Array 1 5730382-5733645 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBXL01000001.1 Thiocapsa rosea strain DSM 235 Ga0242571_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5730382 29 100.0 32 ............................. ACCGAGGAGTACATCGACGCATGCGCGCTGTG 5730443 29 100.0 32 ............................. GGGTTGTCCTCGCCGTCGTGCGTCGAGATCAG 5730504 29 100.0 32 ............................. ACCTTCGCCCACAGCGCGCATGCGTCGATGTA 5730565 29 100.0 32 ............................. TAGGGATCAGCCGGGTAGACCGGCTCGTGAAT 5730626 29 100.0 32 ............................. ATGTCCGTCCTTGTGCGCGAAAACGACGACCC 5730687 29 100.0 33 ............................. GAGATCAGGGATGCGGACATCGCGCACTACATG 5730749 29 100.0 32 ............................. TCCACGTCGGCATCAAGGCGATGAGTGCTGCA 5730810 29 100.0 32 ............................. CTGGTCGACCAGGTGCGCCATGTCGGCGACAT 5730871 29 100.0 32 ............................. ACGATGAAAGCGCGAATCACGACAGACAGCAT 5730932 29 100.0 32 ............................. GCGGTTGCGGCCGGCATGGTTGCCGAGTCGCA 5730993 29 100.0 32 ............................. CTCTCCACGTTTTGCGTGAAGGGTTGCGAATC 5731054 29 100.0 32 ............................. CTCTCCACGTTTTGCGTGAAGGGTTGCGAATC 5731115 29 100.0 32 ............................. TAAGGGACGTTGCGCGGCGCCAAAGGCCAGTT 5731176 29 100.0 32 ............................. CAATCCAAGCGTCATACATGCGCCGCAATTGC 5731237 29 100.0 32 ............................. GTGGAGCAATCCACGATGCTCAGCACGATCGA 5731298 29 100.0 32 ............................. CGATTGAGTCTTCGGATGCGAGGGGTTCGGAC 5731359 29 100.0 32 ............................. CCGGAGAACGCCCACTTCATCCGGATCGGACC 5731420 29 100.0 32 ............................. CCGTATTCAGTCACTCCGGCTCGAAGTACGTG 5731481 29 100.0 32 ............................. GCCAGCACCTTGCCCCAGGTCGTCTTTCCGGT 5731542 29 96.6 32 ............................C CGACGTGAATCGGGAAGCAGGTCGGGATGGCC 5731603 29 96.6 32 ............................T CGCCAAAGTCGAAACCGCCGAGTGCATCCGCT 5731664 29 100.0 32 ............................. CATGCAAGATGTATGGTCATCAGTGGCGATCA 5731725 29 100.0 32 ............................. CCTGCGTGCCGCTGGCCCACAGCACCCAGTTG 5731786 29 100.0 32 ............................. GTGAGATTGAGCGCATCGGTCGCATTCGGCGC 5731847 29 96.6 32 ............................A GCCGCGCGAGAAGCGCACCGGGCGCTGGAGGC 5731908 29 100.0 32 ............................. GCGCATCAGCTCGTCGTGGCCATCCAATAGGG 5731969 29 100.0 32 ............................. CGATGTCCAACGCCCGAGCCGAGCCCTTCAGG 5732030 29 100.0 32 ............................. CTGGCCGACCTGGAGGCATTCGAACTGCACCC 5732091 29 100.0 32 ............................. CCAGCGCCCGAATATGCAGACCTGTGCAGGCT 5732152 29 100.0 32 ............................. CGATTGGAGCTTCTGGAGCATCGATGCAGTGA 5732213 29 100.0 32 ............................. GAAGGGATCTATGCCGCGCTGCTCCAAGCTCG 5732274 29 100.0 32 ............................. TCCGGCTGGCTGGTTACCGATCCCGCCGTGAA 5732335 29 100.0 33 ............................. ATTGTCGAGGCCGCATCCGCAACCAAGGCGGAC 5732397 29 100.0 32 ............................. TGGCAGGGCGAAGAAGAACTGCTCGCCGAGCT 5732458 29 100.0 32 ............................. CCGCCATACGCGAGGCAGGCGGAGACGGCCTT 5732519 29 100.0 32 ............................. CTCCCACTCCTCCGGCCCCATAGACCGCTGAA 5732580 29 100.0 32 ............................. CATAACGACCCCGTCAGGATCTGGGTGCCCGG 5732641 29 100.0 32 ............................. GCCCTTGCGCGCCGCAAGGTCAAGCTCCCGCC 5732702 29 100.0 32 ............................. GCCTGATTCCGTACTGTCTGGCTGCTGGATCC 5732763 29 100.0 32 ............................. GTGATCTGCTGCGTGCTCAAGTCGCACGCAAC 5732824 29 100.0 32 ............................. GCGTGAATGCTCATACCAAATCCTCCGCCGAG 5732885 29 100.0 32 ............................. GCGTATGATACCGCCATCGCCAAAAACCGCCC 5732946 29 100.0 32 ............................. CCTGCCTCGATGTCGTCGGCGAATCGCACAAC 5733007 29 100.0 32 ............................. ACGACGCCGGTGATGACGGGCTCGCCGGAGTT 5733068 29 100.0 32 ............................. TGTTTGCTGTGTCGACGGTTTTTGGTTTGGGC 5733129 29 100.0 32 ............................. GGCGAGCGGGAGTAGGGCGCCGCTTTCCGCTT 5733190 29 100.0 32 ............................. GACGCCCGATGAACAAGCTCCTCCTAAACGCC 5733251 29 100.0 32 ............................. GACGCCCGATGAACAAGCTCCTCCTAAACGCC 5733312 29 100.0 32 ............................. GCCGCCATGGCGGTCACGATGTGGGGTGGCGA 5733373 29 96.6 32 ............................T GGCGCTCGATGCGCCCGGCATACTCTTCGCGC 5733434 29 100.0 32 ............................. GCTGCCACGTCGCCTCGCTGTTCGTGATGGGT 5733495 29 100.0 32 ............................. AGCCCGAATGAGCACCAGCATCCACCGCATTC 5733556 29 100.0 32 ............................. GGCGCCAACTGCAAACAGATGGGCTGCAGTAC 5733617 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 54 29 99.7 32 GTGTTCCCCGCGCCCGCGGGGATGAACCG # Left flank : GATCATCCCGCTGATCGAGGAGGTGCTGACCGCGGGAGGTCTGGAACCGCCCTACCCACCGAAGGAATCGGCTCCCCCGGCCATCAAGGAGACGGAGGGCCTGGGCGATGTTGGTCATCGTCACTGAGAACGTCCCGCCGCGGCTGCGCGGCAGACTGGCGGTCTGGCTGCTGGAGATCCGGGCAGGCGTCTATATCGGCTCCCCCTCGAAGCGGCTGCGCGAGTTTATCTGGAAGCAGGTTCTCGAAGGCGTGGAAGACGGCAACGCCGTCATCGCCTGGAACACCAACACCGAATCGGGATACGATTTCGCCACCGTCGGCAAGAACCGACGTATCCCGGTCGATTTCGATGGTCTCCGATTAGTCAGTTTTCTGCCGCCAGATGAACAGCCAAAAGCTCCTTAGCAATTTAGATCTGTCCCTGTCGAAAGACGGGGTTTTTTCGGTGGAATTTTGCGTGTCCGATTTCCGGAGTTGAATCAGCAGGATGCTGACAGT # Right flank : GCCGTCATCGACTGCCAGGAGTAAAGAGCTGTAAATTAATAAGTGGCCGATTTCCGGTGATCTGAGCGAGGCTTGATGAGGTAGTTCCAATCCATGCCATGAAATCTGGCAGGAACAAGATTCACGGCGCGAAACTCGTCGTCGCTCACGGAAATGCCGGTCGGATAGCCTGCCTCGTCGAGCTCGGCTCGGATCTCCAATCCTTGCGTCGTCGTGGTGTTTGCGATGAGGTTGACGATGACTTCGTGATTGATGAGCGGTCGGCCCCGCCAGTTCTCGGTGATGTGACAGAACATGCGATGCTCGATTTTGTTCCACTTGCTGGTGCCGGGCGGAAAGTGGCGCACGTAGATGGCGAGTCCGAGCTCGTCGGCCAGTTTCTGCAACTCCACCTTCCAGAGCCGGTTGCGGCTGGCATTGCTGCCGCCCCCATCGGCGGTGATCAGCAGCGACTGCGCATGCGGGTAGCACTGGTGTCCCATCCGAGCCCACCAGCGACG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 5734994-5736130 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBXL01000001.1 Thiocapsa rosea strain DSM 235 Ga0242571_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================================================================================================================================== ================== 5734994 29 100.0 32 ............................. TGATCCTCGAACACGGCCACGACTTCGCCTCG 5735055 29 100.0 32 ............................. TTCTTCATCAGCCATAACCCGGACGCCTGGGC 5735116 29 100.0 32 ............................. CCCGTCCAGGTCGAGCCGCTCGATCGCCTCCG 5735177 29 100.0 32 ............................. GCCAGTGCGTTTTCGCCTTTCAGCGCAGTCGG 5735238 29 100.0 32 ............................. AAAAACTGTTGCGCGTCGGGATGACGATCGCC 5735299 29 96.6 32 ...G......................... ACGCATCGGACGTGCTCGACAACTGGTCCGAG 5735360 29 100.0 32 ............................. GATCCGGCCCATGATGGGTTTGCGAATCTCGA 5735421 29 96.6 32 ...................T......... CCATTGCCGCCCCGGAGTGCGCCCGAGCGACG 5735482 29 96.6 32 ...............A............. GATGCGATGTTTTCGTCTGGGTACAATCCCGA 5735543 29 100.0 32 ............................. TGAGCGGGGCTCATGGGCAATGACGAAATCGA 5735604 29 100.0 32 ............................. CGCCCAGAGGGTCAACGGGATTGGCCCAACGA 5735665 29 100.0 32 ............................. TATCGCTTCGTGGCGACCGCAACGCCGAGCCC 5735726 29 100.0 32 ............................. ACACTTACCGGGCTCGCCGATGAGTGTGGCAC 5735787 29 100.0 32 ............................. CTCGACGAGCGCAAGTCCACGCAGAGTGCGAT 5735848 29 100.0 32 ............................. CGCTCTCGTTCGCGCTGCGCGATGAACTGCGA 5735909 29 93.1 164 .C.......................G... GCCCTCGGCTTCCGATGTGTTCGCGGATGGCCTCGTTCGTAACTTCGGCCATCGTGTCACCTGGCGCAGAGCGCCACGGGGCATGCGTGACACCGCGGAGCGGATGTCACGAGCGCTTTGGGTCTTGGGTGGCCGGTTTAATGAGCGAGCACTCGCGGATCTCA 5736102 29 89.7 0 A..........C..T.............. | ========== ====== ====== ====== ============================= ==================================================================================================================================================================== ================== 17 29 98.4 40 GTGTTCCCCGCGCCCGCGGGGATGAACCG # Left flank : TTGAGCAACTGCGCTACTTTGCTGTGACTGACCCCATGACCTTGTCGCGCCAACGCTTCAGCGAGCTTGCGTGTGCTCTTGCAGGTCCAGCGCAAGGGGGACATGGGATCGCCCCGCGCACTCGGCTCCACCAAGGCTTCCAGTGCCTCGAGTAGTTTCGGATCCTGTGCCGTCACCGCATGCCGGCCTCCTCCGGAGCGCCGTATCCGACCCGCAGGTGATGGATCCGATGCCTCTTCACCGCGCATTTCCTCGCAACCACGCTGAATCGTGCGCTCGCCTAAACCGGTGGCTTGAGCGACGGCGCGGATGCCGCCGTGACCGAGCTCCAGTGCTTCACACGCCGCCCAGTGCCGACGCCCCCGCTCGTCCAGCACGCTTTGCAAGCGCTGGAACTTCCGCCTTACGCGCTCAATCAGTGCCGGTTCGACCATGCAGAAAACATGGCACAACATGACCAAATCGGCCAGTTATTTATTTACGACGTCTAACCGCAAGGC # Right flank : GTATCCGTTCGCGCTGAGTGACGGACCATCGGTACCGAGGTGGACAAGAGCCGTCGCACCATAGTCCTAAGGTTCGGGTCCGCAGAGCGTGATCACTTCCACCACTTTTCGCTGGCTTCCGCCGGCGATCGCTCCCCAGGATCCCCTCCCCCGGCAAGGTCGCTGGGTTCGCTCTCCGCCGAATCGAGTTCTCCGGCAATCCGGATTGCCTCTCGGCGCAGCATCGGGTTGGAATAACCCGCCGTCGCCTCCGCAATATATTCGGCGATGAATCGTTCGCGATCGCGCCGTGCGACCAATCGCGCGATGGCCTCGCGGAGGATTTCCGAACAAGACCGACCGGTCAATCGAGCCTCCAGATCAACCTTTCGCTCTAAGTCATCGGGCAACAGCACGCAAAGGACGGCCATAGTATCGGACTCCGACAAGAAACAGTTTGCAGACCGGCTCGGCGCCACGCGCCGGCATGAGTTGGACAGAGCATATGACGATATTGGTCA # Questionable array : NO Score: 5.41 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:-0.76, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //