Array 1 5856-4048 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFLK01000017.1 Campylobacter fetus subsp. testudinum strain 12S02225-3 contig00017, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 5855 30 100.0 36 .............................. AGCTGTAAATGAGCAATATAAGCAAGTAACCGCACT 5789 30 100.0 37 .............................. GTTTGCTAAGTTTGCAATGGTTGTAACGCTGCTTCCA 5722 30 100.0 36 .............................. AAGCGACTACCTAGCTTTGTAAAGGAGTAAAAAAAT 5656 30 100.0 36 .............................. ATCACATTTTTAGATATATCAGAACTAGCAGTAATG 5590 30 100.0 36 .............................. GCATTGATATTAAAAAAATGTGGAGATAAATATAGC 5524 30 100.0 36 .............................. TAGAATTTTATTTTATACTCTCTTCCTTGCAAATCC 5458 30 96.7 35 ...............G.............. TGATAAATTCCCTTGCTAATATCCCCTTCGTACTG 5393 30 96.7 35 ...............G.............. TTTTTTTTCTCCTCTGGCAATCTTGCGCCGAGTTG 5328 30 96.7 36 ...............G.............. TTTGCTGCAAGGTCGCTTCTGATCTCATTGTGCACT 5262 30 96.7 37 ...............G.............. CAAGCAGCAGCGAGCTTTAAACAAGATCAAATAGATA 5195 30 96.7 36 ...............G.............. CTCATATCTATGTATGTAAGTGGGTTGTACCGATGA 5129 30 96.7 36 ...............G.............. TTAACTGAACTAAAATATAATCACTATTTAATAGTT 5063 30 100.0 35 .............................. AAATTACAAAGAAATTATCTTATCTTTAGCGGAAG 4998 30 100.0 37 .............................. TTAGCTCTTGCGATGGCTTTATCAAAATTCATATTTA 4931 30 100.0 36 .............................. TCTTTTAATGCAGCTAAGATATCATCTATACCTTTT 4865 30 100.0 36 .............................. GTTTGTATTGCAATGTATGCGTCTTGCAGACACTCC 4799 30 100.0 36 .............................. TCATCTACACGAAATTTAAGCGTTTTATAATCTCCA 4733 30 100.0 34 .............................. AATGAGGGGGCTTGAGCTTTGTTCCATTGTACGC 4669 30 96.7 36 ...............G.............. CGACGAATGCGAGATTTATCCGCAACATTACACACA 4603 30 93.3 36 ..........A....G.............. AAGCCAAAAAGAGATAACAGAAATTTATAAATTTTA 4537 30 96.7 36 ...............G.............. GCAGAAACGCTTGCTGATGCTAAGGTTGTAACAGAC 4471 30 100.0 36 .............................. AAACTAGGTATATTTGTTATTTCTAACATTTTTTAT 4405 30 100.0 36 .............................. AAACTAGGTATATTTGTTATTTCTAACATTTTTTAT 4339 30 100.0 36 .............................. ATAAACAAAGGCTGTGGAACAGATGTCGTATGAGAA 4273 30 100.0 36 .............................. ACTTTAGAATAATGCCAAAAATAGAGAATTTGCAAA 4207 30 96.7 35 .....A........................ AAAAGTAAATGAGTACAAGTCAAATTTAGATAAAC 4142 30 96.7 35 .............................T AACAAATTGTCTTCTATATTTTTGCCCATAGCAGA 4077 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 28 30 98.6 36 GTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : CTTTGATGATAACTTTTTGGCTCTTTTGTGTGATA # Right flank : TTGTCGAATGCCTCTTCTACCACTTCTAAATAACCAACTTGAAAATACACTTTATAAAAAAGCTGAAATTTATTAAACTATTTTTCAAATGGTAAATTAAAATAGTAAAAAATATAATTTTGAAAACTTAGGCAAGAGGTTATTTATATAAGATATATATAAGTATATATAGTATATAATAAAATAAAAAGGATAAACTATGAAAAGTTACTGCTTGAAGTTAGATGATGACACATTTGCACAATTAAATCAAATCGTAAAAAATAGCAAAACAACTATGGCTGAATTTATCAGAAATGCATTAGATCAAAAATTAAAAGAAACCAAAGGTTCGCTATCATACAGGCTAACTACGCTTAGTTACTGCGATAAAAAAGAGAGCGACGAGATACTAGATAGTCTAAAACATCTAAACGACGACGAGTTAAAGATAGCCAAAAAAGAAACCATAAACTTATGAAGCTAGAAATCAACTATACCAAAGTTTCTATAAAGTTTTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : GTTTGCTAATGACAAGATTTGTGTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 37-1711 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFLK01000014.1 Campylobacter fetus subsp. testudinum strain 12S02225-3 contig00014, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 37 30 100.0 36 .............................. TTGTTATTTGCAAATTTTGCAGGGACGGCTTTACCG 103 30 96.7 36 ...............G.............. TAATGCGCCCATTTCATTAATTCACCTATGGCTATG 169 30 100.0 37 .............................. TTGGAAAACTCCTCCGTCTTAAGCTTTACTTGTGCTT 236 30 100.0 36 .............................. CCCCTATTAAATATAACCACCAATGAACCGTCAATG 302 30 100.0 35 .............................. TAAATCTAGTTCTTTTTCGCATATCGTTTTCAAAT 367 30 100.0 36 .............................. TTAGATAGCTTTAAATCTAATTATTCCGAACTTATT 433 30 100.0 36 .............................. CCAGTGTTCTTTATTTCACGAAGGTGATAGCTTTGA 499 30 100.0 35 .............................. TTTATTTTATTTAGCGTTTTATAAGCCCAGTCACA 564 30 100.0 37 .............................. CTCTCAAGCCCACCAAGCTCATCAACCAACCTGTTTA 631 30 100.0 34 .............................. TCCGCAAGGCTTACAAGCTCTGCGCAGTGGCTTT 695 30 100.0 34 .............................. TTAAATGAGGCACTTGCAGTAGATAAAACTACTT 759 30 100.0 36 .............................. GCTTTTAGCTTAGCTATCTCCACTCTATCGCTTTCT 825 30 100.0 36 .............................. TTAAATTCTTGAACTTTGTTCGCTTGATTTATATCT 891 30 100.0 36 .............................. TCTGGGATGACCGCGAGTTTGTTAAAAGGGACATTT 957 30 96.7 36 ...............G.............. TAATATCGGCTGGGTTTATAATAGCCCCATTGCAAC 1023 30 96.7 35 ...............G.............. TAGCCTCGTAAAATAGCCTATCGCTCGCTTTTCTG 1088 30 96.7 35 ...............G.............. TTGCAAATCCCCGCTAAAGATAGCCAAAATTTCTA 1153 30 100.0 36 .............................. CTACAAAAAAACACCCCGCTTAATGGGCTGCTTAAA 1219 30 100.0 35 .............................. TCCATAAGCTAGAGCTAGGTATCAAATTCATAAAA 1284 30 100.0 37 .............................. ACATCGCCACTTATAATAAAGACAGGCGTTATCTTTA 1351 30 100.0 37 .............................. ACATCGCCACTTATAATAAAGACAGGCGTTATCTTTA 1418 30 100.0 36 .............................. CGACGAATGCGAGATTTATCCGCAACATTACACACA 1484 30 100.0 36 .............................. AGAATTATACTTAATCACTCAGGACCTAAGTCTTGT 1550 30 100.0 35 .............................. TTGAATTTTCTAAAAATACCTTCCGGCCATTTTTG 1615 30 90.0 37 ......................A..A...T AGCTTTTTTGAAAGCTGTTTCTACTGCTAAAGTAACA 1682 30 73.3 0 ..........C....AGC.C..A..A...T | ========== ====== ====== ====== ============================== ===================================== ================== 26 30 98.1 36 GTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : ATAGAAAGATAAACTTTTATAGGAGATACAAAATAAG # Right flank : TCACATAGAGCTCCAAAGCAGCAACATTCAAAACGCTAAGAGTATAAATGAGAAAAAAGCAGCTTCTGCGTGGAGAAGTGAGCCTTTTTATGGTAAAATACTTCCAGCAAACTTTGGGCTTCCGCCGTATCATTTTCGTTGCAGAACTGAGCTAGTACCAGTATGGATAGATGAAGAAGAGATCGACGGTGTAAAGATGAAAAATACAAGCCCATTAAGCAAAGATGAAGTAGTTAAGCACATAGACAAAACTGGAGTGGAAAGAGTGCTTAGTAAGCAAAACTATTTTGGTGAGAATAACCACTCTGAGCCATTGTACAAAAGAGTTCCTAAAAGCGATGTTGTAAAGGCTTTAAACTCTATAAATACAATGGCTAAAAATAAAAATAACAAATATATAAACGCTTTCAGTGATAATGGGTATTTTATAGTTTTTAATGGCAATGAGATAGTGACTTGTTATAAACATAAAGATGGTAATAAAGCTACTTTTAATTATT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 264947-264063 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFLK01000003.1 Campylobacter fetus subsp. testudinum strain 12S02225-3 contig00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 264946 30 100.0 36 .............................. AAAAATTCGCCACATAAAAGTAGTCTTGATAATATG 264880 30 100.0 36 .............................. AATCTAGGCGAGAATATCTTTAAAAATTGTGAGCTT 264814 30 100.0 36 .............................. ACTAAAACAAGTGATTTTGATTTGAGAGATTTACGC 264748 30 100.0 36 .............................. GGTGGGTGAAAACGTATTTTTAATAGATGGAACAAT 264682 30 100.0 34 .............................. TTTTTTACTATAGCCCAAATAGCCGCTATTACGG 264618 30 96.7 34 ...............G.............. CGTGCATACTATAGGGCGCTATGTGTTGCTATGG 264554 30 100.0 36 .............................. GGACAAAATAACACATACTCTGTATATTTTTATAGA 264488 30 100.0 36 .............................. ATAAAAAATCTATTCATTTTTTTTCTCCTATGAAGT 264422 30 96.7 37 ...............G.............. TAGACCTATATTTCGTAAATTTATAAAAGATATGGTT 264355 30 96.7 35 ...............G.............. ATAGCATTGTGATAGTGTTTCCTACGTTTAAAGGC 264290 30 100.0 36 .............................. GAAAATAAGTTAGTTAAACATAATTTTAAAGAGTCT 264224 30 96.7 36 ...............G.............. GAGCCAAAAAGAGAGCTAAAACTACTTTTTTCATCG 264158 30 100.0 37 .............................. CTAAGACTTACACCTGTTTTTGATACATTAGAAAACA 264091 29 73.3 0 ..........C....AGC.C..-..A...T | ========== ====== ====== ====== ============================== ===================================== ================== 14 30 97.2 36 GTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : TGTTTAAAATCGATATGAAAAGTTTTTATAATGTC # Right flank : CACATAGAGCTCCAAAGTAGCAACATTCAAAACGCTAAGAGTATAAATGAGAAAAAAGCAGCTTCTGCGTGGAGAAGTGAGCCTTTTTATGGTAAAATACTTCCAGCAAACTTTGGGCTTCCGCCGTATCATTTTCGTTGTAGAACTGAGCTAGTACCAGTATGGATAGATGAAGAAGAGATCGACGGTAAAATTACTAAAAATACATCTGCTAAAGCAGAAGATGAGCTTTTTAGACATATTGATAGTATGGGTTATGAAAAAGTTGCTAAAGCAGATATCTATACACACGGACAAAGCGGATACATTAAACCCAGTAAAATAGAACTGATATCTGCTATGAATAATATTAGCAACCTTAAAACTAGTATTAACAACCCTATAAGGCAAGTTGCATTAAGTGGAAAAATTATCATCATATATCAAGATGAGAGAATTTGGACGGTTATTAAAAAAAATAGCGAAAAACAAGCAAAAGAGTACTTTAAAAACAACACGGA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : GTTTGCTAATGACAAGATTTGTGTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //