Array 1 90864-92451 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKKS01000017.1 Vibrio paracholerae strain 2016V-1114 2016V_1114_contig17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 90864 28 100.0 32 ............................ ACTCAATAAGGCATTTCGTTGTGATCGCCATG 90924 28 100.0 32 ............................ TTTGGAAACTTTCCGCTTCATAGATCGCTTTC 90984 28 100.0 32 ............................ ATTAACGTTCTTCTTGTGTGCGCGATCGATGG 91044 28 100.0 32 ............................ TTATTTCAGCGCAAAGAACGTGCTTCTCGTGC 91104 28 100.0 32 ............................ GTAAATGGTGATGGTGGTTTCAGAGTCGTAAC 91164 28 100.0 32 ............................ TTCATGATCATCAAAAAACGCTTTAATGGCTT 91224 28 100.0 32 ............................ TCAATCTCCTACCTCTAAACCTCAACAAACGA 91284 28 100.0 32 ............................ TTCATCGGCAGCGCGGCGAATGGTTTCTAGAA 91344 28 100.0 32 ............................ TCTCTCTGAGCCGCTAAGGCATTTTCAGCTTT 91404 28 100.0 32 ............................ GATACGGTCGGGCGACTTAATACGCTCGTTCA 91464 28 100.0 32 ............................ AGTTGGCGAAGGTGCGGGAGATGCACTCCCCG 91524 28 100.0 32 ............................ ACGAAACAATCAAAACAGCTATCGACCAATAT 91584 28 100.0 32 ............................ CTGAGCCAACGCCTAACCCTGACCCAGAACCT 91644 28 100.0 32 ............................ ACGAAGGCAAAGAGTATTGGGTTAAGTCATTA 91704 28 100.0 32 ............................ GCTTGAAATAGTCACTCATGAAACGCTATCAC 91764 28 100.0 32 ............................ ATTGGCCGCATAGCTAGTGATGCTGGTGCTGT 91824 28 100.0 32 ............................ TAGCGCAAATCAACCGCAACAAGTTAAAATTG 91884 28 100.0 32 ............................ ATGGTGGCGGAGAGCATACCAAGTACGGCCAT 91944 28 100.0 32 ............................ TTGAAGAAATGGCACTACGTGAAAGCCAAAAA 92004 28 100.0 32 ............................ TAAACGAATGGGATGGTGAGAACTACACAGGT 92064 28 100.0 32 ............................ TGCCATATGATTCGATTCCACTTCAACCACCG 92124 28 100.0 32 ............................ ATCGAAGAGGCTGAGGGTGAATTTAAGTCAGT 92184 28 100.0 32 ............................ TTTCTGACTAAAGCCTGATAGATCCAGAGTCT 92244 28 100.0 32 ............................ ATCGAGTGCGCTTCTGCTGTGCTTTTTACTAG 92304 28 100.0 32 ............................ ACCACTTAAGTAAGAGCGGCTGGCGGGAGCAA 92364 28 100.0 32 ............................ TGCTACTTAAGATTATTGACCTATCTCTTTCT 92424 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 27 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GAGCGCACTGCATGATTTGCAGGGGTTAAATTGGTTAGGCCCTTTGGCTGGATATTGCAAGATTTCTACGGTTACGAATGTGCCAGACCAAGTGGAATATCGCATCATTTCAGTTAAACGCAGTAATTTAAGCAAAGCAAAATTAGCGCGTTTAATTGCTAGAGGTAGCATAGATAAAGATGGTGAGAAACGTTACAAAGTAAAAATGCTTCGCCAAGGGTTTGATAATCCATACCTTGATCTGTCTAGCAGTTCAACAGGGCAGGTGTACCGAAAATTCTTTGAGTTTAGTGATATTCAAGCTGAGCCAGTTGATGGTGAGTTTGATAGTTATGGTCTAAGCAAAACAGCAACTGTACCTTGGTTTTAACCCTTTATTTTTGCTCTTTAAAAATACGCTTTTAAAACAAATAGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTATCCTAACATCCTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : ATCTGCTTTCCCCATCATATGGGTTATCTATGTGATGGGGATTCGCTCGCTAGCGGCCTGCCTGTGAATCCAAGTGGTATGTGTCTGGTACGCAAGGTTTTTCTGTACCCCAAGCTGTGCCCAGAGCGATTGGTTTATAAAGGAAATCCTGTTGGTCTCCTTATTTAATGCGCTCTAGCATCACACCTGCTTCCATATGGTGGGTGTAAGGAAATTGGTCGAAGAGGGCAAAGCGCACCACTTGATGGGTTTCCCCTAGGACTTGTAAGTTCTCTTGCAGCGTTTCTGGGTTACAAGAGATGTAGAGAATGCGCTCATAACCTTGCACCATTTTACAGGTGTCGATATCCATGCCAGAGCGTGGTGGGTCGACAAAAATAGTGTTGCAGCGGTAGCTTTGCAGATCGACTCCCGCATCCTTCAAGCGATTGAATTCGCGTTTGCCTTCCATCGCCTGAGTAAACTCTTCTGCCGACATGCGAATGATCTGCACGTTGTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //