Array 1 13943-12451 **** Predicted by CRISPRDetect 2.4 *** >NZ_WBSN01000022.1 Bifidobacterium avesanii strain DSM 100685 Contig_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 13942 28 100.0 33 ............................ CGGGTGGGACTGGGGCGGCCAGATCGCCGGCGA 13881 28 100.0 33 ............................ CCACGAGTCGCTGCCGGCCAATGTGCCGCACAT 13820 28 100.0 33 ............................ CGTGCGCCAGTCGTTGTAGCCGACCCTGCCTTT 13759 28 100.0 33 ............................ CTGCGCGTCCGTGGGCCATCCGACGGCTTCGGG 13698 28 100.0 33 ............................ CGCGGATGATTCCCTCGGTGGGCACCATGTCGA 13637 28 100.0 33 ............................ CGGGATTCAGCGGGCAATCCGATCGACCAGACG 13576 28 100.0 33 ............................ CCTACGTGGGCCTTGCCGGCCTGAAACGCGCCA 13515 28 100.0 33 ............................ CGTTTCCAAGGGGATCGCGATGAACGGCGCGGC 13454 28 100.0 33 ............................ CGTGGTGCAGGCCGTGACCAAGTTCGTGCAGTC 13393 28 100.0 33 ............................ CCCAGTGAGCATCATCACCGACGAAATCGAGGA 13332 28 100.0 33 ............................ CGGGTAGTCGAAGACGCGGATGCTCATCACTCC 13271 28 100.0 33 ............................ CTGCCCGCGTCGAAATGCACGGGCGTGTCGGAC 13210 28 100.0 33 ............................ CCGGACGGAACCCAGACCAAGCGGCGCGGCTTC 13149 28 100.0 33 ............................ CACGCTGTCGATGGTGCGGATCTCCATGCCGTC 13088 28 100.0 33 ............................ CCTCGTGAAAACCGTCATGGACGCGTTGAACGG 13027 28 100.0 33 ............................ CGCACCGTCGAGGCCGGGGCCCGATGCTCCATG 12966 28 100.0 33 ............................ CTCGAAGGACCGGGGCATGTGGGAGCGGGTCAC 12905 28 96.4 33 ...............A............ CTGTCCGGCGACGGCATTCCCCTCGAGGGGGTG 12844 28 100.0 33 ............................ CTCGCACGGCTCGATGGCATGCGCCGGCGCAGC 12783 28 100.0 33 ............................ CGGGACCGGCCGCGTGGTCGAGGACAAGGCCTA 12722 28 100.0 33 ............................ CTCGGCCTCGACAACAAGTACAGCCGCGACGTG 12661 28 100.0 33 ............................ CGGCGGCACTGCCCCGGCGAACAGCGGGCTCAT 12600 28 100.0 33 ............................ CGGCGGCACTGCCCCGGCGAACAGCGGGCTCAT 12539 28 100.0 33 ............................ CCTGTGGATGAAACCGCAGGACACGCAAGTGGA 12478 28 85.7 0 ......T.T......T...........T | ========== ====== ====== ====== ============================ ================================= ================== 25 28 99.3 33 GTGTTCCCCGCGTAGGCGGGGATGATCC # Left flank : GAGGAATGGTGAAAAGGGGCGTATGCGATGGTGGTGATAGTGCTGACCGCCTGTCCCGTGGGCCTTCGCGGTGACCTGACCCGATGGTTATTGGAAATATCGGCTGGTGTCTTCGTCGGTCATATCAGCGCCAGAGTTCGGGATCAACTGTGGGAGCGGATTGTTGGATTGGTGCGGGATGGGCGGGCAATCATGGTGTATTCCGCGCGCAATGAGCAACACCTCGCGTTCCGGATTCATCATGCTGATTGGATTCCGGTGGATTGCGATGGGCTGGAGCTTATCAAACGACCTAAAGGAAAGGAGGCTCCCGAATCCAATTCCCGTCGTCCGGGTTGGAGTAATGCCAGCAAATGGAGATCGGCGCGTAAATACCAATGAGGTTGCCGTTCTGCGACCTTGCCCGGATAGCGTCTCCGCGCTTAGCGAGTGCCGGCAAAGTGAATGAAAATGGAGTAGCGCAGCTTCGATATCCATTGGAATCATTATGATTACGAAGT # Right flank : TTGCAAGTCCGTTCAGTATCCGGCGTGTCCGACTAGCCTGTGTCGAGTCGGACACGTCAGACGCCTCTGGCACTGTATCTGTACTCTTCCCTTGGGACGGGCATGAGGGTAGTGTTCCGGTGGGCTTGAGTATTGGGATTTTGCTGGCCCCTCCCGGTGGTGGGTTTAGGCGTTGATCCATTGTCGGCTGAGTGTGCTGAGTGGTGTTGCGGGGTCTCGGTTGCCGCGTAGCCAGCATGGGGCGTGGGTGGTCTTGCATTTGTCGAAGAAGGCTTTGCGGTCCTTTTCGAATCGGCGTCCGCCTTTGCGCAGGCGTCGGCTTGGCGCGACCATTGAGCACCTCAGAATCGTTGGTATTCCAGTCGTGTTGTGGTGCTCCCAAGTTGTATACCTACAGTTATTGTATTGCTATAGATATGTTGACAAGGAAGACCGGCAACAAGTCAAGAGTGAAAGGAGCAGCACGGGATGACAGCCGAGTGGATCACGGCGATAGCGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTAGGCGGGGATGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.70,-13.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 112045-112528 **** Predicted by CRISPRDetect 2.4 *** >NZ_WBSN01000004.1 Bifidobacterium avesanii strain DSM 100685 Contig_4, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 112045 36 97.2 28 ..................A................. GACGAGTCGGTCACGTCGGATGACACGG 112109 36 100.0 28 .................................... TGCTTGGCGAAACCCTGATACGCCCATT 112173 36 100.0 28 .................................... CATGTGGGCGTGGGAAATGCGCGAATGG 112237 36 100.0 28 .................................... GGTGCCGCGGGCGGCCGGCGTCGCGCCG 112301 36 100.0 28 .................................... TACGCGCATGGTCTCATATCGTGCGAGG 112365 36 100.0 28 .................................... CGCATTCCTCGCACACGATGACGTGTCC 112429 36 100.0 28 .................................... GAAATCCGCGACATCCGCCACGGTCTTC 112493 36 97.2 0 ..................A................. | ========== ====== ====== ====== ==================================== ============================ ================== 8 36 99.3 28 CAAGCTTATCAAGAGGGGGAGATGCTAATTCTCAAC # Left flank : GTTCAATGAAGACGGTCTGACCATCCCCAGTTCACTCAATGACTTCACAAGACAATATGGTCTCTACTGCGAAGGCAAAATCGACCGTCTTCCCGTACCGGAGTATGCGGGGACATTATGAAAACGGACGAGGACAGTGGCGGCATGTGGTGCTTGGTGATGTTCGATTTGCCGGTTAAGACGAAAAAGCAGCGTCACCGTGCCACGGAATTCCGCAATCTGCTGATCGATATGGGATATGCCATGGTGCAGTATTCCGTATACGTGAGATACACGCCTACGCAAGCGGGCAATCGTTCCACTGTTCAGACCATCAAGGAGCACCTTCCTCCGGATGGTCTTGTTCGCGTGGTGCATTTGAGTGACCATCAGTGGTCGTCGTCACTGCGTTTTTCCAGTTTGAAACAAGAGAGTGAAAGCGAAACTCCGGAACTGTTCACGCTTTTCTGAATGTGGAATCAGCTAGAAACGGCGAAAAATAGCCCCTCTTGAGGAGATAA # Right flank : CCCTCATTTTCCTTGTGAGGCGTACTAAAATTCACCATGCCTCAGAATTTGGTTTGATCACTTACTTTTGAAGCACGCGGCTAGGTGTTGGTAGTGCCTAGCCGCATTCTTTTAATCGGGGTATCCGTCCGTCAGATCCGACGGATGGCAATTAAGTATGCGGGACAATCTCAATGCCGTGGTAAGCGTCATGTTGCCGACATCTCTACGGCCGGTTTCATAGGCGCTTATTTCGGTTTGGGACATGCCCGCCCGCTTGGCTAACTGGACTTGGGTTAGTCCAGTGGCCTTGCGTAGTTCCTTAAGTCCCATTGGCTCACCTACTTTCGGTTTAGGTGAGTCCGATAATACTAGCGAATTGTAATATTCGCATGTATGGGGATGCACTCTGAAGTTCTCAAACTGCGATTGTCGTTGCCCGATCGGGCTTGATGATTATTAGCATACGCTAATATCCGTGGGTAATCAAATCGGCGTGTCGAAAACCGGCACGCCGATTA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAGGGGGAGATGCTAATTCTCAAC # Alternate repeat : CAAGCTTATCAAGAGGGGAAGATGCTAATTCTCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //