Array 1 5592-5225 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXXR01000032.1 Listeria monocytogenes strain CFSAN045844 CFSAN045844_contig_0000032, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 5591 36 86.1 30 .....T..T............TT..T.......... TCATTTTTTTTTTTTTTTTTTTTTTTTTTC 5525 36 100.0 30 .................................... TCTGTTTGCAGGCATTGGCGGATTTCGTTT 5459 36 100.0 30 .................................... TAAAAGTAATGAATTATTCAGAACCAAGAA 5393 36 100.0 30 .................................... TTTTTTGATCTATTAGTAAACTGTTCGAAT 5327 36 100.0 28 .................................... TAATATTCTCCCCCCATCGCTAACAGGG 5263 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [5228,5231,5236] ========== ====== ====== ====== ==================================== ============================== ================== 6 36 95.4 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : TTT # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAATTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 801-39 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXXR01000001.1 Listeria monocytogenes strain CFSAN045844 CFSAN045844_contig_0000001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 800 36 100.0 30 .................................... GTAAATGCGATGATCCATGCTATTTTCGAG 734 36 100.0 30 .................................... TTAGTATGTCGTTTCGTTTCTGTAAAACCA 668 36 100.0 30 .................................... TCTGGGCGCTATGTATACAGAAGAAGAACA 602 36 100.0 30 .................................... CATATTATTCTCCCTCCATTAATCCGCGCG 536 36 100.0 31 .................................... ACCCCTCTTGAAATTGAGACGAACGGAGGGG 469 36 100.0 29 .................................... AAAATAAATCATTCTATAACACGGATGCT 404 36 100.0 30 .................................... CTTCGGTGTATCCTGCCAACCGTAGCGCTT 338 36 100.0 30 .................................... TTTCTGTCAGTGTTTCATCAACACTTATCA 272 36 100.0 30 .................................... GAAAACATCTATCAGACTCAAGACCAAACT 206 36 97.2 30 .....................T.............. TTGATGAAAGGTGTTAAGGACATCATAAGC 140 36 100.0 30 .................................... AAAATATAATCAGAAGGTTTCGGGCTACCT 74 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 12 36 99.8 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : CTCCAATGCTTTTTTTACATCTCTCGGAATGTTTTAGAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 537-39 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXXR01000044.1 Listeria monocytogenes strain CFSAN045844 CFSAN045844_contig_0000044, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 536 35 91.7 31 .....................T.....-...C.... CCACTTCTTTGTTGTACAGGAAATATTATTC 470 36 100.0 30 .................................... TCAGCAAGATTTAGATCACTACTTGTTCAC 404 36 100.0 30 .................................... TTCATCTGTACCCTATCAAGTATTAGCCGA 338 36 100.0 30 .................................... GCGGCTAAAGTGATTTGACCTTTACAATCT 272 36 100.0 30 .................................... TACTGCTCCATTTGTCCCTTTCGCAAAGCC 206 36 100.0 30 .................................... TAACTCACTGTCACTAGCTCCTGATGTTGT 140 36 100.0 30 .................................... AGAATTTCTCTTTGATTTTTTGTATAGTAC 74 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 8 36 99.0 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : ACGCCATTAGTCATACTGCT # Right flank : CTATTATTAACAGCAAATGACGAAAACGTTTGTTTTAGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //