Array 1 171298-172912 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZMM01000002.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5462400, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 171298 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 171359 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 171420 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 171481 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 171542 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 171603 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 171664 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 171725 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 171786 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 171847 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 171908 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 171969 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 172030 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 172091 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 172152 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 172213 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 172274 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 172335 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 172396 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 172458 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 172519 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 172580 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 172641 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 172702 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 172763 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 172824 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 172885 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 189420-191950 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZMM01000002.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5462400, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 189420 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 189481 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 189542 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 189603 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 189664 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 189725 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 189786 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 189847 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 189908 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 189969 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 190030 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 190091 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 190152 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 190213 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 190274 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 190335 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 190396 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 190457 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 190518 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 190579 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 190640 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 190701 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 190762 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 190823 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 190884 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 190945 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 191006 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 191067 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 191128 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 191189 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 191250 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 191311 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 191372 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 191433 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 191494 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 191555 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 191616 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 191677 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 191738 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 191799 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 191860 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 191921 29 93.1 0 A...........T................ | A [191947] ========== ====== ====== ====== ============================= ================================ ================== 42 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //