Array 1 143860-142281 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRML01000004.1 Phocaeicola plebeius strain AM09-36 AM09-36.Scaf4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 143859 47 87.2 30 C..CG..A...TA.................................. ATCTAATAAATCAGCAAATAAATAATATTA A [143850] 143781 47 100.0 30 ............................................... ATAAAATTATTTGTGCTATTTGATTTTTAA 143704 47 100.0 30 ............................................... TCTATCTCTACACTAATCTCTAAATACTCA 143627 47 100.0 29 ............................................... TTTATATGATATATATAAATTAGCAATTA 143551 47 100.0 29 ............................................... GAAATATAAAGACGGATATTTGAGGATTG 143475 47 100.0 29 ............................................... TCCTGAATTTATCGGTAAGGTAATGGCGT 143399 47 100.0 29 ............................................... TTTAAAATGAAATGATATGGAAAAACTTG 143323 47 100.0 30 ............................................... TTCCTTGCTCACAAATCTCTTTAGCTATAA 143246 47 100.0 29 ............................................... TTTTAATTCACTACATATACATTCATAAT 143170 47 100.0 29 ............................................... TTGCTAGTATTACACCTCGCGTGGACTAT 143094 47 100.0 30 ............................................... TAATTCTCAAATCTTGAAAAAAATCAATAT 143017 47 100.0 29 ............................................... TAACTCTCATACTATTCTTCGTACTTCTT 142941 47 100.0 30 ............................................... ATATCAACCTTTCAATTCACTTTCTATCTT 142864 47 100.0 30 ............................................... GCTACATAGAAATCCTGGAACACACCTTCG 142787 47 100.0 29 ............................................... ACACAACTAATTTGCTTTATAATCTCTTA 142711 47 100.0 29 ............................................... TGATTCTTGGCTTTCCCATATTGTTTACA 142635 47 100.0 30 ............................................... CAAGAGAGAGGATACCGGTACATATCAGGG 142558 47 100.0 30 ............................................... GTGAAGGTAAGAGTGGAGATGATGTTAATG 142481 47 100.0 30 ............................................... AAGGAAGAAACTATCAGGATGCGGAATCGC 142404 47 100.0 30 ............................................... AATTCATAATCATTTTATTTACATCAATTA 142327 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 21 47 99.4 30 GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATTAGAAACAAC # Left flank : TATACCCTAATAAGCTGCCGGAAAGTGAACGGGTAT # Right flank : TTGTTGATTGTTTCTTGTTGTCTATCAGTAGGTTATAAGTAAATTTAGAAAAAGAAAAAGTTGTTTCTTGAAATAATAAATCCCATATTAACCATGGGATTTATTATTTTAAAAGAGTTCTAATTGTTGTCCTGGTGTTTTTACCCCACTTGCTTTCTTGCCATAAAATAGCTCAATTTCTCCAAACTGTTTGTCTGTGATACATATAATTCCAACTTGACCATATTCAGGTAGAAAGGATTTTACTCTTTTTATATGCACTGCTGCATTTTCACTGCTTGCACAATGGCGTACATAGATAGAGAATTGAAACATTGTGAATCCATCTTTTTGTAGATTTTTGCGAAAATCAGTATAAGCTTTTTTGTCTTTCTTTGTTTCTGTTGGTAGGTCAAAAAGAACTAAAATCCACATAACTCTATATTCGCTGAAACGTTCCATTAGAATTCAGGATAAATGATTTTTCGTGATTCTCCAGAAAAGCATTTATATAGTGATGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATTAGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.21%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.50,-1.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 1533-103 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRML01000059.1 Phocaeicola plebeius strain AM09-36 AM09-36.Scaf59, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 1532 47 100.0 30 ............................................... ATTTAATGCAATGAAAACAGTACCATATAT 1455 47 100.0 30 ............................................... CAAATGGTCAGCCTTATCAGCATCGACCGC 1378 47 100.0 30 ............................................... TCGAACTGACAAGAGCACAGGCAGCCAAGA 1301 47 100.0 30 ............................................... TCTTACCGCATCACTATCATTGCAAAACAA 1224 47 100.0 30 ............................................... AGGATGGTGCTCCAATAACCTACACGGAGA 1147 47 100.0 30 ............................................... TATAGCGAGGAACATAACCAAGCTGAGAAG 1070 47 100.0 30 ............................................... TTTTCTTTAGAAGTTTAGCTTTTACTTATA 993 47 100.0 30 ............................................... TATAATACCAAAAAGTAATCAATTAAAGCT 916 47 100.0 30 ............................................... CTTAAATATATTATAGTTTATTTACGTTTT 839 47 100.0 29 ............................................... CTCAAATATTTACTACTAACACTCAACTC 763 47 100.0 30 ............................................... GTCAGCACTTCAAAACCTTCTCAAAACACA 686 47 100.0 30 ............................................... AACATAATTAAATTCAATAAATATATTTAT 609 47 100.0 30 ............................................... TTAAAAATATATTTTAAATAACTCAATCTA 532 47 100.0 29 ............................................... TATATACGTTTATTCTCCTTTTCCGTTCT 456 47 100.0 29 ............................................... AAAAAACAAATAAACTTATTTATAATATA 380 47 100.0 30 ............................................... TTATCAATTATTATAAAACGCTCTATCTCT 303 47 100.0 30 ............................................... TTATCAATTATTATAAAACGCTCTATCTCT 226 47 100.0 30 ............................................... ACAAAAATAACACTATACAAACATCTTTAC 149 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 19 47 100.0 30 GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATTAGAAACAAC # Left flank : GGCCGACCGTGAAATCCGTACAGGGCCTTACGGTCTGGTGGGTTTCTGGATTGGCGGTACGAATGAGCTGGTTCGTGAAATCCGTTTCTGGAAGACAGCCCGCACACCCCAGCAGTTGAAGCAGTTCATGTGGAAAACGGTAGACGGAAGTGACGAAAATCTGCTGCTGTATTATCCGTTGAACGGAAAGAAGCGCAACCTTGAAACAGGAGAAATCACCGAGGACGAAACCATGCTTTGGGATTTCAGTAACAATGCCAAACATCTCCCTCTTCCTTCAGGGGCTAAGTTTGACGACAATGATGGAAAAGGCTTTATGTTCCCTTTGGTTGATTAATTATAGGTTTTATTAATGAAGAAAGGCTGTCTCCAACACTCTGGTGTGGAGGCAGCTTTTTATGTGTTATTATAGGGACAAATGATATTTAAATATAGAAAAACTTTTAGTATCTTTAAACAACGGGAAACAACTATCACTCCAAGAGCTCCCGTCTTCTTGT # Right flank : CTTATTCCACAAAAACTCAAGAGGGACAAAAGTTGTGATTTGCTTTCATTTTTGCATATTCCGGCGGATACCCGTTCAGCATTTCCGGTGATATCCGTTCAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATTAGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.21%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.50,-1.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //