Array 1 8831-9320 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFCE01000062.1 Caldalkalibacillus thermarum TA2.A1 ctg154, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 8831 29 100.0 36 ............................. TCTTGATATGATGCACCATTTCTTCACTCTTTTTGA 8896 29 100.0 37 ............................. GCGGACCCTGTGATCTGTGCCTGGCCCATTTGTATCA 8962 29 100.0 38 ............................. AACTTTGTACTCCAGCACCCTCAGCCGTTCATCCTTTG 9029 29 100.0 36 ............................. GGATGCCGGATCCTGGCCGTGTACCCGAAGGACATG 9094 29 100.0 37 ............................. ATAAATAAACCATCTAATTACATGATAGCACAAGGAG 9160 29 100.0 36 ............................. GGGCTTTGGCCCGCAGCTCTACAATGTCGGGAATGT 9225 29 100.0 38 ............................. ACAATTCTACCGCAAATTCATTAGCTTCCCTTTCCACT 9292 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ====================================== ================== 8 29 99.6 37 GTTTTATCTGAACTTAGTGGGATATAAAT # Left flank : GGTGGTAGTATGTTTGTCATCATCACATATGACGTGAATGAAAAAAGAGTACACAAGGTTTGTAAAAAGCTGAGAGAATATTTGTTGTGGACACAAAACTCCGTCTTTGAAGGGGAGCTGACAAAAGGTAAATTGAACAAGTGCCTGGCTGAGCTTGAAAAAATAATAAACAAGGAAGAAGATTCGATTTACTTGTATACGATAGAGAATCCAAGACATTTGAAAAAAACAGTCTTTGGCCAAGAAAAGTGTAACGATGACCTCTTTCTTTGAATGTATTGGTTAAGATGAAGACATGAAGGTGTTTAGTTCACTGCCGTAAATCCTCTGGTTGGACCAAGAGGCCGTGAACTGTTGTGCTTGTTGGGTTTTTAAATGATTAGACCTTTAAATTGATAAAGAAGACTTGCGATTTACTGCAAAATGGCGCTCTCTTGGTGTTTCAGCATTCTACTCAATTCCTTGGGCCACAAGGGATTAAAGATTTCGCTTTAATAGGG # Right flank : CTGGCGGTTTGATACGCAGCATAAAGCCGCTTTGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACTTAGTGGGATATAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 62-1374 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFCE01000231.1 Caldalkalibacillus thermarum TA2.A1 ctg80, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 62 30 96.7 37 .....................A........ ACTGCATACCATGGCATAGCAGGCAGATATGGCATGA 129 30 100.0 40 .............................. TTTTCGCCAGTCACCGCGAAAGTGCCGTTTGTTTTTTCGT 199 30 100.0 38 .............................. CTCTGTATACACTTGGTATAAGAGCGATAAACTCACTG 267 30 100.0 38 .............................. CGCGGAAACTTTAGTGATCTAAAGCATATCGAACTTTT 335 30 100.0 36 .............................. TTTGCCAAGTAACAGATTAACCATTTTTGGGAACAA 401 30 100.0 40 .............................. TCGGTGAAGCGTTGCTGGAAGGGCTATTTGAAGACGGCAA 471 30 100.0 36 .............................. TTATGTTTGATAAAAGCCGGAATATCCACATTTTCC 537 30 100.0 36 .............................. AGGATTTCATTTAGAGGCATGCAGTCTTCGCAGTAA 603 30 100.0 37 .............................. ACGTTGCCTCGGCACTTGTTACGCGGTTGTTTAGTGC 670 30 100.0 37 .............................. ACACGCAAGGTACTGGGTTTAATCTCGTTGCGGATGA 737 30 100.0 37 .............................. ATTCTTCCAGATTCATTTTCGCATCAACTCCTCTCTC 804 30 100.0 39 .............................. GCGTTGATGATGTCAGCGTCACGAACAGTTAAATTTAAC 873 30 100.0 37 .............................. CGGATGTCGTCCCAGACTTCCTTTGCCGCGTGTTCTG 940 30 100.0 39 .............................. ACCTCCTTCCAGATTCATTTTCGCATCAACTCCTCTCTC 1009 30 100.0 38 .............................. CCTTCATAAGAGTATTCCATTTCTGGGTTTTCAAAAAA 1077 30 100.0 36 .............................. CAGCTCAACAACAACAGCGATATATTGAGCGGAAAA 1143 30 100.0 36 .............................. GTGAGTGGAGTTGGGACAGCAAAGAGAAAGGCCGAC 1209 30 100.0 39 .............................. ATGTTGCCTCTGCGCTTGTGACACGGTTGTTCAGTTCGT 1278 30 96.7 37 .....................A........ ACTGCATACCATGGCATAGCAGGCAGATATGGCATGA 1345 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 20 30 99.7 38 GTTTGGATCTTAACTATGAGGGATTGAAAC # Left flank : CTTAACTATGAGGGATTGAAACATGTTGCCTCTGCGCTTGTGACACGGTTGTTCAGTTCGTG # Right flank : TTTTCGCCAGTCACCGCGAAAGTGCCGTTTGTTTTTTCGTGT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGGATCTTAACTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.40,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : NA // Array 1 67-1370 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFCE01000229.1 Caldalkalibacillus thermarum TA2.A1 ctg79, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 67 30 100.0 38 .............................. AATTGAATATCAACCTCTAATCCAAAACGCTCTCGAAA 135 30 100.0 36 .............................. CCACCAACCTTGTACTTGGGGAACCTCGGGTCGTAG 201 30 100.0 37 .............................. GCCTGGGGCCGATGTCCGTCAAACGGGCAATCACGGA 268 30 100.0 38 .............................. TACAGCTGTTCGTTCCGGCTTTGGCAAAGCTCCGTTTG 336 30 100.0 38 .............................. TATCTACGTGACCGAGCATTTGCGGTTCGACGACCCTC 404 30 100.0 37 .............................. ACGGTATAATTAAATTCTTCTGTAATGTCAGATTTAA 471 30 100.0 37 .............................. TGATGATACATTTTTAAACGCTTACCATAAGAAGGGA 538 30 100.0 38 .............................. CCAGGTTGGGTGCCGACATTTGCTCAGTGGACAAGGTG 606 30 100.0 37 .............................. GAACAAGAAAATAAAGGGAATGAATCGGAATATGAAA 673 30 100.0 38 .............................. TTACATTTCAGACTGGACAACCTTTTTTAAACGGGCTA 741 30 100.0 35 .............................. ACAGAAAGTATATGATGATAGCCACAACGGAAATG 806 30 100.0 37 .............................. CGGCATCCTGTCCGTCAATTTCAAACGTTATCTCAAA 873 30 100.0 37 .............................. TCGTGTTCCATTCGTCGTTTCCTCCTTCCGTTCCCAC 940 30 100.0 37 .............................. TCACAACCCGCGATATATTCGAGAAAATGTTGGCGGC 1007 30 100.0 37 .............................. TCACAACCCGCGATATATTCGAGAAAATGTTGGCGGC 1074 30 100.0 35 .............................. GTGCGTGTCTGGCATCGCTTGATACGCAATCCAGA 1139 30 100.0 38 .............................. GTTGGTCGATGGTTTGGCCCATCACCTCGCCTCCTTTC 1207 30 100.0 38 .............................. CCGCGAAAGGCAAGCGGAAACCGTTCACCAAGGCGGAG 1275 30 100.0 36 .............................. TATCGAAGCCTTGCCGAAGCAGGTCAAATCAGATGG 1341 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 20 30 100.0 37 ATTTGGATCTTACCTATGAGGAATTGAAAC # Left flank : TGCTTTATTATTGAAGCAGGATTTTTAAAGTTAAAGATCGAATACTGTATTATCAGCATTTTTTGGA # Right flank : TATCCCGGTGGCCCACGATGAAGGCGAGCAACTAGACCGATTTGGATCTTACCTAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTGGATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 1 1027-48 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFCE01000032.1 Caldalkalibacillus thermarum TA2.A1 ctg127, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 1026 30 100.0 38 .............................. GAGATAGCCGTCCAGGGTAGCTTAAAATTATTTCCTTC 958 30 100.0 38 .............................. TGCCGATAGCGAAAGCCTTTTTCTGATGATCGAAAGGC 890 30 100.0 36 .............................. AAGGTGAGTCTTCGCTTGCTAAATTATCGGGGCAAG 824 30 100.0 37 .............................. TGCGAAAGTCGTCGACCCCCTGGAGATAGATGACCTG 757 30 100.0 37 .............................. TAGTTAACGACGTAGAATGGTTTGGGGCAACGGAAGC 690 30 100.0 39 .............................. CAGCAGATGGAGAAACCGGCCGTGTGCAAGTTGAAGCAA 621 30 100.0 38 .............................. CATCTGATTTGTCATATCAGCGCGCCGCTGAGATGGTG 553 30 100.0 39 .............................. CAGTAGCCGTTGGTTCACCCTTCCGGTTGGGGAATCCCA 484 30 100.0 36 .............................. AAGGAGGGACAAGCTATGGCCAGTATTCAAAAGGTA 418 30 100.0 38 .............................. TCAAAAGAAACGGCCGCCCTTTTGGCGGAGGGCGACCG 350 30 100.0 38 .............................. AAGTAAGGGGTGTAAAGTAATGAGATTAATTGAAATCA 282 30 100.0 36 .............................. CTAGACATAGTGTCTTTGTACTTCGATGAAAGGGTG 216 30 100.0 39 .............................. TTGTCTATGCATGGTCGGGTTCTCCACCCTCAACCTAAA 147 30 100.0 40 .............................. TGGCTAAAGCACGGTTTCCTTTGCACTCTTTTCGTGCAAA 77 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 15 30 100.0 38 GTTTGGATCTTAACTATGAGGGATTGAAAC # Left flank : ACTATTTTCATCCTGATAACCGTATGTTTGCCCAGCAGGTGGAAGATAATCTGTTAAGGAAGTATGAGGCTTTCTACGGTCAACCAGCAAGCGAACGCTTTTTGATCCGTCCTGTCCGCATCCGTCCCATAGACAAGGTGGTGACCCGGTTTAAAGGTACGATTATCAATGCTTGGTCTGGCATCTACGAAGTACAATCCTCCCCTGAATTGATCAGTTTTGCCTATAAAGCAGGATTAGGAGCGAAAACATCACAAGGTTTCGGTATGTTTGAATTCATCTGAATTCAGAACATGAGAAAACATGATTTTCATCAGTCCGTCTTGTCGTCGATCCTTAATAGCGCAAAATTCCCGGGGGATCGACGACACAGAATATTCTGATAAATAAACTCCAAACCATTGCAGGTCAAAGAATGTATATGTTTTTACAAATATTTTGAGTCCATACAGGAATTTTAGAGTAAAATGTCGTATATTTATATATCAGCATTTTTTGGG # Right flank : CACCTCCTTGGCTGGTTGATAGTGTTTGCACTCTCTCACGTTTGGATC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGGATCTTAACTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA // Array 1 1246-36 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFCE01000206.1 Caldalkalibacillus thermarum TA2.A1 ctg58, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1245 29 100.0 37 ............................. TTTTTGTTGCCTGTCTTAATCGCTTTTTTGTCTCTGT 1179 29 100.0 36 ............................. CGAATGTGATTATGCAAAGTATTTGCTAGAAAAAAA 1114 29 100.0 38 ............................. AGGGTCAGATCCCCGTGTCGCTCGACAACTTTTCCTTT 1047 29 100.0 37 ............................. CTGTATGTTTTAATTGGTTCGTTTATAAGTAACAGGG 981 29 100.0 36 ............................. CTGGAACGAGCAAAGGCTTTCCTATCTCGTACCGAA 916 29 100.0 36 ............................. GCCAAAGCGGCTTTATGCTGCGTATCAAACCGCCAG 851 29 100.0 38 ............................. CTACTAGGCAACGCTCAGTTGCAAACTTCGCAACGTCC 784 29 100.0 37 ............................. CTGTTCAACTTTGCTACAATCCAGAAGTGATCACCAA 718 29 100.0 36 ............................. GAGAAAGTGACGCTGACAGTCGGTGCTGCTCTGAAA 653 29 96.6 36 ........T.................... TTTCGGCCCCGGCCCGTACACCCCGAATCAGAACAA 588 29 100.0 37 ............................. GATATAAGCTATGCAGGCGGACAGAGCGGACTACCCT 522 29 100.0 37 ............................. CGGCAATCACGTCTGCCAGGGCGTTGAGAGCTTCCTC 456 29 100.0 36 ............................. AATGTCGGCAATCACGCTTTTAGCGTGACCAAAAAA 391 29 100.0 37 ............................. CCCCTGTCCATTCCCCATATTCCAGCATCACCTTTGA 325 29 100.0 36 ............................. CATCATTGCACAAAACCAAGAATCAATCATCGACAA 260 29 100.0 36 ............................. GGTTGACGGGGAATGTGTAATCAAGGGGTCAATGCT 195 29 100.0 37 ............................. GCGTTTTCCTTGATGGTTTTTTCCATCTCCGCCAGTA 129 29 100.0 36 ............................. ACTTGGACATTGAGCACATAGCTTGTAGCGTTTGAT 64 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 19 29 99.8 37 CTTTATATCCCACTAAGTTCAGATAAAAC # Left flank : AGTTCAGATAAAACGATGATGTGATTTATGACACGGTGTACGTTGAAAA # Right flank : CATAGAAAATGGAGAATCTAAAGGAAACACAATATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTATATCCCACTAAGTTCAGATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 50-2240 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFCE01000225.1 Caldalkalibacillus thermarum TA2.A1 ctg75, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 50 29 100.0 37 ............................. TATCGAAGCCTTGCCGAAGCAGGTCAAATCAGATGGA 116 29 100.0 40 ............................. TATCCCGGTGGCCCACGATGAAGGCGAGCAACTAGACCGA 185 29 100.0 39 ............................. TCGCCAGAAATTCATTGCTACTGCCGTAGGTGAAACAGA 253 29 100.0 38 ............................. CCTCAAACGTGCTATCTGGCTTTGCCATGGAAGCTGAA 320 29 96.6 37 ............................A CGAGACAATAGCCAAAATGGGGAGCATGAGCCGCAGA 386 29 100.0 37 ............................. GACGTCATATCATACCAGGCATCATGCCAATCAAAAA 452 29 100.0 37 ............................. AAGGGGGTGATACATTGGGTTTTTGGAGCAGATTTTA 518 29 100.0 39 ............................. TGATTCTGGCATCGTCGTCCACCTGGACAGGATATACCA 586 29 100.0 39 ............................. TGGTGCGCATATTGAAAAACAGTAAAAATCATAGGCTAG 654 29 100.0 38 ............................. TCGCAAATTTCCATAAAGGTTTCTTCGTCTATAATGAG 721 29 100.0 38 ............................. TCCGGTGTTTGTTCCATGAGGTTAATAATGCGAGGATG 788 29 100.0 41 ............................. AACTGCTGATCTCACTGTGGATGGTGGGACAACAAATGTTG 858 29 100.0 37 ............................. CCAAGCTAGCCGATCCATCCACTTTGCCCACTAGCAG 924 29 100.0 39 ............................. CGTTCATCCAGCTTACGAAGGTGAACACATCGGGAATCG 992 29 100.0 38 ............................. TGTGTGAGACGGTGCATGTTGCTGATCTGCTCAAGCGG 1059 29 100.0 38 ............................. CAACTCTCATGGACAAACAGCCGATTCATACCAAGCAG 1126 29 100.0 40 ............................. AATGCAACAAGTGCTACACATGGGGCGAGGTTCCTCAGTG 1195 29 100.0 42 ............................. GGGACATTGAGGCGCACAAAGCAGAGTACAAACGAAGAACAG 1266 29 100.0 39 ............................. AACGAGGGAATTTATGCCAGTGAACTGATAGCAACAGAG 1334 29 100.0 39 ............................. CAAGACGATGATCCGAGTTCGGTCAAAGGTCTGCTTGAG 1402 29 100.0 40 ............................. TCTGAGTTGTCGTTCTCCCGTCCTTCTATCGCTTTCAAAG 1471 29 100.0 37 ............................. TTTGTATAAAAATTTATTTTGCACGATTTTTGCACGG 1537 29 100.0 40 ............................. AGTTTTCCGTTTACCATTGCTGCAAAGAAACCTGTTACAG 1606 29 100.0 39 ............................. TGTGACCTTCCGCCAGGGCCTCTTTGATACACATCCGGG 1674 29 100.0 38 ............................. TAAACCAAGGGACTGAACCCACTGACGGCATTATTACG 1741 29 100.0 39 ............................. CCCCTACAAGAAAATCCTCATCCCCTCACCGGATGATAG 1809 29 100.0 38 ............................. AACTCATCGACAATCTTATTAATTTAGGTCCTGACTAG 1876 29 100.0 40 ............................. TTCCTCTACTGGTTCATACGTTTGTTGGAAAATATGATCG 1945 29 100.0 36 ............................. CATACGCAAAACCTCTAAAGCGGTTTTTGGGAGTCG 2010 29 100.0 37 ............................. CCACATGCAGGAGGTGATATTGTAGCTGATACAGCCG 2076 29 100.0 38 ............................. GAGCTCTCCGAGTTGTTGGAGTAGCTCTTCTATTTTTG 2143 29 100.0 40 ............................. GAAGCACGAGTTATCAAGATAGAGCGTAGGCGCAAGAACG 2212 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ========================================== ================== 33 29 99.9 39 TTTGGATCTTACCTATGAGGAATTGAAAC # Left flank : GAATTGAAACCCGCGAAAGGCAAGCGGAAACCGTTCACCAAGGCGGAGAT # Right flank : AGCAACCTTCTCCAGACGGCCAGCCAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTGGATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : NA //