Array 1 9313-5293 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRFR01000017.1 Clostridium perfringens strain 79385-3 17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 9312 29 100.0 36 ............................. TAGGAGTTTTTGTATAATTTCTTATATGGGAAGTTG 9247 29 100.0 37 ............................. ATTTCCACATCATTAATGGTGGAAGGTAAGGGATTCG 9181 29 100.0 36 ............................. TTAATAATAAAAAACGTAAAAAAAAAGAGAGTAAAA 9116 29 100.0 37 ............................. TTCTTTGACTTAATAGACTTAGAGTTTTTACTACAAG 9050 29 100.0 37 ............................. AGATGATCTAACTCCAGTTAGAATTCAAGTTTGTCAT 8984 29 100.0 36 ............................. ATCTAAATTCATCTGTTATAAGAATAGTAGAACGTA 8919 29 100.0 36 ............................. TGAATATGTGTATTCATAAGTATTTTCTTTTAATTT 8854 29 100.0 36 ............................. CATGTGTTTTCTTTTTAGACATTACATTCTCACCAT 8789 29 100.0 36 ............................. CATTTTGAAGTTTCATATGTGAATATCTAGTCATCC 8724 29 100.0 36 ............................. CGCTTAGAGGTTGCATAGTCTTAATAATCATTAACC 8659 29 100.0 36 ............................. TTTGCTATGACAAAAATGATGTTATTTCCTAATTTT 8594 29 100.0 37 ............................. ATAATTATTGGTTAAGCTTATTTTGATTTAGCAGAAG 8528 29 100.0 37 ............................. CTAAAAAAAATTAATTGTTTTGTGCTATATATAAAAA 8462 29 100.0 36 ............................. AAGTTTCTATTGCTTTACATACTGAATTATCTTCTG 8397 29 100.0 36 ............................. TCTTTCGGCTTTTCGTTTCCAAAATAAACCGATTTA 8332 29 100.0 36 ............................. AAAACAAACAATTATGCAAAATAAGACCAAAAGCAA 8267 29 100.0 35 ............................. TCAGAATTAGTTTTTGTTAATACATACGACAATGA 8203 29 100.0 36 ............................. TGTTAATCTATTTTCTGATATAGGAAGTTTATTAAG 8138 29 100.0 37 ............................. TCATTCGTTTCATTTGATTCTAGTCCAAAGTTATTGG 8072 29 100.0 36 ............................. AGGAGTTTTGGATTAATCAACAAAGGATAGCAGATG 8007 29 100.0 37 ............................. TTGTACTGACAAGAAACTGTAACACCTTCATCACCTA 7941 29 100.0 36 ............................. TACTTTAAAGTTTCTTCTCTATAAGGTATCTTTTTC 7876 29 100.0 36 ............................. TTAGGAAAAGGACAAAAAGAAGAATTAGAAAGATAC 7811 29 100.0 37 ............................. TACAAAATAAAAAAGCACCAGGAACTTTAATTAATTC 7745 29 100.0 37 ............................. CCCCAACGGTTTCTAAATGTATTATCATTCTCTCCGG 7679 29 100.0 37 ............................. TCAATCAAATTTTTACTTTCACAAACTTTTTCATGAG 7613 29 100.0 37 ............................. GATTATGTGGTTAATAAAATTACTAATATTACAGATC 7547 29 100.0 37 ............................. TGTTGTGATAGATATAAACAATGTGAAGAAATAGAAT 7481 29 100.0 36 ............................. TCTTTACCTTGTTTAACTTCACTTATTATAGTTCCA 7416 29 100.0 37 ............................. TATAAATATCTCTTCACATATTCAAAGTTCTTAGTTA 7350 29 100.0 36 ............................. GTTCAAACTTTTTACCTTCATTAAGCATTACCAACC 7285 29 100.0 36 ............................. ATGTGAAACTTTCATAAAGGCGAAAGTTAAGCTTAT 7220 29 100.0 37 ............................. GTGTTTCCTTGCTATGCAATAGGAGAACACAAAGGAG 7154 29 100.0 36 ............................. AGCTGTATTTTTAGAGTTAAAGACTTTTATATTACT 7089 29 100.0 36 ............................. AGGTAAAGCTCCAACATCAGGAGTACTAACAATATC 7024 29 100.0 37 ............................. TGCAAAAACACATGGTTTATCATAAGTTTTCAAAAGC 6958 29 100.0 37 ............................. CCTTTTATTCTTACTGTATCTTCATAAATTTTGAATT 6892 29 100.0 37 ............................. TTAAAGGTAGCAGCTTTAGTAGTTATTTTGATTTATG 6826 29 100.0 36 ............................. AGCATTATTTTAACTTCATCCTCAACTGCAAGTTGA 6761 29 100.0 37 ............................. TTAACAATAGAAGGACTAACAGCACCAACACTACTAA 6695 29 100.0 36 ............................. ATTTAAGTAATGCAGGTAGAGAAAGTGGTAAAAAAC 6630 29 100.0 37 ............................. GGAAGTAATTCATATTCTATGAAAGAGAGAGAAGGAG 6564 29 100.0 37 ............................. ATTATAATTTCTGTTTTAGGTACTTTGGGTGTTACTT 6498 29 100.0 37 ............................. TAACCACGATACTGAGCAAAACTAGGAAAAGTATAAG 6432 29 100.0 36 ............................. TAAGTAATAATTGAAAAACTACAACTTCATGGAACT 6367 29 100.0 37 ............................. AGCTTAAATTGTTTTTCTATTATTACTCTATGTGCTC 6301 29 96.6 37 ............A................ ATTATTAGTTTTTCTCATTCTTCTTATTTGATTTTCG 6235 29 100.0 36 ............................. TTAAAATCATTAAAAGAACTTAAAACTTTATATTTA 6170 29 100.0 36 ............................. TTATTTTAGCTGTAATTAATTCTAAGTCATCTTCAT 6105 29 100.0 37 ............................. TAGTGATTACATAAAGTATTTATAATATCTATACCAG 6039 29 100.0 36 ............................. TTAGGATTCTGGACAAATCAAGATATATTAAGATAT 5974 29 100.0 36 ............................. CTGAGTAAAATTAGCTTGTCTAGCAGGTTTCTTATC 5909 29 100.0 36 ............................. AATGTAATTAAAGGGATAAAAGAAGGACAAACTATT 5844 29 100.0 37 ............................. ACAACAATATTAGTAGTTATATTATTTGCTTTAGAGC 5778 29 100.0 35 ............................. TACGAAATGATGAAAATAGTTATCTTGAGTGGAGA 5714 29 100.0 36 ............................. CAAATATATTTATAGGTTTATCATGGATTTCTATAA 5649 29 100.0 36 ............................. TGATGTACATATGGAGCATATTCAGCTGTACAGCCT 5584 29 100.0 36 ............................. GAATTAAATAAATATGAAATAGCATAATATAGAAAG 5519 29 100.0 36 ............................. GGATCAGGAAAGAGTTTGCACGTGGCACAAGAAATT 5454 29 100.0 37 ............................. AAAAAAATGGAAATTATTTAGGGTGAAAAATAGCTAA 5388 29 100.0 37 ............................. AAAGAAGCTGTATATAAAGTTTTACATGGTGCTGACA 5322 29 86.2 0 .................GAA....C.... | T [5295] ========== ====== ====== ====== ============================= ===================================== ================== 62 29 99.7 36 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : AACTTAGAAATATAATATCTTTTGATATAATACCTCAATGTATTTATGAGAAAAATGAATCAGAAATTGAAAGCTTACTTGAAATTATAAATGATGAAAAAACAGATAAAATAAATAGAATAAAATCCATAGATAAAATAAAAAGTTTTACAGTATCAGTTGGGCAATATGATATTGAACTTTTAAAAAATAAACTTATTATGGAGTTAGAAGTAGGAAAGTATGAAAGAATTCCAGTATATAAATGCAATTATTCAGAGTTAGGATTTACTAGAAACACTAAAGAAGATGTATATGATAATTTCATATAAAACTAATTTTGCAGTAGATCTATTTTCTTATAATACTAGCTGTAACCAAGTAATATCAATGGTTAGAAGGAGATTTTTATTGATACACTAAAACATTACTGATGGTCTACTGCAAAATTTTAATATTTATGATAAAATTAACAAGAGAGAATGAGGCTATTACTAGCTTTTAGCATTTTGAAATTTGGG # Right flank : ATATATAAAGCATCTTCAAACTTAAAATCATACTTTTAAACTTATAATTTTTTGTTTCAATAGCAAGTGAACCTAATGAAGATATATTTCCAACAATGTTTTGGCTTGCTTTATATACAACATTGCCATTTCAAAGTGTAATAAATCTTTTAGTAGGCTATAACATAGAGAGTTTGTCATATTTAATACTTCCAACATATATGGTAACATTAAGCTTATTAAGTTATAAGGTACTTAAATTTAAACCTCAAAAAAATAAACAAGATAAGTAATTTTAGTTTTATAATAAGAATTAAAAAGTAAAATGGACATGATATCTGTCCATTTTTACTTAATTATTGATATATACTTATTAAATTTAGAACTTTGAATCTAATAATCTATGTATTTAGCAGTTTACATCTAATAGCTCCCTTGAAATTTCTTTAAATCTTTCATCAGATATACCAAGTTTTTTCTTAAATATATCATCATCAATTCTAGCAACAATAACCTCATTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //