAAGTTTATCAATCATTACAATTAGGCTATACTATATTTAACATTATATGATAGAGAAAAGTTGATCCAACGATGAAGTAATGACTATGTGACTTCATTCGTGATGAAGAGGGTTAACTTTATCATCGAGTATCATATCTGACTTCTTTTAATAGTGCTAAGCCTCAATTTTGAAAAGGATTGAGTTAATGTTTTTGGATTTGAG # Right flank : CCTTCTTTATAATCGTACATCAACCTCACTATGCTTTCAAAATAATTAAGAGGCATTGTGGGCTTTTTGTGTTTATACGAAATGTTGTATGAATCTCTCAATCGTGCCACCATGTTATAATAGGTATAAATTGTTCATAAAAGATAAATAGAAAGCAGGGGAAATCTATGGAAGCAATTATTGCAACTCAACCGTTCCAATTAGCAGAAGGTCAAAAGTTTGAAAAAGTATCGCGTGAGCCCCCAACACCAGAGGCGCATGATATTTTAATCAAAGTGTACGCAACAGGGATCAATCCGGTTGATACGAAAATGCGGCAAGCCCCGTTAAATGCTGAGGCACGTGTCCTAGGTTTTGATGCGGCAGGTGTGGTTGAAGCGGTCGGCGATGCGGTTACGGATTTCAAACCGGGTGACCGAGTATATTATTCAGGATCGAATCAACGAGATGGCTCAAATCAGACGTATCAGCTCGTGAATGAAAATTATTTAGCGCATATG # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC # Alternate repeat : GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 130813-132009 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJESD010000002.1 Staphylococcus pseudintermedius isolate 16S07408-1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 130813 36 100.0 35 .................................... TAAAATTAATGAAGAAAAAGTAAAATTCAATAACT 130884 36 100.0 39 .................................... CCTAATCTAATTTTAATCATATTACAAATCACCAAATTC 130959 36 100.0 38 .................................... TACGTCTCCCGCTTCACATGAGACATTCTCTAGTAAGT 131033 36 100.0 35 .................................... TGTCATTAACATCGATTTCCTCAAATATTTCTGAT 131104 36 100.0 36 .................................... GAAGAAGAAAAATATATATCTTTAGAAGAGTATAAA 131176 36 100.0 36 .................................... AAAAAACTTTGGGGTAACATTAGACGGACGCAAAAG 131248 36 100.0 36 .................................... GTGTGAGTTTCTGTGTATAAATATTTTTTGTTTGCC 131320 36 100.0 36 .................................... AACGTCGGCTATTTCCTCAATGTCGCTGTCAATTAA 131392 36 100.0 36 .................................... GATTTTAAACGAGTTTCTATATATAATTCATCTAAA 131464 36 100.0 36 .................................... ATCCAAGTCATCATCGCCAATCATAAAATAATCCTC 131536 36 100.0 38 .................................... TGACATCATCTCACCCCTAAGCTTTCGTTTTCGACGAG 131610 36 100.0 36 .................................... CATATTTTCGTACCCTTTATAAGTTTTAAAGTTGTC 131682 36 100.0 35 .................................... TGCTACCTTCCGCTCTGTATGTTTTATTCATGTCT 131753 36 100.0 36 .................................... TTCTTTAACAGCTTCATCTGACAAATCGTTATACGG C [131766] 131826 36 100.0 36 .................................... TTACTCATTTGTGATTTGAATGCGCCTCTTAATTCT TA [131848] 131900 36 88.9 38 G...G....A.T........................ CGTCGAAAGTATCTTCAATATTTAAAGTAAAGTTTGTC 131974 36 88.9 0 ....G......A....G............T...... | ========== ====== ====== ====== ==================================== ======================================= ================== 17 36 98.7 36 AATCTAATAGAGACCCCGATATTAGGGGACGAGAAC # Left flank : GTGAAAACTGGAGATGAAGTCAAATGTGTAACGTATAGTTGAAAGGTGGTAATACAGCGGTTTTGGCAATTTAATAGGTGATGGAAATGTCAAGGCACAATGCATATTCCGATTAATTTTTTAAATACGAAGAAGTTAGGAATAAGCAAATATTGAAGTTTGCACAGCTACAGTATATTCGGCCAGATGTTAATTATTAAAAAGAAAGTTCCAGTATTCAAAGGAAGAGTAGAAAATGTATGATAATTATCATTAACAAGACTTCGTTTAATTGAAAGCGTTTAAAAAATATAGAAGAAAGTAATCATGTGAATAGGATATGAATTAAGAAAGGTTTATTGTATAATATCTATGATATGTTTTGAAATATTTATAGTTGGTTGAAACTGAAATGTCTAAAAATTGGACAATAGTGGTATTTTTAATATTAAATTTGTCTTATTTCTAGACATGATTAAAGTATAGTTATCCTCGTTATCAAGGTGTTTCTACAGCTGACT # Right flank : CAGAACTTTCAATGTGAGTTGTGACCAATGAAGTATTTAAAAATGATGAGAGATATAGAAGTATGAAGGCAACGTTTTAAAAATTACAAATAATTCACAATTCTGTTGTTGCAAACAAATAAATGTTGTAAAATTAAATTAACATTTTAAGCGATAAAATGGGGTCTTATACTTTTTGGTGAATGTTTGTATTTTTGCATATATTTTAGTCATAGTTATTTAAAGTGTAAGTATTAGTGCTTTTGATTAAAATTTTGAAGAAATAATAAGTGATTAAAAGGTGTTGAGATTGAATATACTACTGTATTGATACAATGACTCACTGAATAGTATCCTTGTTTTTATCTAGGGAGGTGTAAAAATGAAAGATATCATTTACGTTGAGAACCATCATTTTGTCAGTGTTAAAGGGGAAAGTATCAAGTTTAAAAATATTATTGATAAATCAGAGCAATATTTTTTAGTAGATGATATCGAAGCACTGATATTTGATAGTCATA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCTAATAGAGACCCCGATATTAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //