Array 1 15818-16716 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALDX010000551.1 Dietzia sp. SLG310A2-38A2 NODE_852_length_20584_cov_135.900162, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 15818 29 96.6 33 ............................A CTGGCCCTCGGCCTGGATCGCTGCGACGACCAT 15880 28 96.6 32 .................-........... TCCCGGTTCTTCGCCGCAGCACGACGGTTCAC 15940 29 96.6 32 ............................C AGTGCCTCGAACGCGAGGACTGTCTGTAGGAG 16001 29 96.6 32 ............................T AGTGCGATCACTACTAGAAACAATATGAATGA 16062 29 100.0 32 ............................. ACAGCCTGGGACACCGGCTTCAGCCCCGCGGG 16123 29 86.2 35 .........................NNNN NNNNNNCGAGACGCCAAGAAGGAAGCCCGCGAGTT 16187 29 100.0 32 ............................. TCGCGCATCAGGTTGACCAGGAGGAACTCCTT 16248 29 100.0 32 ............................. CACGAGGTGGAGTGCCGGCGCAGCTACAGGCT 16309 29 86.2 36 .........................NNNN NNNNNNTGAGGTGCCGCTGGTGGTCGGTGCGGAAGG 16374 29 96.6 32 ............................C GCCAAGTTCCGCACCGCGAACGGGTCTACCAA 16435 29 100.0 32 ............................. AACTCGCCCGCGTCGAGGCCCGCATGGCAGTG 16496 29 86.2 36 .........................NNNN NNNNNNCGAGACCGGATCGTCGCAGCAGGTGCGTGT 16561 29 89.7 37 ..........................NNN NNNNNNNAATCCACCCACCGCTCGATGTCCTCATTCG 16627 29 96.6 32 ............................T GACGCCGATCCCAATGGCAGCGAGTACGACGA 16688 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ===================================== ================== 15 29 95.0 33 GTCGTCCCCGCGCAGGCGGGGCTGTTCCG # Left flank : GCTGCTACCGGAAACGGAAGATGAGGGTGAGGACGGGCTCGCGACGGTGATTGAACTCTGGGATGAGCAACTCGGGCGGGTGTCTGGCGGTACGAACTACAGCGAGGACGTGCCATGGTGACGATTGTCCTCACAGCTTGCCCAGCTGGGCTACGGGGTCACTTGACTCGATGGTTGATCGAAGTGAGCCCAGGAGTGTTCGTGGGCAGAGTCAACGCGAGGCTGCGTGATGAGCTCTGGAAGCTCATCCTTGAAACCGTGAAAGACGGGCGAGCGATCATGACTTACTCGACACGGGAAACAGAGCAAGGGTTCGACTTTCGTGTCCATCGGCACGACTGGTCGGTAGAGGATTTCGAGGGGCTACGTGTGATGCGTAGAACCACCTCTAGTAAGCGCACCACCGGAATGCGGAGAGGTTGGTCTGCTGCGTCGCATCTGCGCCGGAGAAAGTAAACTAGAACTCCGAGTATTTCTCCATTCTCCGCTGGTCAGCAAGT # Right flank : CCTACGGGATCACAACCCGTCGCTCTTCCATTGGTCGTCCCCGCGCAGGCGGGGCTGTTNNNNNNNNNNTCGATGATCGCCCCCACCGACGGATCGTGTCGTCCCCGCGCAAGCGGGGCTGTTCCGGCCCAACCGGTCGTGTTGATGTCCCAACGGTAGTCGTCCCCGCGCAGGCGGGGCTGTTCCGTCGGGAGCGTGTGGTCACTGCGGCGGTTCGCGGTCGGCCCCGCGCAGGCGGGGCTGTTCCCGGGCGGGCGGTACGAGTTGATCCAGTGGTCGGGTCGTCCCCGCGCAGGCGGGGCTGTTCCCCAGTGCCGGTTCGTGACGGTGTCGGGCGAGAGGCCGTCCCCGCGCAGGCGGGGCTGTTCCGTNNNNNNNNNNCCCCTCCTGCTGGCGGTCACCACCCTGCCGTCGTCCCCGCGCAGGCGGGGCTGTNNNNNNNNNNATGCAAGTCGACGGCGCCGAACGAGTCCTGTCGTCCCCGCGCAGGCGGGGCTGTT # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCAGGCGGGGCTGTTCCG # Alternate repeat : GTCGTCCCCGCGCAGGCGGGGCTGTNNN # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCACGCGGGGCTGTTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 17126-18542 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALDX010000551.1 Dietzia sp. SLG310A2-38A2 NODE_852_length_20584_cov_135.900162, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================== ================== 17126 29 86.2 35 .........................NNNN NNNNNNATGCAAGTCGACGGCGCCGAACGAGTCCT 17190 29 100.0 32 ............................. GAGCCGAACAAGCAGAGCGGAAACTGAAGCCG 17251 29 89.7 36 ..........................NNN NNNNNNNCAGTGCCCGAGGTCCAGTTCGGCCTTGCG 17316 29 100.0 32 ............................. GGCCCGCCCCACATTCTTCCGCGGCAGCGCCG 17377 29 93.1 32 T...........................G GAACCCGTCGACGTCACCCCGCTGTTGTAGCA 17438 29 100.0 32 ............................. TCGGGGACGAAGTTGGCGATAGCCATTGGGGG 17499 29 96.6 32 ............................G CCTTACCAGCGCAAGAGTGACGGCCTTTGGGT 17560 29 89.7 37 ..........................NNN NNNNNNNGTCCGGCTCGGCTATGCGGCACGTGTTGCA 17626 29 100.0 32 ............................. TGGGACCCGTTCCCGCTCTGCGCAGGGTTCCA 17687 29 96.6 32 ............................T CCGGCGATGGCTTTGTCGCCGTTCCACTGGAA 17748 29 75.9 33 ......................NNNNNNN NNNGTCGACCGGGTCCATACCGGCGGCCCGCAT 17810 29 86.2 36 .........................NNNN NNNNNNCGCACTAGCCGGCGATTCTCTGGTCTGGAA 17875 29 96.6 32 ............................G ACGGGCGCCCGGACAGCACGGGTGAAGTGGCC 17936 29 82.8 35 ........................NNNNN NNNNNTGCGCCGCCTCGAGATCGTAGAACCCGGCC 18000 29 82.8 43 ........................NNNNN NNNNNNNNNNNNNCCCGCCCTCAGGATCATCGTCGTGGGTCGA 18072 29 100.0 32 ............................. TGGCCGAAGAACTGTTCGGAGAAGCACACCCC 18133 29 100.0 32 ............................. AGCCTCTCGTGTTTTCCCTGCTCGACTCTTCC 18194 29 96.6 32 ............................T CGCACACCGGATCGTCGCCGCGATGCAAACGA 18255 29 82.8 35 ........................NNNNN NNNNNGGTGGCCGGCTGGGTCGGGCTGGACGACAA 18319 29 86.2 36 .........................NNNN NNNNNNAGACGATGCGAGGTCGCCGGCCAACTGGAT 18384 29 82.8 35 ........................NNNNN NNNNNGTGCGACCAGCCGAGATCCTGCGCACGCGA 18448 29 86.2 37 .........................NNNN NNNNNNTCAACCGCGTCACGAAACCTTGTCGTGGCTG 18514 29 89.7 0 ..........................NNN | ========== ====== ====== ====== ============================= =========================================== ================== 23 29 91.3 34 GTCGTCCCCGCGCAGGCGGGGCTGTTCCC # Left flank : GGTCGTCCCCGCGCAGGCGGGGCTGTTCCTGACGCCGATCCCAATGGCAGCGAGTACGACGAGTCGTCCCCGCGCAGGCGGGGCTGTTCCCCTACGGGATCACAACCCGTCGCTCTTCCATTGGTCGTCCCCGCGCAGGCGGGGCTGTTNNNNNNNNNNTCGATGATCGCCCCCACCGACGGATCGTGTCGTCCCCGCGCAAGCGGGGCTGTTCCGGCCCAACCGGTCGTGTTGATGTCCCAACGGTAGTCGTCCCCGCGCAGGCGGGGCTGTTCCGTCGGGAGCGTGTGGTCACTGCGGCGGTTCGCGGTCGGCCCCGCGCAGGCGGGGCTGTTCCCGGGCGGGCGGTACGAGTTGATCCAGTGGTCGGGTCGTCCCCGCGCAGGCGGGGCTGTTCCCCAGTGCCGGTTCGTGACGGTGTCGGGCGAGAGGCCGTCCCCGCGCAGGCGGGGCTGTTCCGTNNNNNNNNNNCCCCTCCTGCTGGCGGTCACCACCCTGCC # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCACGACGGCGACTGAGCACTCGGCGCGTCGTCGTCCCCGCGCAGGCGGGGCTGTTCCGCCAGACCCGGTCCCGCTACAGGTGACAGTGTCGTCGTCCCCGCGCAGGCGGGGCTGTTCCGTGCTGGTTCCGGCAGCAGCACCCTAGGTGATCGTCGTCCCCGCGCAGGCGGGGCTGTTCCGTTGACCCCGTTGGGCAATGTGGCGGCAGT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.56, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCAGGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCAGGCGGGGGTAATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.60,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [20.0-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 18862-19446 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALDX010000551.1 Dietzia sp. SLG310A2-38A2 NODE_852_length_20584_cov_135.900162, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 18862 29 100.0 32 ............................. CCAGACCCGGTCCCGCTACAGGTGACAGTGTC 18923 29 100.0 32 ............................. TGCTGGTTCCGGCAGCAGCACCCTAGGTGATC 18984 29 100.0 32 ............................. TTGACCCCGTTGGGCAATGTGGCGGCAGTATG 19045 29 96.6 32 ............................C TCGACGGGGCTCACGAGGCCAGTGCCCGAGCT 19106 29 86.2 36 .........................NNNN NNNNNNCTGGAACACCCGCCAGGCCTCGGCCCACAT 19171 29 82.8 35 ........................NNNNN NNNNNCCGTGGGTACCCAACGCTGGATTGTGGTCT 19235 29 100.0 32 ............................. GGGATCAGCTGGAGGCGGCCATGGTGGGCGTG 19296 29 96.6 32 ............................C AGATCGGTGACCCTCTGGGGGTGACCAGACAG 19357 29 96.6 32 ............................C GGGGCACCGGAGAAGTCGCCGCCAAACAGGAC 19418 29 89.7 0 ..........................NNN | ========== ====== ====== ====== ============================= ==================================== ================== 10 29 94.9 33 GTCGTCCCCGCGCAGGCGGGGCTGTTCCG # Left flank : CGAGGTCGCCGGCCAACTGGATGTCGTCCCCGCGCAGGCGGGGCTGNNNNNNNNNNGTGCGACCAGCCGAGATCCTGCGCACGCGAGTCGTCCCCGCGCAGGCGGGGCTGTNNNNNNNNNNTCAACCGCGTCACGAAACCTTGTCGTGGCTGGTCGTCCCCGCGCAGGCGGGGCTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCACGACGGCGACTGAGCACTCGGCGCGTC # Right flank : NNNNNNNNTCGAATCGCCGGGCGGCATCAACCCCTCAAGGTCGTCCCCGCGCAGGCGGGGCTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGCCGGCATGGAGAAGATCCGGGACATGTTGTCGTCCCCGCGCAGGCGGGGCTGTNNNNNNNNNNCGGTGCCCGGCCACATTCTCCAAGACGACGGTCGTCCCCGCGCAGGCGGGGCTGTTCCGCAGTTCTGCCTTTGAGGTGGGGCACAAAACACGTCGTCCCCGCGCAGGCGGGGTTCTTCCGGCGGTCCGCGGCGGAGTCGGTCATGCCGTTGCGTCGTCCCTGCGCAGGCGGGCCTGTTCCGCGGTGCCTCCGACTCGACGGTCTGACCCGTGGGCCGTCCCCGCGCAAGTGAGGCTGGTCCGGTGGGGCTTAAGGCTCTGGGGGTCGCTCCGGAGTCGC # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCAGGCGGGGCTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCAGGCGGGGGTAATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.90,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 19632-20150 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALDX010000551.1 Dietzia sp. SLG310A2-38A2 NODE_852_length_20584_cov_135.900162, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================== ================== 19632 29 86.2 36 .........................NNNN NNNNNNCGGTGCCCGGCCACATTCTCCAAGACGACG 19697 29 100.0 32 ............................. CAGTTCTGCCTTTGAGGTGGGGCACAAAACAC 19758 29 93.1 32 .....................T.C..... GCGGTCCGCGGCGGAGTCGGTCATGCCGTTGC 19819 29 93.1 32 ........T...........C........ CGGTGCCTCCGACTCGACGGTCTGACCCGTGG 19880 29 82.8 32 .C............A.T.A.....G.... GTGGGGCTTAAGGCTCTGGGGGTCGCTCCGGA 19941 29 75.9 90 ....C...T.......AC.....TCC... CCATTTGCAACGTCATCGTGCGGAAACGAAATCGGTGTTGGACTTCTCGGGCTGAATTGTTGTCTGAGCTCCCCGCTAGAGTGCTAGGAA A [19968] 20061 29 86.2 32 A...........A.A.............T CGTGACGTCGGAGGATCGAGTCTTCCCACCGG 20122 29 72.4 0 ............A.A......T.CCAG.A | ========== ====== ====== ====== ============================= ========================================================================================== ================== 8 29 86.2 41 GTCGTCCCCGCGCAGGCGGGGCTGTTCCG # Left flank : NNNNNNNNNCTGGAACACCCGCCAGGCCTCGGCCCACATGTCGTCCCCGCGCAGGCGGGGCTGNNNNNNNNNNCCGTGGGTACCCAACGCTGGATTGTGGTCTGTCGTCCCCGCGCAGGCGGGGCTGTTCCGGGGATCAGCTGGAGGCGGCCATGGTGGGCGTGGTCGTCCCCGCGCAGGCGGGGCTGTTCCCAGATCGGTGACCCTCTGGGGGTGACCAGACAGGTCGTCCCCGCGCAGGCGGGGCTGTTCCCGGGGCACCGGAGAAGTCGCCGCCAAACAGGACGTCGTCCCCGCGCAGGCGGGGCTGTTNNNNNNNNNNTCGAATCGCCGGGCGGCATCAACCCCTCAAGGTCGTCCCCGCGCAGGCGGGGCTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGCCGGCATGGAGAAGATCCGGGACATGTT # Right flank : AATTGCAGGTTCTGCCAGTCAAAAATTGAGTGCGACTCGGGTGGTCCCAGTCACCTACACCCCGAACGTCGACCGGGGATAGCCGGCCTCTACGTCTGTCACGATGTTGACCAGGTACGGCGCCCCGCTGGCGAACGCGCGGTCCAGGGCGGGGCCGATCTCTGCCGGATCGGTGACCATCTCACCGGCCCCGCCGAGCGCCCTGACCACCTGGTCGTACCGGGTGCGCGGGGCGAGGTCGGCGATCACGTCGTAGCCGTAGAGCATCTGCATCGGACCCTTCTCCAGGCCCCACGCCCCGTTGTTCCCCATCACCATCACCACGGGCAGGTTGTGCCGCACGAGGGTGTCCACGTCGATCAGTGAGAACCCGGCCGCGCCGTCGCCGAGCAGCAGCACCACCTGGCTCGACGGCCGGGCGATCCTGGCGGCGATCGCCGCGCCCAGGCCCGCGCCGAGGCA # Questionable array : NO Score: 4.34 # Score Detail : 1:0, 2:3, 3:0, 4:0.31, 5:0, 6:0.25, 7:-0.69, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCAGGCGGGGCTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCACGCGGGGCTGTTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-23] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //