Array 1 165914-163747 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXEA01000006.1 Salmonella enterica subsp. enterica serovar Uganda strain BCW_2248 NODE_6_length_395129_cov_0.464266, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 165913 29 100.0 32 ............................. TGAACTATATCAATATAAAACTCACTAAAATA 165852 29 100.0 32 ............................. CCACACGTTGAGCGTAAACCTCTGCCGTTTCC 165791 29 100.0 32 ............................. ACTCCGCCACCCGCGTGGCGGGTAATAAAAAA 165730 29 100.0 32 ............................. TCAAACATCAGCGATTCATCGACAGCGTATGA 165669 29 100.0 32 ............................. TATTCACTAAGCATTTCATTTTTTATAATGAT 165608 29 100.0 32 ............................. CGACCCCCCATTTTTCCGAATCGTAAACGAAC 165547 29 100.0 32 ............................. GGAGGTGATAACCGCCTCGCTGAACGCTACGC 165486 29 100.0 33 ............................. AACATCCAACGGATTCGCTTTACTCAACCATGC 165424 29 100.0 32 ............................. TCGTTTCGTGTTGCTTCATCTGGCAGGTCCAA 165363 29 100.0 32 ............................. TCAGTTACCGATGTTAAAGCAAAATCCGCTAA 165302 29 100.0 32 ............................. CGTAAGAGCCAGGCGATGCCAGGCACTAACTC 165241 29 100.0 32 ............................. GCATGACAGGGCGTATTCATCCCACGTGCGTT 165180 29 100.0 32 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCG 165119 29 100.0 32 ............................. ACAAAAGAAATTGTGACACCTAACACGGCCGA 165058 29 96.6 32 ............................T GTAGTTATACTAATAATGTAGTTGAGTAAGAG 164997 29 100.0 32 ............................. GAACTGATGGGCGCCATTACCGGCGAATTAGC 164936 29 100.0 32 ............................. GACTGGTATATCAACAATCATGAGCAATTCTG 164875 29 100.0 33 ............................. GAATCCCAATCTATTACCGGCACGTAGCCGGGG 164813 29 100.0 32 ............................. GCAATATCAACCGGGCGACCTGTCGCCTGCTC 164752 29 100.0 32 ............................. CTCTACGCTCGTTGCCCACGGAAAAGTCTCGT 164691 29 100.0 32 ............................. TAACCGGCACCTTTACCCTTGCGGAGGCTGAG 164630 29 100.0 32 ............................. ACGATTTCGAACGCGTCAGCGGTCCTGACTAC 164569 29 100.0 32 ............................. CATGGCTGAGGGGATGGCGCTTAAAGACTGGC 164508 29 100.0 32 ............................. CGGGCGTTAACGTCCGAAGAGGTTCGCGAAAC 164447 29 100.0 32 ............................. TGGCACGCCCCCGGCTTCTCTATCCGCGCTTT 164386 29 100.0 32 ............................. GTCACGTTCTGGAGTGTTCACAGCGTGAATTG 164325 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 164264 29 100.0 32 ............................. TAACGCTTCAATGTCGCAAGCTTCAGTTCGTT 164203 29 100.0 32 ............................. GATTTACTAAGGTCAACGAGGGATTGAATTGG 164142 29 100.0 32 ............................. GCGAGGATCTTGTGTTGCAGGTTGGTCTCGCC 164081 29 100.0 32 ............................. CAGCGCCGTCCCGCTGCGCAGATGTTCGGTGA 164020 29 100.0 32 ............................. CAGGTCTATTGGACGATCGATAAAATCATTCA 163959 29 96.6 32 .............C............... ATAATAAGCTCAATAATGTAGATATTGAATCA 163898 29 96.6 32 .............C............... ACGACGGCACAAAAGAAATTTCCACCGTGGAT 163837 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 163776 29 93.1 0 .............C.A............. | A [163749] ========== ====== ====== ====== ============================= ================================= ================== 36 29 99.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : CGCCAGTGCTGCGCATTCTTGCTCCGGAGTGGGATGACGCGCCGCGAGAGAACTGGTTATCCAGCGCCATGCGTAACAGCGCCTATGTCTATCCCGATCATGGGCGCATGTGGCTGACGCAGCGCATATTACGTGAGCAGGGGACGATTCGGATGCCGCAATCTGCCCGCTTGTTGATTGAGTCGGTCTACGGTGAGGATGTCAACATGCCGGTTGGATTTGCAAAAACCGAGCAATTGCAGGAAGGCAAATTTTATTGCGACCGGGCATTTGCCGGCCAGATGCTGCTTAACTTTGCGCCGGGCTACTGTGCTGAAATTAGCGATTCTTTACCGGAGAAAATGTCAACGCGGCTGGCGGAAGAGTCTGTCACGCTGTGGCTGGCGAAAATCGTGGATAGCGTCGTAACCCCTTATGCCAGCGGTGAACACGCCTGGGAGATGAGCGTGCTGCGAGTACGTCAGAGCTGGTGGAATAAACATAAAGACGAGTTTGAAAAA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 176412-176140 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXEA01000006.1 Salmonella enterica subsp. enterica serovar Uganda strain BCW_2248 NODE_6_length_395129_cov_0.464266, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 176411 29 100.0 32 ............................. GTGGATATGCTGGCCGAGAAGGTTGGAACAGA 176350 29 100.0 32 ............................. CCATCCTGGCGGAACTGTATGCAGAAACAGGC 176289 29 100.0 32 ............................. GACTACCCGGCATTTGTGGACGCATATCGGCA 176228 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 176167 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCTTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //