Array 1 24726-24393 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGDQ01000002.1 Streptomyces sp. XY152 P408contig10.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 24725 29 96.6 32 .............T............... GCCGTGACGTCCGACCACCAGTCATGTTGGTC 24664 28 96.6 32 ....................-........ AGATCGCCCGGGTGCCCGGCTCGGTGCACGAC 24604 29 96.6 32 ...................A......... GAAATGGTGATCTTGCCGCCGGTGACGGCCAT 24543 29 100.0 32 ............................. TTTCCGCACGTAGGTGGCGGTCACCTGCATCC 24482 29 100.0 32 ............................. ACGCCGACCTGGTCCAGCTCCTCCGGCGCCGC 24421 29 86.2 0 .......................T.G.TT | ========== ====== ====== ====== ============================= ================================ ================== 6 29 96.0 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : CCAGCGGCGCCAGAACCCCTACGTGCCGCCCACCGCAGAACCGCCCATTGGCGATAACGAGAGCGGAGAGAGTTCACCGACAACCTCCCGAACCACCGACACGCCGCGCCAACCTGCACCCGAACACGTACGACCGAAGGAATTTCATGGCCCCAACGAGCCGAGCACGGTCGCGACGGCTCGGGGACCATCCCCGCGGGTGCGGGGAGCAGGAACCCGGCCAGGCGCCCGTACGTCCAGTCCAGGGACCATCCCCGCGGGTGCGGGGAGCAGCTCGACACCCTCACGGCCGAGCAGGTCGACCAGGGACCATCCCCGCGGGTGCGGGGAGCAGCTCGACACCCTCACGGCCGAGCAGGTCGACCAGGGACCATCCCCGCGGGTGCAGGGAGCAGTGGCCGTGGTCCTGGTCCTCATCGACCCACCGGGGACCATCCCCGTGGGTGCGGGGAGCAGGGGGATGGTCCCAGCGTGTGGGCATCCGAGGGCGTCGACACGAT # Right flank : TGTTCACAAGAAAGAACCGGCAGCACCTGTACACGGGTTCGGGCAGCACTCGAAGCTCTGCGGAACCGAACAGTTCATGACCTCGGGCAGCAAGGGCTCCTGCCGGGAGTCCAGCAGGAGCCCACGGGGCGGAGAGCTGCGGAGGACCGGGGCCTGTCCTCGAGGAGCGGCATGCCGGCCGGCACCAGCTACCGACTGCTGCCGGTCCGACGGCCCGGCCTCACTTCAGATGTCGAGTGAAGAACCGGGCCGCGGCCTCTCCCGCGAACTGCGGGACGCCGGTGTGCCCGCCCATGTGGGCGTGCAGGGACTTCTCCTTGGAGCCGAAGGCGTCGAACAGGTCCAGGGCCGCCTGCCGGTCGTTGCCTTCGTCGTCCCACTGCAGCAGGACGTGCAGCGGAACAGTGACCTGCCGGGCCTCCTCGAACATGGCGCGAGGCACGAAGCTCCCGGCGAAGAGACCGGCGGCCATGATGCGCGGCTCGACCACCGCCAGCCGG # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9375-10584 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGDQ01000266.1 Streptomyces sp. XY152 P408contig58.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 9375 37 54.1 45 ...A....T....A..G.C.ACCGA..ATCG..ACG. CGAGGAATGCGTCGCCTTGGTCGACCGCTCCGTTGACGCGGTTAC 9457 37 81.1 35 G.A.......T.....G..A..GT............. CCCGGCCTGGGTTTGGCCGAGGAGGACTACTGCAC 9529 37 94.6 38 ................A....A............... ACCCCCAACCCGGGTTAGAACGAGGAAGTGGCGTACAC 9604 37 78.4 36 G....C......TC..G..AT.............G.. ATCAAATACGGCGCCGACTACTGGGGCTACCGACGT 9677 37 83.8 35 ...TT.........T.G..A................T GGGAAGTCCTGCCGGAGGACGGCGAGAGTGGAACC 9749 37 78.4 38 ..........G...TTG..AT......T......G.. TCCCTGTTCCCGCCGAACCCTACTTAGTGGGCGGAGAC 9824 37 100.0 36 ..................................... TGCCCAGGGCAGTGCGCGTCCTGCAGGTCCCAGCCG 9897 36 83.8 37 .............C.GT..A-.......A........ ACCAGCACCGGCCACACGATGGTGCGAGTCTGCGGCT 9970 37 89.2 35 ..............T.G.....G.............G ACTCGCGGCATACAGTTTACTGTCGCCGCGTTCGA 10042 37 81.1 36 ...A..T.T.......G....AG.....A........ AATACCGACTCCACCAAGGTCGGCGCCGCACTGCGC 10115 37 89.2 35 T..........T....G.............C...... ATCAGCGCAGCCCTGTACGGCCTCGGCTGTGCAGG 10187 36 78.4 36 .........A..T.TT-....A.T....A........ GTCGACCCGTCGGCCGCGATCTTCATAACGCAGCTG 10259 36 89.2 35 G..............G-.A.................. TTCAGGATGGAGAGGGTGCGCGCGCCAGGCCCGCC 10330 37 86.5 35 ......T.....T...G...T.......C........ CACCCGCCTCGGAACCGAACATAAAGGACGCCTCG 10402 37 91.9 36 ............T...G....C............... GACTTTGTCGTCACCAAGAGCAAGCTGGGCACCCTG 10475 37 75.7 36 ...A....T...T...A...T.......TGG....G. GACTGCGGCATTGAGCTGCTCAACCTGGGTGGCAGC 10548 37 54.1 0 ............T.T.G.ACA.GT.TGC.GCG.TGT. | ========== ====== ====== ====== ===================================== ============================================= ================== 17 37 81.7 37 CTGGCGGTCGCCCTCCCGGGCGACCGAGGATCGCAAC # Left flank : CTGCACTATCCAGAGGTCGCGAGCAGAATGCGGATCGTCGACAACGAATACTCCGTGGCCGTGGTCGTCATCCGCCCCCGGCTTGAAGAAGAAACCCGACAGGCTGCCCAGAAGGCAGTCGACCAGCTCCGCCGCGGCCTGCCGACGCCCGTGACTTACCGTGCCCTGCAGGAGCACATGGCGTCCATCCCCGAGCGGGAACTGGAGCTGGCGATCAACGCCGGCCACGCCATCGAAGTCGCCGGTGACCTGCACCAGTGGGTCGGCCCCTACCATCCCCAACGAGGTATCGAACCCCCTGCATGACCATTCAGACCACCGAGCAACGCCTCACCAGTAAGCTGGCGGAACTGGAGCCAGCCGGCTGCCGAAGTGTGGCGATCAGCTTGCAGCAGTGAAAATTCGAGTGCTTGGAAAACCGAACCCGTCGCGGTGCTCGCCCTCTGGGCGACTGAGGATCGCAACTTCACCATGACCATCCCTGGCTGGGGCACCACCCT # Right flank : CCAAGTTGGAAGAGGCTCAGAGTGTCCTCATGAGGAGAACATCGACAAATGGCAGTTTCCTGCCAGCTCTCGGGCGCCGACAAGACCAGAAGCCACCCCACATACGGTGGGGCACACCCACATACGGTGGGGCACAGGCGCGGGTGCGGGCCGCGGCTTCCGGCCGAGCCACCGCAGGGTTTCAGCTGGTGTACCGTCCACCGACACATTATTGGCGGCGGAGGAGTTGAAGGCTTCGGATGATCGAGTTGAAGATCCCGAAGATCTACTGGGACGACGAGAAGGCTGTGAGCCTGCTGGGTGAGTACTTCACCCGACGACGCTCATGCGGCGACCTGTTCTATTCCGGCGCGTGCTTCGAGAGCCTGGGCGGGGGCGGGGACGCCGAGTACGTCGCGTACTGCTTCGACAGCAACGACCTGGTGGCCATCACCACGCTCAGTGTGTCCCTGGAGCCGCACGGGGTGATCAACCTGCTGACCGACCCCGACGGGCACTGG # Questionable array : NO Score: 2.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.09, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.13, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGCGGTCGCCCTCCCGGGCGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-17.50,-18.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [48-50] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //